| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,091 | 1 | . | C | 93.9% | 324.3 / 18.0 | 132 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/8); new base C (2/122); total (2/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
| * | NC_000913 | 3,957,091 | 2 | . | C | 94.0% | 326.6 / 18.0 | 133 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/8); new base C (2/123); total (2/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 | |||||||||||
Only 100 of 158 total aligned reads displayed.
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173 || ttGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑a < 1:2515700/93‑1 (MQ=255) tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑c < 1:1783410/93‑1 (MQ=255) tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑c < 2:1986456/93‑1 (MQ=255) aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑ccc < 1:4590245/93‑3 (MQ=255) aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑ccc < 1:3727938/93‑3 (MQ=255) cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑C‑‑cctc < 2:502238/93‑1 (MQ=255) taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGTTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑C‑‑cctctccc < 2:4327998/93‑5 (MQ=38) aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagg < 1:66379/93‑1 (MQ=37) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggg < 2:1011315/93‑1 (MQ=37) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggg < 1:3123040/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 2:2283446/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 2:4022670/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 2:1193931/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 2:2025620/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACaggga < 1:1973708/93‑1 (MQ=37) aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggaga < 1:2454025/93‑1 (MQ=37) aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggaga < 1:2716087/93‑1 (MQ=37) aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggaga < 2:1616798/93‑1 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagag < 2:837989/93‑1 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagag < 1:4013836/93‑1 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagag < 2:656650/93‑1 (MQ=37) cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagagg < 2:3526764/93‑1 (MQ=25) tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagaggg < 2:1063633/93‑1 (MQ=25) cgcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACagggagagggag < 1:3791417/93‑1 (MQ=25) gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAgggagagggaga < 1:4264171/93‑1 (MQ=25) gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑CCTCCCACAcggagcggggga > 1:4623196/1‑93 (MQ=25) gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaaaa < 2:476662/93‑1 (MQ=21) gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGaaaa < 2:4507182/93‑1 (MQ=21) cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAac < 2:2715881/93‑1 (MQ=21) cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAac < 1:2579504/93‑1 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑GCCCCCCC‑CCC‑‑ACCC‑‑CCTCCCCCCCGGAGAGGGAGgaaaaa > 2:4620486/1‑91 (MQ=255) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAaca < 1:3395608/93‑1 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAaca < 1:937925/93‑1 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAaca < 2:837859/93‑1 (MQ=21) atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAacac < 2:570964/93‑1 (MQ=21) atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTc < 1:2725439/93‑1 (MQ=21) tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGGCCCCACTCC‑CCC‑‑C‑‑C‑‑CCTCCCACCCCGCGAAGGAGAAAAcacac‑a > 2:4168807/1‑93 (MQ=255) tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCCCACC‑CCC‑‑ACCC‑‑CCTCCCCCCGGGGGGGGGGGGAAACACTC‑a > 1:1454056/1‑93 (MQ=255) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACCGGGAGAGGGAGAAAACACTC‑AA‑ggcc > 2:705210/1‑90 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcct < 1:1365027/93‑5 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcct < 1:2156561/93‑5 (MQ=21) atGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 2:4422825/93‑1 (MQ=18) atGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCCCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 2:4218278/93‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 1:2604471/93‑1 (MQ=18) gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtctc < 2:3497452/93‑1 (MQ=18) gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtctc < 2:1551671/93‑1 (MQ=18) aaaCGTATTGCTTTTGCGGTTTAAGTGCGCGCTGAGG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:497037/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:1021635/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 2:2060299/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:191149/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 1:749614/93‑1 (MQ=18) cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTgg < 2:1454695/93‑1 (MQ=18) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 2:2636398/93‑1 (MQ=18) gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 2:1276195/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:162991/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:4495315/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 2:3295827/93‑1 (MQ=18) tGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 2:1612940/93‑1 (MQ=18) cTGTTGCAGGTTAAGCGTGCGCTGATA‑‑CCACTACT‑CCG‑‑A‑‑CCGTCTCCTACAGGGAGAGGGAGAAAAAACTCGAG‑GCATGCTCCTGGAGAAGGc < 2:1596728/93‑1 (MQ=12) tGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGcc < 1:4195381/93‑1 (MQ=18) gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:2772129/93‑1 (MQ=18) gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:4620925/93‑1 (MQ=18) gTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCGTCTCCTGGAGAAGGCCt < 2:760563/93‑1 (MQ=18) ttGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:411107/93‑1 (MQ=18) tcGGGTTACGCGCGCTCTCATG‑‑CCCCCACC‑CCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACCC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:1112027/92‑1 (MQ=12) gCGGGTTAAGTGCGCGTTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:28612/93‑1 (MQ=18) gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGTCTTCTCCTGGAGAAGGCCTTGc < 1:3569633/93‑1 (MQ=18) gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:1026310/93‑1 (MQ=18) gCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:3414100/93‑1 (MQ=18) cGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCt < 1:3827185/93‑1 (MQ=18) gTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 1:2287765/93‑1 (MQ=18) ttAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 2:3801561/93‑1 (MQ=18) ttAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:1872305/93‑1 (MQ=18) aaGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:2939972/93‑1 (MQ=18) aaGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTACCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:1702174/93‑1 (MQ=18) aaGGGCGCGCTGATG‑‑CCCTCACC‑CCGGCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:936676/93‑1 (MQ=17) aaGGGCGCGCTGATG‑‑CCCTCACC‑CCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:2847661/93‑1 (MQ=18) aGTGCGCGCTGGTG‑‑TCCTCACCGTCG‑‑AC‑C‑‑TCTCCGCCAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCCCCGGGAGAGGCCCTTGCTATTAgct < 2:734400/93‑3 (MQ=12) aGTGCGCGCTGATG‑‑CCCTCCCC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACCCTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:1228243/93‑1 (MQ=18) aGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:376387/93‑1 (MQ=18) aGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:504056/93‑1 (MQ=18) aGTGCGCGCGGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:2958789/93‑1 (MQ=18) tGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTCGAG‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:380806/93‑1 (MQ=18) tGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:3366499/93‑1 (MQ=21) tGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 1:3772101/93‑1 (MQ=21) gccgcgcAGATG‑‑CCCTCCCC‑CCG‑‑ACCC‑‑TCTCCGACAGGGATAGAGAGAAAACACAC‑AAGGCCTTCTCCTGGAGAAGTCCTTGCTATTAGTTGc < 2:2475745/91‑1 (MQ=255) cgcgcTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:3637716/93‑1 (MQ=21) gcTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:2040369/93‑1 (MQ=21) gcTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:1408232/93‑1 (MQ=21) cTGATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:940577/93‑1 (MQ=21) gATG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAgt < 1:3639552/93‑2 (MQ=25) aTG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAgta < 2:4281242/93‑3 (MQ=25) tG‑‑CCCTCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTAc < 1:3936794/93‑1 (MQ=25) cccTCACC‑CCGCCC‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCt < 2:1689805/93‑1 (MQ=21) tCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa < 2:3089731/93‑1 (MQ=25) tCACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTaa < 2:2362953/93‑1 (MQ=25) cACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat < 1:2426297/93‑1 (MQ=25) cACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat < 1:814439/93‑1 (MQ=25) cACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat < 1:1476726/93‑1 (MQ=25) cACC‑CCG‑‑ACCC‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGTACCTTAat < 1:1326695/93‑1 (MQ=25) || TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑‑CCCTCACC‑CCG‑‑A‑‑C‑‑TCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |