BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,103,519	+T	intergenic (‑268/‑530)	cpxR ← / → yiiP	transcriptional regulator in 2‑component system/putative transport system permease protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,103,519	1	.	T	100.0%	854.4 / NA	234	intergenic (‑268/‑530)	cpxR/yiiP	transcriptional regulator in 2‑component system/putative transport system permease protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (104/130); total (104/130)

Only 100 of 283 total aligned reads displayed.

GGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑G‑ACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGA  >  NC_000913/4103427‑4103605

 gCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGcgca‑g‑a                                                                                       >  1:2814170/1‑93 (MQ=255)

  ccTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgca‑gta                                                                                       <  2:1558930/93‑3 (MQ=255)

  ccTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgca‑gta                                                                                       <  2:1081115/93‑3 (MQ=255)

   cTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgca‑gtac                                                                                      <  2:1138058/93‑4 (MQ=255)

    tCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgca‑gtacg                                                                                     >  2:443382/1‑89 (MQ=255)

    tCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTAcgcagcgca‑gtacc                                                                                     >  2:3971833/1‑89 (MQ=255)

      caCGGTGGCAGTCAGTTCATTAAGCCCCGCTGCTGAAGTCAGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgca                                                                                   <  1:385295/92‑1 (MQ=255)

      aaCGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgca                                                                                   <  1:1873587/93‑1 (MQ=255)

        cGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgcaga                                                                                 <  2:3391383/93‑1 (MQ=255)

        cGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCgca‑gtacgcaga                                                                                 <  1:607209/93‑1 (MQ=255)

         gCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCagag                                                                                >  2:925024/1‑93 (MQ=255)

          cTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGc                                                                               <  1:973438/93‑1 (MQ=255)

            ggCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCa                                                                             <  2:4323429/93‑1 (MQ=255)

             gCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCat                                                                            <  1:3498211/93‑1 (MQ=255)

              cagtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCata                                                                           >  2:1393947/1‑93 (MQ=255)

              cagtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCata                                                                           <  1:2524316/93‑1 (MQ=255)

              cagtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCata                                                                           <  1:1060725/93‑1 (MQ=255)

                gtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATg                                                                         <  2:1644841/93‑1 (MQ=255)

                gtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATg                                                                         >  2:4379882/1‑93 (MQ=255)

                gtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATg                                                                         >  2:3002682/1‑93 (MQ=255)

                gtcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATg                                                                         >  1:3787129/1‑93 (MQ=255)

                 tcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGt                                                                        >  1:3050648/1‑93 (MQ=255)

                 tcagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGt                                                                        >  1:585842/1‑93 (MQ=255)

                 tcagtTCATTAAGCCACGCTGCTGAAGTCGGTTC‑GGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGtt                                                                       <  2:2053625/93‑1 (MQ=255)

                  cagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAATTTACGCAGCGCA‑GTACGCAGAGCCATATGtt                                                                       <  2:676011/93‑1 (MQ=255)

                  cagtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGtt                                                                       <  1:834284/93‑1 (MQ=255)

                    gtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCg                                                                     >  2:1512442/1‑93 (MQ=255)

                    gtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCg                                                                     >  1:2750279/1‑93 (MQ=255)

                    gtTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCg                                                                     >  1:3629985/1‑93 (MQ=255)

                     ttCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGa                                                                    >  2:3609758/1‑93 (MQ=255)

                     ttCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGa                                                                    <  2:3277371/93‑1 (MQ=255)

                     ttCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGa                                                                    <  2:578377/93‑1 (MQ=255)

                      tCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGAc                                                                   >  2:1874524/1‑93 (MQ=255)

                       cATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACg                                                                  <  2:4216005/93‑1 (MQ=255)

                        aTTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCAGGTGAAGAAATTACGCCGCGCACT‑ACGCAGAGCCATCTGTTCGAccg                                                                 >  2:1490560/1‑91 (MQ=255)

                         ttAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGc                                                                <  1:1245231/93‑1 (MQ=255)

                          tAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCa                                                               >  1:361808/1‑93 (MQ=255)

                             gCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATaa                                                            >  1:4425147/1‑93 (MQ=255)

                             gCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATaa                                                            >  1:4630422/1‑93 (MQ=255)

                             gCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATaa                                                            <  1:1016627/93‑1 (MQ=255)

                              ccACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAg                                                           >  2:2345790/1‑93 (MQ=255)

                               cACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGt                                                          >  1:1194208/1‑93 (MQ=255)

                               cACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGt                                                          <  2:393615/93‑1 (MQ=255)

                                aCGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGtt                                                         <  2:2204210/93‑1 (MQ=255)

                                 cGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGttt                                                        <  2:1807264/93‑1 (MQ=255)

                                   ctgctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTaa                                                      <  2:4195113/93‑1 (MQ=255)

                                    tgctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAAc                                                     <  1:3246053/93‑1 (MQ=255)

                                     gctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAAcc                                                    <  1:2186141/93‑1 (MQ=255)

                                      ctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCg                                                   >  1:4139651/1‑93 (MQ=255)

                                      ctgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCg                                                   <  2:833362/93‑1 (MQ=255)

                                       tgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGa                                                  >  2:3553689/1‑93 (MQ=255)

                                       tgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGa                                                  >  2:184258/1‑93 (MQ=255)

                                       tgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGa                                                  >  1:3705912/1‑93 (MQ=255)

                                       tgAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGa                                                  >  1:816536/1‑93 (MQ=255)

                                           gTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACAt                                              <  1:3944781/93‑1 (MQ=255)

                                            tCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATc                                             <  2:1214534/93‑1 (MQ=255)

                                            tCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATc                                             >  2:3055725/1‑93 (MQ=255)

                                            tCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGAGCC‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACAGAACATc                                             >  2:3111276/1‑93 (MQ=255)

                                             cGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCa                                            <  1:1421895/93‑1 (MQ=255)

                                             cGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCa                                            <  1:2078048/93‑1 (MQ=255)

                                              ggTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAg                                           <  2:728954/93‑1 (MQ=255)

                                                  cAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTc                                       <  2:4119246/93‑1 (MQ=255)

                                                   aGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTca                                      >  2:2839077/1‑93 (MQ=255)

                                                    ggCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcag                                     >  1:2380284/1‑93 (MQ=255)

                                                     gCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcagc                                    <  1:2703625/93‑1 (MQ=255)

                                                      cGATAACTGTCATCCGGTTGAAGAACTTACGCAGCACA‑GTCCGCAGAGCCATATGTTCGACGTCATAATTTTAACCGATCATCAGCGTcagca                                   <  2:2314695/93‑1 (MQ=255)

                                                       gATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTcagcag                                  >  1:3568933/1‑93 (MQ=255)

                                                        aTAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGa                                 <  2:2126928/93‑1 (MQ=255)

                                                        aTAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGa                                 <  1:1272616/93‑1 (MQ=255)

                                                         tAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGAt                                <  2:1741528/93‑1 (MQ=255)

                                                          aaCTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATg                               <  1:3996011/93‑1 (MQ=255)

                                                           aCTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGc                              <  1:2560497/93‑1 (MQ=255)

                                                           aCTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGc                              <  1:1564405/93‑1 (MQ=255)

                                                             tGGCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCga                            <  1:531491/93‑1 (MQ=255)

                                                              ggCATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCgag                           <  2:3771200/93‑1 (MQ=255)

                                                               gCATCCGGGGGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCgaga                          >  1:3394400/1‑93 (MQ=255)

                                                                cATCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGAt                         <  1:1763959/93‑1 (MQ=255)

                                                                 aTCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATc                        <  2:2796067/93‑1 (MQ=255)

                                                                 aTCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATc                        <  1:4212547/93‑1 (MQ=255)

                                                                 aTCCGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATc                        <  2:545893/93‑1 (MQ=255)

                                                                   ccGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCtt                      <  2:1708613/93‑1 (MQ=255)

                                                                    cGGGTGAAGAACTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTa                     >  1:2946314/1‑93 (MQ=255)

                                                                    cGGGTGAAGAACTTACGCAGCGCA‑GTAAGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTa                     <  1:317556/93‑1 (MQ=255)

                                                                     gggTGAAGAACTTACGCAGCGCA‑GTACGCAGAG‑CATATGTTCGACGGCATAAGTTTAAACGAACATCAGCGGCAGCAGATGGGGGGTTTTATg                   >  2:3270098/1‑93 (MQ=255)

                                                                          aagaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAAc               >  1:1344978/1‑93 (MQ=255)

                                                                            gaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAg             <  2:3491596/93‑1 (MQ=255)

                                                                            gaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAg             <  2:3727547/93‑1 (MQ=255)

                                                                            gaaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAg             <  1:4073047/93‑1 (MQ=255)

                                                                            gaaCGTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAg             <  1:2349845/93‑1 (MQ=255)

                                                                             aaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAgg            <  2:615845/93‑1 (MQ=255)

                                                                             aaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAgg            >  2:2406507/1‑93 (MQ=255)

                                                                             aaCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAgg            >  1:1718264/1‑93 (MQ=255)

                                                                              aCTTACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGc           >  2:3841595/1‑93 (MQ=255)

                                                                                ttACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGccc         >  2:2701244/1‑93 (MQ=255)

                                                                                 tACGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCg        >  2:2676158/1‑93 (MQ=255)

                                                                                  aCGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCgg       <  1:1646293/93‑1 (MQ=255)

                                                                                  aCGCAGCGCA‑GTACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATACGAGATCTTATGCAACAGGCCCgg       >  2:4597614/1‑93 (MQ=255)

                                                                                    gcagcgca‑gtACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCa     <  1:1993004/93‑1 (MQ=255)

                                                                                      agcgca‑gtACGCACAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACg   <  2:4141238/93‑1 (MQ=255)

                                                                                       gcgca‑gtACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGa  <  2:783844/93‑1 (MQ=255)

GGCCTCAACGCTGGCAGTCAGTTCATTAAGCCACGCTGCTGAAGTCGGTTCAGGCGATAACTGGCATCCGGGTGAAGAACTTACGCAGCGCA‑G‑ACGCAGAGCCATATGTTCGACGGCATAAGTTTAACCGAACATCAGCGTCAGCAGATGCGAGATCTTATGCAACAGGCCCGGCACGA  >  NC_000913/4103427‑4103605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`