| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 279335 | NA (NA) | 171 (0.940) | 106/184 | 0.2 | 97.2% | coding (252/339 nt) | b4505 | hypothetical protein |
| ? | NC_000913 | 370982 = | 5 (0.030) | coding (535/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
Only 100 of 354 total aligned reads displayed.
GCATGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCACCTGGAA > NC_000913/370890‑371074 | tcagctaaacaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaa > 2:1152338‑M2/93‑93 (MQ=255)tcagctaaacaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggggttgcattgacagattgaatctacaa > 2:3707812‑M2/93‑93 (MQ=255) aTGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATt < 2:4119875‑M2/93‑2 (MQ=255) aTGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATt < 2:3144228‑M2/93‑2 (MQ=255) tGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtg > 2:437271‑M2/1‑91 (MQ=255) tGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtg < 1:4390162‑M2/93‑3 (MQ=255) gctaaacaacagaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATgg > 2:2586536‑M2/90‑93 (MQ=255) gAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgt < 2:878296‑M2/93‑4 (MQ=255) aGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgta > 2:3483469‑M2/1‑89 (MQ=255) tttgtttACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtaga > 1:2865486‑M2/1‑87 (MQ=255) aacagaccgagaaagacactgaagttcaaaacaccgaaagaggtaattgaaaggggtgttgcattgacagattgaatctacaATGGATATCtt > 1:2516769‑M2/83‑93 (MQ=255) gaccgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGtt < 1:4266547‑M2/15‑1 (MQ=255) aCGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaatt > 2:1518354‑M2/1‑80 (MQ=255) cgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGttttt < 1:3768307‑M2/18‑1 (MQ=255) gagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTg < 1:3952608‑M2/19‑1 (MQ=255) gATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtca < 1:1223018‑M2/93‑19 (MQ=255) aTGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaa > 1:2794692‑M2/1‑74 (MQ=255) tGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaac < 2:2976894‑M2/93‑21 (MQ=255) aagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATAc > 1:1143856‑M2/71‑93 (MQ=255) ccAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgc > 1:2743420‑M2/1‑71 (MQ=255) acactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAg < 1:1615735‑M2/26‑1 (MQ=255) acactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAg < 2:1558770‑M2/26‑1 (MQ=255) acactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAg < 1:4089919‑M2/26‑1 (MQ=255) aaCCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaa < 2:683420‑M2/93‑25 (MQ=255) cactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGc > 2:3050323‑M2/67‑93 (MQ=255) actgaagctcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCg > 2:4455433‑M2/66‑93 (MQ=255) tgaagttcaaaacaccgaaagagataattgaaaggtgtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGAt < 1:4469074‑M2/30‑1 (MQ=255) tgaagtgcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGAt < 2:3556997‑M2/30‑1 (MQ=255) gAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagt < 2:252652‑M2/93‑29 (MQ=255) gAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagt < 1:3184490‑M2/93‑29 (MQ=255) aaGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagtt < 1:4582224‑M2/93‑30 (MQ=255) aGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagtta > 1:2981123‑M2/1‑63 (MQ=255) gTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatg < 1:3409888‑M2/93‑33 (MQ=255) gTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatg > 1:3314456‑M2/1‑61 (MQ=255) tATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgt < 2:1281952‑M2/93‑34 (MQ=255) ttAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGGAAACCTGAAGCTGATGATtgtagagtcaattggtcaacgcaacagttatgtga < 1:2087366‑M2/93‑36 (MQ=255) aaaacacagaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGa < 1:3711403‑M2/38‑1 (MQ=255) aGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaa < 1:3983849‑M2/93‑39 (MQ=255) acaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGc > 2:2719763‑M2/53‑93 (MQ=255) ccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCt < 1:3615902‑M2/44‑1 (MQ=255) cgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTg > 2:1651669‑M2/49‑93 (MQ=255) cTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatgg > 2:3276618‑M2/1‑50 (MQ=255) cTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatgg > 1:4198898‑M2/1‑50 (MQ=255) tGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggg < 1:259018‑M2/93‑45 (MQ=255) gAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatgggg > 1:1917914‑M2/1‑48 (MQ=255) gAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatgggg > 2:486896‑M2/1‑48 (MQ=255) gAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatgggg < 1:3856089‑M2/93‑46 (MQ=255) aaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGtt < 1:500929‑M2/47‑1 (MQ=255) aTCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggtt < 2:2687942‑M2/93‑48 (MQ=255) tCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttg < 1:958200‑M2/93‑49 (MQ=255) tCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttg < 2:3880482‑M2/93‑49 (MQ=255) gagataattgaaaggggtgttgcattcacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGACCTGTTTGa > 2:456623‑M2/44‑93 (MQ=255) gataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAg > 2:1900519‑M2/42‑93 (MQ=255) gataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAg < 2:553127‑M2/52‑1 (MQ=255) gCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcgg < 2:2632564‑M2/93‑52 (MQ=255) tttATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggag < 2:2137223‑M2/93‑54 (MQ=255) ttgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgcgc < 1:3582736‑M2/57‑1 (MQ=255) tCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttt > 2:4508165‑M2/1‑36 (MQ=255) tCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttt > 2:2447234‑M2/1‑36 (MQ=255) gaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCt > 2:3816808‑M2/35‑93 (MQ=255) gTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttt > 2:4273430‑M2/1‑34 (MQ=255) tCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggtttttt > 2:1074235‑M2/1‑33 (MQ=255) tCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggtttttt < 1:1788716‑M2/93‑61 (MQ=255) aggggtggtgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaa < 1:1549686‑M2/62‑1 (MQ=255) aGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttga > 2:204380‑M2/1‑31 (MQ=255) gCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaa > 2:2396814‑M2/1‑30 (MQ=255) gtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaataat > 2:3914547‑M2/28‑93 (MQ=255) cGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatg < 1:599731‑M2/93‑66 (MQ=255) cGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatg > 2:735055‑M2/1‑28 (MQ=255) cGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatg < 1:1896185‑M2/93‑66 (MQ=255) aCTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgag > 2:4642377‑M2/1‑26 (MQ=255) tgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGc > 2:4219035‑M2/24‑93 (MQ=255) tAACGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaccagttatgtgaaaacatggggttgcggaggtcagttgaatgagac < 2:3183113‑M2/93‑70 (MQ=255) gcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCt > 1:836583‑M2/23‑93 (MQ=255) attgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGt < 2:2917355‑M2/73‑1 (MQ=255) ttgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTc > 1:3875584‑M2/20‑93 (MQ=255) cGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaa > 1:2930328‑M2/1‑21 (MQ=255) gAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaac > 2:3414710‑M2/1‑20 (MQ=255) gacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTcgc > 2:2263744‑M2/18‑93 (MQ=255) aaaCCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacat > 1:3013199‑M2/1‑18 (MQ=255) ccTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacattta > 2:1809954‑M2/1‑15 (MQ=255) cTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgactgagacgaacatttac < 2:366545‑M2/93‑80 (MQ=255) tGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttaca > 2:137644‑M2/1‑13 (MQ=255) tgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGa < 1:1463967‑M2/83‑1 (MQ=255) gaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGAt > 1:859157‑M2/10‑93 (MQ=255) aatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATc < 2:2797968‑M2/85‑1 (MQ=255) aGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagca < 1:3538111‑M2/93‑84 (MQ=255) gCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcag < 1:2250248‑M2/93‑85 (MQ=255) atctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCa < 2:2856448‑M2/86‑1 (MQ=255) tctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGAGCGCCTGAATAATATGCTGTCGCGCCGCGATCAc > 1:1973686‑M2/7‑93 (MQ=255) tgatgaTtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcagag < 2:3100648‑M2/93‑87 (MQ=255) tgatgaTtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcagag > 1:716154‑M2/1‑7 (MQ=255) ctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCAcc > 1:47255‑M2/6‑93 (MQ=255) ctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCAcc < 2:3328579‑M2/88‑1 (MQ=255) tacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCACCt < 1:3130724‑M2/89‑1 (MQ=255) gatgattgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggagggtttttgaatgagacgaacatttacagcagagg < 1:2670181‑M2/93‑88 (MQ=255) atgattgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcagagga > 2:4380068‑M2/1‑5 (MQ=255) tgattgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcagaggaa < 1:2381507‑M2/93‑90 (MQ=255) gattgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacgaacatttacagcagaggaaa < 1:4445047‑M2/93‑91 (MQ=255) atgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCACCTGGaa > 2:1751900/1‑93 (MQ=255) | GCATGAGTTTGTTTACGCCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGCGCCGCGATCACCTGGAA > NC_000913/370890‑371074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |