BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	294,990	T→C	H444R (CAC→CGC)	intF ←	putative phage integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	294,990	0	T	C	100.0%	670.4 / NA	211	H444R (CAC→CGC)	intF	putative phage integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (124/87); total (124/87)

Only 100 of 217 total aligned reads displayed.

TATGTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATA  >  NC_000913/294900‑295079

tatGTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCgcgc                                                                                         >  2:4600809/1‑93 (MQ=255)

  tGTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCa                                                                                       >  2:1584259/1‑93 (MQ=255)

   gTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCAt                                                                                      >  1:3300611/1‑93 (MQ=255)

   gTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCAt                                                                                      <  2:4381414/93‑1 (MQ=255)

   gTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCAt                                                                                      <  2:1449386/93‑1 (MQ=255)

    ttGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCAtt                                                                                     >  2:260647/1‑93 (MQ=255)

    ttGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCAtt                                                                                     >  1:959804/1‑93 (MQ=255)

     tGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCAttt                                                                                    <  2:318570/93‑1 (MQ=255)

       aTTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTc                                                                                  >  1:2204024/1‑93 (MQ=255)

        tttttAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCg                                                                                 >  1:1010311/1‑93 (MQ=255)

          tttAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTa                                                                               <  1:239761/93‑1 (MQ=255)

           ttAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTaa                                                                              >  1:3222672/1‑93 (MQ=255)

            tAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAAc                                                                             >  2:588765/1‑93 (MQ=255)

              aTGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAg                                                                           >  2:2038397/1‑93 (MQ=255)

              aTGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAg                                                                           <  1:2321191/93‑1 (MQ=255)

              aTGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAg                                                                           >  1:2560715/1‑93 (MQ=255)

               tGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGa                                                                          <  2:3120738/93‑1 (MQ=255)

               tGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGa                                                                          >  2:1710359/1‑93 (MQ=255)

               tGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGa                                                                          >  1:2288329/1‑93 (MQ=255)

                gaaaTCAACTCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGAt                                                                         <  2:491789/91‑1 (MQ=255)

                 gAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATc                                                                        <  1:4624037/93‑1 (MQ=255)

                 gAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATc                                                                        <  1:4027385/93‑1 (MQ=255)

                 gAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATc                                                                        >  1:1141715/1‑93 (MQ=255)

                   aTCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTa                                                                      <  2:2431764/93‑1 (MQ=255)

                    tCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTaa                                                                     >  2:1264616/1‑93 (MQ=255)

                    tCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTaa                                                                     <  2:3822913/93‑1 (MQ=255)

                        cGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGga                                                                 <  1:4284703/93‑1 (MQ=255)

                           atatCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGgacga                                                              >  1:384806/1‑93 (MQ=255)

                           atatCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGgacga                                                              >  1:2143460/1‑93 (MQ=255)

                            tatCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGgacgac                                                             >  1:1421700/1‑93 (MQ=255)

                             atCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGacgacg                                                            >  2:3094610/1‑93 (MQ=255)

                             atCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGacgacg                                                            <  2:3215054/93‑1 (MQ=255)

                              tCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACgg                                                           >  1:919316/1‑93 (MQ=255)

                              tCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACgg                                                           >  1:4598691/1‑93 (MQ=255)

                                aaCGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCg                                                         >  2:4167535/1‑93 (MQ=255)

                                 aCGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATTTAACGGtcggcgtggt                                                        >  2:339459/1‑89 (MQ=255)

                                 aCGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGa                                                        <  2:1191656/93‑1 (MQ=255)

                                 aCGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGa                                                        <  1:1485460/93‑1 (MQ=255)

                                 aCGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGa                                                        >  2:2329148/1‑93 (MQ=255)

                                  cGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGAt                                                       >  2:2936084/1‑93 (MQ=255)

                                  cGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGAt                                                       >  1:1082055/1‑93 (MQ=255)

                                  cGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGAt                                                       <  2:1244912/93‑1 (MQ=255)

                                   gttgttTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACAGCGATa                                                      >  2:2479056/1‑93 (MQ=255)

                                    ttgttTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAg                                                     >  1:4398001/1‑93 (MQ=255)

                                    ttgttTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAg                                                     <  2:35526/93‑1 (MQ=255)

                                      gttTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAgtg                                                   <  1:4162649/93‑1 (MQ=255)

                                      gttTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAgtg                                                   >  1:3461469/1‑93 (MQ=255)

                                         ttttATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGttt                                                <  1:61661/93‑1 (MQ=255)

                                           ttATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGttttt                                              >  2:2548416/1‑93 (MQ=255)

                                           ttATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGttttt                                              <  1:725432/93‑1 (MQ=255)

                                             aTGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCg                                            <  2:1085146/93‑1 (MQ=255)

                                              tGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTctg                                           <  2:3287045/93‑3 (MQ=255)

                                              tGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCgg                                           >  2:4493620/1‑93 (MQ=255)

                                              tGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCgg                                           >  2:294257/1‑93 (MQ=255)

                                                gTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCa                                         >  2:531026/1‑93 (MQ=255)

                                                gTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCa                                         <  2:3699500/93‑1 (MQ=255)

                                                 tAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCaa                                        >  2:3949500/1‑93 (MQ=255)

                                                 tAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCaa                                        >  1:2810393/1‑93 (MQ=255)

                                                  aaTACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAag                                       >  2:3036866/1‑93 (MQ=255)

                                                  aaTACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAag                                       <  2:2282980/93‑1 (MQ=255)

                                                   aTACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAaga                                      <  1:3438446/93‑1 (MQ=255)

                                                    tACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAagag                                     <  1:1619879/93‑1 (MQ=255)

                                                    tACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAagag                                     >  1:2443955/1‑93 (MQ=255)

                                                    tACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGAAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAagag                                     >  1:1263891/1‑93 (MQ=255)

                                                     aCCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAgc                                    <  2:2867525/93‑1 (MQ=255)

                                                      ccTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAgcg                                   >  2:685071/1‑93 (MQ=255)

                                                        tGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCt                                 <  1:1032015/93‑1 (MQ=255)

                                                        tGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCt                                 <  2:216069/93‑1 (MQ=255)

                                                        tGCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCt                                 >  1:4142306/1‑93 (MQ=255)

                                                         gCTTCATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTg                                <  2:4366424/93‑1 (MQ=255)

                                                             cATTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGtt                            <  1:11875/93‑1 (MQ=255)

                                                              aTTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGttt                           >  2:1993947/1‑93 (MQ=255)

                                                              aTTTAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGttt                           >  1:1851088/1‑93 (MQ=255)

                                                               tttAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTtg                          <  2:783086/93‑1 (MQ=255)

                                                                 tAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTtgtg                        >  2:177489/1‑93 (MQ=255)

                                                                 tAAGATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTtgtg                        >  1:4639663/1‑93 (MQ=255)

                                                                    gATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTcc                     >  1:3677528/1‑93 (MQ=255)

                                                                    gATCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTcc                     >  2:4300673/1‑93 (MQ=255)

                                                                      tCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCa                   >  2:1503092/1‑93 (MQ=255)

                                                                      tCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCa                   >  2:1328943/1‑93 (MQ=255)

                                                                      tCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCa                   <  1:4471608/93‑1 (MQ=255)

                                                                      tCCATGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCa                   >  1:1714429/1‑93 (MQ=255)

                                                                          tGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAAt               >  1:1782387/1‑93 (MQ=255)

                                                                          tGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAAt               >  1:4353280/1‑93 (MQ=255)

                                                                          tGTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAAt               <  2:3857158/93‑1 (MQ=255)

                                                                           gTCTCAATTTTCTCGCGCCATTTTCGTAACAGATCTAATGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAAtt              >  1:4179983/1‑93 (MQ=255)

                                                                            tctcAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAAttt             <  2:3572415/93‑1 (MQ=255)

                                                                              tcAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGa           >  2:188354/1‑93 (MQ=255)

                                                                              tcAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGa           <  2:2192992/93‑1 (MQ=255)

                                                                              tcAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGACTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGa           >  1:1978355/1‑93 (MQ=255)

                                                                               cAATTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAg          >  1:474842/1‑93 (MQ=255)

                                                                                 aTTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGca        >  2:3767844/1‑93 (MQ=255)

                                                                                 aTTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGca        <  2:2249655/93‑1 (MQ=255)

                                                                                 aTTTTCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGca        >  1:1943161/1‑93 (MQ=255)

                                                                                   tttCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGGTAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGcaac      >  1:2989113/1‑93 (MQ=255)

                                                                                   tttCTCGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGcaac      <  1:358322/93‑1 (MQ=255)

                                                                                     tctcGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGcaacaa    <  1:3162276/93‑1 (MQ=255)

                                                                                     tctcGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGcaacaa    <  2:2772184/93‑1 (MQ=255)

                                                                                       tcGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATa  >  1:2688999/1‑93 (MQ=255)

                                                                                       tcGCGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATa  <  2:3085995/93‑1 (MQ=255)

TATGTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATA  >  NC_000913/294900‑295079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`