| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,560 | +C | intergenic (‑129/‑732) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,558 | 1 | . | C | 98.9% | 582.7 / ‑5.1 | 184 | intergenic (‑127/‑734) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (2/0); major base C (84/96); minor base A (1/1); total (87/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 196 total aligned reads displayed.
TTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CC‑‑T‑GC‑TCGCAGG‑T‑CC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG > NC_000913/3957469‑3957645 | gCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑T‑ccct > 2:4653394/1‑91 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑T‑ccctca > 2:3178309/1‑89 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCC‑GGGAAAT‑CCG‑G‑GCTTCGCAGG‑T‑ccctcc > 2:2400370/1‑89 (MQ=255) aTCCGCAGATGCTAACGTAATTGTCAGTCGGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAgg < 1:1846983/93‑1 (MQ=255) aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAgg < 2:4503788/93‑1 (MQ=255) aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAgg < 1:4443476/93‑1 (MQ=255) tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAggg < 1:3730967/93‑1 (MQ=255) tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAggg > 2:4453096/1‑93 (MQ=255) ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAgggg < 2:1534196/93‑1 (MQ=255) gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAgggggg > 1:1666371/1‑91 (MQ=255) gCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGgag > 1:2855760/1‑93 (MQ=255) cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTTCCTATATCGCAAAAGCCCGGGAAAAA‑CG‑‑G‑GCGTCGCAGG‑TCCC‑TCAAAGGgaga > 1:4587355/1‑93 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGGAAAAGCCC‑GGAAAATCCC‑‑G‑GCTTCGCAAG‑TACC‑TCAAGGGgagca > 1:4140935/1‑91 (MQ=255) aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGgagga > 1:3216590/1‑91 (MQ=255) gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGaaa > 2:367432/1‑93 (MQ=255) gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGaaa > 2:2703296/1‑93 (MQ=255) tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAAc > 2:3318892/1‑93 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGGAC‑CC‑TCAAGGGGAGAAAACtt > 1:1284556/1‑93 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACtt > 1:4197072/1‑93 (MQ=255) tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CC‑‑GGGCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTa < 2:2275360/93‑1 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGTTACATATATGGCAAAATCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAg < 2:4067072/93‑1 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAg < 2:1949860/93‑1 (MQ=255) cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAggg < 1:784265/93‑1 (MQ=255) gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGc < 2:3910044/93‑1 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCGGG‑GT‑TCGCAGG‑TCCC‑CCAAGGGGAGAAAACTTAggggc > 2:2508064/1‑91 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGcc > 1:3918564/1‑93 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGcc < 1:2078765/93‑1 (MQ=255) aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCct > 1:3329894/1‑93 (MQ=255) atggtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CC‑‑GGGCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCctc < 2:677083/90‑1 (MQ=255) aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCctc < 1:1020261/93‑1 (MQ=255) tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTa < 2:1273965/93‑1 (MQ=255) tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTa < 2:4150698/93‑1 (MQ=255) gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTAt < 2:130383/93‑1 (MQ=255) gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTAt < 2:3303971/93‑1 (MQ=255) tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGGCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCCATg > 2:1630245/1‑93 (MQ=255) tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATg < 1:538367/93‑1 (MQ=255) gtcagGGAGTGGCTGGTACGTATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 2:480700/93‑1 (MQ=255) gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 2:2999988/93‑1 (MQ=255) cagGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 1:2390802/93‑1 (MQ=255) agGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc < 1:3110353/93‑1 (MQ=255) agGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:3007812/1‑93 (MQ=255) gggAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:1766907/1‑93 (MQ=255) gggAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:241424/1‑93 (MQ=255) gggAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CC‑‑GGGCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 1:1499344/1‑93 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 1:1416845/93‑1 (MQ=255) gTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 2:4116896/93‑1 (MQ=255) gTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt > 2:956580/1‑93 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CC‑‑GGGCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc > 1:98210/1‑93 (MQ=255) ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 2:3399515/93‑1 (MQ=255) ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa > 2:4242645/1‑93 (MQ=255) ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:1675130/93‑1 (MQ=255) ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:2609307/93‑1 (MQ=255) ggCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:395835/93‑1 (MQ=255) tGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa < 2:1197357/93‑1 (MQ=255) ggTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:4287924/93‑1 (MQ=255) gTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc > 1:3559288/1‑93 (MQ=255) gTACATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc > 1:3286258/1‑93 (MQ=255) aCATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 1:1031198/93‑1 (MQ=255) cATATATGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 1:4676919/1‑93 (MQ=255) cATATATGGCAAAAGCCC‑GGAAAAT‑CC‑‑GGGCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 2:3766126/1‑93 (MQ=255) atatatGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 1:4603493/1‑93 (MQ=255) tatatGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 1:1325728/1‑93 (MQ=255) atatGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:265810/93‑1 (MQ=255) tatGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg > 2:510672/1‑93 (MQ=255) tGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 2:1462522/93‑1 (MQ=255) tGGCAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 1:3142560/1‑93 (MQ=255) cAAAAGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 1:4016532/1‑93 (MQ=255) aaaaGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGCTGGttatt > 1:2239000/1‑93 (MQ=255) aaaaGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:2945734/1‑93 (MQ=255) aaaaGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt < 1:1949039/93‑1 (MQ=255) aaaaGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 1:3342342/1‑93 (MQ=255) aaaaGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt > 2:3647666/1‑93 (MQ=255) aaaaGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt < 2:3476585/93‑1 (MQ=255) aGCCC‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:1014414/93‑1 (MQ=255) ccc‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 2:1234236/93‑1 (MQ=255) ccc‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:3800201/93‑1 (MQ=255) ccc‑GGAAAAT‑CCG‑G‑GCGTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:3258482/93‑1 (MQ=255) cc‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:3605119/1‑93 (MQ=255) cc‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:3630673/1‑93 (MQ=255) cc‑GGAAAAT‑CCG‑G‑GCTTCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg < 2:3996342/93‑1 (MQ=255) ggcttCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAg > 1:3440693/5‑93 (MQ=255) gcttCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGc > 1:1127069/4‑93 (MQ=255) gcttCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGc < 2:3855718/90‑1 (MQ=255) gctgcGCAGG‑TCCC‑TCAAGGGGAGAAACCTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGc < 1:972014/89‑1 (MQ=255) tttCGCAGG‑T‑CCGTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTTCAAAGTCATTCTCGGGGATGCTTATTTTATTGTCAATTTATGAGCg < 2:672912/91‑1 (MQ=255) cttCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCg > 1:3452303/3‑93 (MQ=255) ttCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa > 1:377684/2‑93 (MQ=255) ttCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa > 2:106642/2‑93 (MQ=255) ttCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa < 2:3537196/92‑1 (MQ=255) ttCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa > 1:3856433/2‑93 (MQ=255) tCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGat < 2:2853594/93‑1 (MQ=255) tCGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGat < 1:3093857/93‑1 (MQ=255) cGCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGata < 2:3088012/93‑1 (MQ=255) gCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat > 1:4312881/1‑93 (MQ=255) gCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat < 1:718913/93‑1 (MQ=255) gCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat > 1:3535182/1‑93 (MQ=255) gCAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat < 2:82057/93‑1 (MQ=255) cAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg < 1:2896696/93‑1 (MQ=255) cAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg < 2:1820970/93‑1 (MQ=255) cAGG‑TCCC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg > 2:3969323/1‑93 (MQ=255) | TTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCC‑GGAAAAT‑CC‑‑T‑GC‑TCGCAGG‑T‑CC‑TCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG > NC_000913/3957469‑3957645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |