Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,777,515 (T)8→9 intergenic (‑190/‑126) b1696 ← / → ydiQ putative ARAC‑type regulatory protein/putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,777,5071.T95.7% 326.0 / 5.7 93intergenic (‑182/‑134)b1696/ydiQputative ARAC‑type regulatory protein/putative transport protein
Reads supporting (aligned to +/- strand):  ref base . (3/1);  new base T (49/40);  total (52/41)
Fisher's exact test for biased strand distribution p-value = 6.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 115 total aligned reads displayed.

GAGCTAAACAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAGGCCATTT  >  NC_000913/1777415‑1777593
                                                                                             |                                                                                       
gagCTAAACAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCa                                                                                          >  1:982209/1‑93 (MQ=255)
gagCTAAACAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCa                                                                                          <  2:1769356/93‑1 (MQ=255)
gagCTAAACAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCa                                                                                          >  2:4130515/1‑93 (MQ=255)
    tAAACAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAtttt                                                                                     <  2:4638630/93‑1 (MQ=255)
    tAAACAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAtttt                                                                                     <  1:4354561/93‑1 (MQ=255)
    tAAACAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAtttt                                                                                     >  1:3223736/1‑93 (MQ=255)
    tAAACAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAtttt                                                                                     >  1:3096375/1‑93 (MQ=255)
     aaaCAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAttttt                                                                                    >  1:604286/1‑93 (MQ=255)
      aaCAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAtttttt                                                                                   <  1:2052961/93‑1 (MQ=255)
      aaCAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAtttttt                                                                                   >  1:2629014/1‑93 (MQ=255)
       aCAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAttttttt                                                                                  <  2:2257762/93‑1 (MQ=255)
       aCAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAttttttt                                                                                  <  1:4276904/93‑1 (MQ=255)
       aCAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAttttttt                                                                                  <  1:4052294/93‑1 (MQ=255)
        cAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAtttttttt                                                                                 >  1:2694250/1‑93 (MQ=255)
          aGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAtttttttttg                                                                               <  2:1192211/93‑3 (MQ=255)
           gATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCAtttttttttgc                                                                              >  1:957979/1‑90 (MQ=255)
              tattTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAg                                                                            >  1:722237/1‑93 (MQ=255)
                 ttACACTGAATGCAAGATTGTACGGTCATGGAATAGCTATATTGCCGCAAATGGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAtt                                                                        <  2:671909/93‑1 (MQ=255)
                 ttACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAtt                                                                        <  1:1382745/93‑1 (MQ=255)
                 ttACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAtt                                                                        <  2:2706667/93‑1 (MQ=255)
                 ttACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAtt                                                                        <  2:2316114/93‑1 (MQ=255)
                  tACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAttg                                                                       <  1:2250809/93‑1 (MQ=255)
                    cacTGAAAGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAttgtt                                                                     <  2:2791739/93‑1 (MQ=255)
                     acTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAttgttg                                                                    <  2:2571953/93‑1 (MQ=255)
                     acTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAttgttg                                                                    <  2:4144120/93‑1 (MQ=255)
                     acTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAttgttg                                                                    <  1:594216/93‑1 (MQ=255)
                      cTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTgg                                                                   <  1:4134280/93‑1 (MQ=255)
                        gAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCa                                                                 >  1:2758482/1‑93 (MQ=255)
                           tGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAgg                                                              >  2:2285418/1‑93 (MQ=255)
                           tGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAgg                                                              >  1:4165897/1‑93 (MQ=255)
                             cAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGaa                                                            <  1:3415928/93‑1 (MQ=255)
                              aaGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGaaa                                                           >  2:3224649/1‑93 (MQ=255)
                              aaGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGaaa                                                           <  2:3488497/93‑1 (MQ=255)
                               aGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGaaaa                                                          >  1:2384909/1‑93 (MQ=255)
                                gATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAAc                                                         >  2:2904596/1‑93 (MQ=255)
                                gATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAAc                                                         <  1:4196191/93‑1 (MQ=255)
                                gATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAAc                                                         <  2:1530287/93‑1 (MQ=255)
                                 aTTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACa                                                        <  1:448285/93‑1 (MQ=255)
                                  ttGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAg                                                       >  1:477624/1‑93 (MQ=255)
                                    gTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCt                                                     <  1:4095312/93‑1 (MQ=255)
                                    gTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCt                                                     <  1:206241/93‑1 (MQ=255)
                                     tACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCtt                                                    >  1:149460/1‑93 (MQ=255)
                                       cGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGc                                                  >  1:4337220/1‑93 (MQ=255)
                                       cGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGc                                                  <  1:3152224/93‑1 (MQ=255)
                                        ggTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCt                                                 >  1:3614536/1‑93 (MQ=255)
                                         gTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTc                                                >  1:4318489/1‑93 (MQ=255)
                                          tCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTcc                                               >  2:4289070/1‑93 (MQ=255)
                                           cATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTcct                                              >  2:4475286/1‑92 (MQ=255)
                                             tGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTc                                            >  1:3963014/1‑93 (MQ=255)
                                             tGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTc                                            >  2:3869614/1‑93 (MQ=255)
                                             aggAATAACTATATTGCCGCAAATTGCACTTTTGCTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTc                                            <  1:274646/92‑1 (MQ=255)
                                              ggAATAACTATATTGCCGCAAATTGCTCTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCg                                           <  1:3749109/93‑1 (MQ=255)
                                              ggAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCg                                           <  1:4132833/93‑1 (MQ=255)
                                              ggAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCg                                           <  1:3274418/93‑1 (MQ=255)
                                               gAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGa                                          >  1:1913412/1‑93 (MQ=255)
                                               gAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCGTGCTCCGTCGa                                          >  2:1523068/1‑93 (MQ=255)
                                                aaTAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGaa                                         >  1:4511166/1‑93 (MQ=255)
                                                 aTAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGaaa                                        >  1:3564306/1‑93 (MQ=255)
                                                  tAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGaaaa                                       >  1:1018237/1‑93 (MQ=255)
                                                  tAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGaaaa                                       <  1:3175391/93‑1 (MQ=255)
                                                  tAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGaaaa                                       <  2:416739/93‑1 (MQ=255)
                                                      tataTTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAAcccc                                   <  2:4124401/93‑1 (MQ=255)
                                                       atatTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCg                                  >  1:773913/1‑93 (MQ=255)
                                                       atatTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCg                                  >  1:4442280/1‑93 (MQ=255)
                                                         atTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCa                                >  2:1245606/1‑93 (MQ=255)
                                                           tGCCGCAAATTGCACTTTTGGTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGCAAACAGCTTGCTTCGTCCAAAACCCCGCAcc                              >  2:4268125/1‑93 (MQ=255)
                                                            tccGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCg                             <  2:3302726/92‑1 (MQ=255)
                                                            gCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCg                             >  1:1066416/1‑93 (MQ=255)
                                                             ccGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGc                            <  1:2489582/93‑1 (MQ=255)
                                                              cGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTa                          >  1:2142909/1‑93 (MQ=255)
                                                               gCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTa                          >  1:1368645/1‑93 (MQ=255)
                                                               gCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTa                          >  2:3861381/1‑93 (MQ=255)
                                                                 aaaTTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATc                        >  2:3376949/1‑93 (MQ=255)
                                                                    ttGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGca                     >  1:1307628/1‑93 (MQ=255)
                                                                    ttGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGca                     >  1:3551771/1‑93 (MQ=255)
                                                                     tGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGcac                    <  2:2778146/93‑1 (MQ=255)
                                                                      gCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGcaca                   <  1:3251895/93‑1 (MQ=255)
                                                                       cACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCacac                  >  1:3966357/1‑93 (MQ=255)
                                                                        aCTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACt                 >  1:1671034/1‑93 (MQ=255)
                                                                         cTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTa                >  1:1216199/1‑93 (MQ=255)
                                                                         cTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTa                >  1:2090701/1‑93 (MQ=255)
                                                                         cTTTTGTTTTAGCGATCGCATTTTTTTTTAAAAAGTTTATGGCAAGGAAAACAGCTTACTTCGTCGAAAAACCGAGAAAGCTATCGCACACtc                >  2:834449/1‑92 (MQ=255)
                                                                          ttttGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTAt               >  2:2177335/1‑93 (MQ=255)
                                                                          ttttGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTAt               >  2:2436722/1‑93 (MQ=255)
                                                                           tttGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTAtt              <  1:794933/93‑1 (MQ=255)
                                                                              gTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTc           >  2:1886256/1‑93 (MQ=255)
                                                                              gTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTc           >  2:565083/1‑93 (MQ=255)
                                                                              gTTTTAGCGATCGCATTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCa          <  2:392989/93‑1 (MQ=255)
                                                                              gTTTTACCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTc           <  1:33895/93‑1 (MQ=255)
                                                                               ttttAGCGATCGCATTTTTTTTTGCAAGATTTTTTGGAAGGGAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCTCTATATTTTCa          >  2:4120824/1‑93 (MQ=255)
                                                                               ttttAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCa          <  2:2093717/93‑1 (MQ=255)
                                                                               ttttAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCa          <  2:3778384/93‑1 (MQ=255)
                                                                                tttAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAg         <  1:677732/93‑1 (MQ=255)
                                                                                tttAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAg         <  2:2017789/93‑1 (MQ=255)
                                                                                 ttAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAgg        <  2:2980632/93‑1 (MQ=255)
                                                                                   aGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAGGcc      >  1:3468575/1‑93 (MQ=255)
                                                                                    gCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAGGCCa     <  2:2808762/93‑1 (MQ=255)
                                                                                    gCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAGGCCa     <  2:75928/93‑1 (MQ=255)
                                                                                       aTCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAGGCCAttt  >  1:521519/1‑93 (MQ=255)
                                                                                       aTCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAGGCCAttt  <  2:1691057/93‑1 (MQ=255)
                                                                                             |                                                                                       
GAGCTAAACAAGATTATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTATTTTCAGGCCATTT  >  NC_000913/1777415‑1777593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: