Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,925,821 | T→C | intergenic (+127/‑430) | ygdH → / → sdaC | hypothetical protein/putative serine transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,925,821 | 0 | T | C | 99.5% | 675.0 / NA | 209 | intergenic (+127/‑430) | ygdH/sdaC | hypothetical protein/putative serine transporter |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (115/93); minor base A (1/0); total (116/93) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 217 total aligned reads displayed.
CTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGAT > NC_000913/2925731‑2925910 | ctcGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAacat < 2:904916/93‑1 (MQ=255) ctcGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAacat < 2:164707/93‑1 (MQ=255) cGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGt < 1:2452257/93‑1 (MQ=255) gTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTc > 2:1894167/1‑93 (MQ=255) ttttGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCAt > 2:1592623/1‑93 (MQ=255) ttttGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCAt < 1:1992950/93‑1 (MQ=255) tttGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATa < 1:1601094/93‑1 (MQ=255) aCTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTa > 2:2136541/1‑93 (MQ=255) aCTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTa > 2:4197372/1‑93 (MQ=255) cTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTAt > 2:785182/1‑93 (MQ=255) ttACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATg > 1:4210545/1‑93 (MQ=255) tACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGt < 2:3233599/93‑1 (MQ=255) cTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTg > 1:3620205/1‑93 (MQ=255) tcatcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGc < 2:3341917/93‑1 (MQ=255) tcatcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGc < 2:3783842/93‑1 (MQ=255) tcatcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGc < 1:571620/93‑1 (MQ=255) tcatcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGc > 1:4100605/1‑93 (MQ=255) catcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCa > 1:2636376/1‑93 (MQ=255) atcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCaa > 1:1467777/1‑93 (MQ=255) tcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAAc > 2:275926/1‑93 (MQ=255) tcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAAc > 1:2563399/1‑93 (MQ=255) aaCTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGc > 1:12825/1‑93 (MQ=255) aaCTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGc > 2:360426/1‑93 (MQ=255) aCTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCa > 2:456944/1‑93 (MQ=255) tcatttcattTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCaaa > 1:2856184/1‑93 (MQ=255) tcatttcattTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCaaa > 2:4000365/1‑93 (MQ=255) atttcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACg > 1:2759180/1‑93 (MQ=255) tttcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGt > 2:4317523/1‑93 (MQ=255) catttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTc < 1:1337894/93‑1 (MQ=255) atttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTcc > 1:2931774/1‑93 (MQ=255) atttGTTATATGAATGTTTCTTACCAACCTCACGCGACAAATATCATCACAGTTAACATGGCCTACCATTTATGTTGTAACGCAAACGTTTcc > 2:803698/1‑93 (MQ=255) tttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTccc < 1:4614793/93‑1 (MQ=255) ttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCt < 1:166137/93‑1 (MQ=255) gTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAt > 1:3893425/1‑93 (MQ=255) ttATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAtt < 2:2551846/93‑1 (MQ=255) tataTGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAttt < 2:1786767/93‑1 (MQ=255) tatGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTc > 1:251098/1‑93 (MQ=255) atGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCa > 2:624163/1‑93 (MQ=255) atGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCa > 2:3532059/1‑93 (MQ=255) gAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATa > 2:1077873/1‑93 (MQ=255) aaTGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATaa > 2:1954934/1‑93 (MQ=255) aTGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATaaa < 1:849796/93‑1 (MQ=255) gTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAAcc > 2:3669291/1‑93 (MQ=255) gTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAAcc > 1:3242938/1‑93 (MQ=255) tttCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGt < 1:330003/59‑1 (MQ=255) ttCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGt > 1:93287/1‑93 (MQ=255) tCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTa > 2:3876264/1‑93 (MQ=255) tCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTa > 2:1374795/1‑93 (MQ=255) ttACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAtt < 1:1762655/93‑1 (MQ=255) ttACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAtt > 2:2533055/1‑93 (MQ=255) ttACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAtt > 2:2920740/1‑93 (MQ=255) ttACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAtt < 2:2951551/93‑1 (MQ=255) tACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAttt < 1:128551/93‑1 (MQ=255) ccaccCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTa < 2:4624533/93‑1 (MQ=255) caccCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTAt > 2:2157583/1‑93 (MQ=255) caccCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTAt < 1:1007362/93‑1 (MQ=255) ccccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATc < 1:2230170/92‑1 (MQ=255) cgcTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCg > 2:4488128/3‑93 (MQ=255) cccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCg < 2:2081109/93‑1 (MQ=255) ccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGc > 1:2103505/1‑93 (MQ=255) cTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCt > 1:502712/1‑93 (MQ=255) cTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCt > 2:2589897/1‑93 (MQ=255) cTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTAATAAACCGAATTTTATCGCt > 2:2661618/1‑93 (MQ=255) tCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTa < 1:497706/93‑1 (MQ=255) tCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTa > 2:217840/1‑93 (MQ=255) tCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTa > 2:2313353/1‑93 (MQ=255) cACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCtgt < 2:2880682/93‑3 (MQ=255) cACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTAt > 2:1042643/1‑93 (MQ=255) aCGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATg < 1:3661245/93‑1 (MQ=255) aCGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATg > 2:31308/1‑93 (MQ=255) cgcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGa < 2:1975119/93‑1 (MQ=255) gcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGaa < 1:3391387/93‑1 (MQ=255) gcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGaa < 2:3005226/93‑1 (MQ=255) gACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGaaaa < 2:2703588/93‑1 (MQ=255) gACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGaaaa > 1:3017156/1‑93 (MQ=255) aCAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCGTAAACCGTATTTTATCGCTATGaaaaa > 1:1356120/1‑93 (MQ=255) aaaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGa < 1:1574404/93‑1 (MQ=255) aaaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGa > 1:629282/1‑93 (MQ=255) aaaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGa < 1:189028/93‑1 (MQ=255) aaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGaa < 1:4039115/93‑1 (MQ=255) aaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGaa > 1:3477289/1‑93 (MQ=255) atatCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGaaa < 2:330060/93‑1 (MQ=255) atatCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGaaa < 2:3453420/93‑1 (MQ=255) atatCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGaaa < 2:1266018/93‑1 (MQ=255) atatCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGaaa < 2:505550/93‑1 (MQ=255) tatCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAAt > 2:3847849/1‑93 (MQ=255) atcatcACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAAtt < 1:2068667/93‑1 (MQ=255) tcatcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCTCTATGAAAAAGAAATTa < 1:3647482/93‑1 (MQ=255) tcatcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTa < 1:3910056/93‑1 (MQ=255) catcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTAt < 1:3235138/93‑1 (MQ=255) atcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATc < 2:2439274/93‑1 (MQ=255) tcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCg > 2:440655/1‑93 (MQ=255) acaGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGcc > 1:1937265/1‑93 (MQ=255) acaGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGcc > 1:2545761/1‑93 (MQ=255) aGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCAt > 1:2357679/1‑93 (MQ=255) aGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCAt > 2:348883/1‑93 (MQ=255) aGTTAACATGTCATACAAATTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCAt > 1:4473873/1‑93 (MQ=255) gTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATg > 1:1325294/1‑93 (MQ=255) ttAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGa < 2:845405/93‑1 (MQ=255) tAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGAt > 1:3102934/1‑93 (MQ=255) | CTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGAT > NC_000913/2925731‑2925910 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |