BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,977,219	T→C	H59H (CAT→CAC)	lysR →	LysR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,977,219	0	T	C	100.0%	602.9 / NA	188	H59H (CAT→CAC)	lysR	LysR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (90/98); total (90/98)

Only 100 of 193 total aligned reads displayed.

CACCTCACAGCCAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACATCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGAAAGTCTGC  >  NC_000913/2977129‑2977307

cacCTCACAGCCAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACAccc                                                                                        <  1:3872939/93‑1 (MQ=255)

cacCTCACAGCCAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGCACGTGGGCGATTACAccc                                                                                        >  1:865682/1‑93 (MQ=255)

   cgcacaGCCAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTAc                                                                                     <  1:4107895/91‑1 (MQ=255)

    tCACAGCCAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTAcc                                                                                    >  1:1257039/1‑93 (MQ=255)

      ccaGCCAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGt                                                                                  <  2:2259397/92‑1 (MQ=255)

      acaGCCAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGt                                                                                  >  2:2710458/1‑93 (MQ=255)

         gCCAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCa                                                                               >  1:377482/1‑93 (MQ=255)

          ccAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGcca                                                                              >  1:1724806/1‑91 (MQ=255)

           cAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAg                                                                             <  2:4627979/93‑1 (MQ=255)

             aCCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGa                                                                           >  2:324415/1‑93 (MQ=255)

               cGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACt                                                                         <  2:3369525/93‑1 (MQ=255)

                 tCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGc                                                                       >  1:2180969/1‑93 (MQ=255)

                   aGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGt                                                                     <  1:3969485/93‑1 (MQ=255)

                    gCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTc                                                                    <  2:1183461/93‑1 (MQ=255)

                    gCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTc                                                                    <  2:1543440/93‑1 (MQ=255)

                      cgcgAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTg                                                                  >  1:3286826/1‑93 (MQ=255)

                       gcgAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGt                                                                 <  1:186724/93‑1 (MQ=255)

                       gcgAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGt                                                                 >  2:2475534/1‑93 (MQ=255)

                       gcgAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGt                                                                 <  1:2900794/93‑1 (MQ=255)

                       gcgAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGt                                                                 <  2:1017854/93‑1 (MQ=255)

                        cgAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGtt                                                                <  1:2465546/93‑1 (MQ=255)

                         gAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGttt                                                               <  1:2428936/93‑1 (MQ=255)

                         gAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGttt                                                               >  1:4224868/1‑93 (MQ=255)

                             ttGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTgaag                                                           >  1:2522186/1‑93 (MQ=255)

                             ttGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTgaag                                                           <  2:51764/93‑1 (MQ=255)

                              tGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTGCGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTgaaga                                                          <  1:1447441/93‑1 (MQ=255)

                              tGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTgaaga                                                          <  2:3058013/93‑1 (MQ=255)

                               gcgcgcTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTgaagca                                                         >  1:4200924/1‑91 (MQ=255)

                               gcgcgcTTTGAGAAGGTGATCGGGCAGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTgaagaa                                                         <  1:4527883/93‑1 (MQ=255)

                                cgcgcTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGaagaag                                                        <  2:3538149/93‑1 (MQ=255)

                                cgcgcTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGaagaag                                                        >  1:297040/1‑93 (MQ=255)

                                 gcgcTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGt                                                       <  2:1884792/93‑1 (MQ=255)

                                 gcgcTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGt                                                       <  1:3064431/93‑1 (MQ=255)

                                  cgcTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTg                                                      <  1:626239/93‑1 (MQ=255)

                                   gcTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGc                                                     <  1:4306823/93‑1 (MQ=255)

                                   gcTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGc                                                     >  1:3844109/1‑93 (MQ=255)

                                     tttGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCaa                                                   <  2:489216/93‑1 (MQ=255)

                                     tttGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCaa                                                   >  2:2550629/1‑93 (MQ=255)

                                     tttGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCaa                                                   <  1:1308130/93‑1 (MQ=255)

                                     tttGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCCTGCAAGGACTGCGTCTGTTTGTAGAAGTGGaa                                                   >  2:3285114/1‑93 (MQ=255)

                                      ttGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAAc                                                  <  2:4413638/93‑1 (MQ=255)

                                        gagaAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGa                                                <  2:588087/93‑1 (MQ=255)

                                        gagaAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGa                                                >  2:1060125/1‑93 (MQ=255)

                                        gagaAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGa                                                <  2:352600/93‑1 (MQ=255)

                                          gaAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATc                                              >  1:3814733/1‑93 (MQ=255)

                                          gaAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATc                                              >  2:3598125/1‑93 (MQ=255)

                                           aaGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATcc                                             <  2:4101744/93‑1 (MQ=255)

                                            aGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCt                                            >  1:4278771/1‑93 (MQ=255)

                                            aGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCt                                            >  1:4557796/1‑93 (MQ=255)

                                            aGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCt                                            <  1:2019412/93‑1 (MQ=255)

                                             ggcgATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCATg                                           >  2:920438/4‑93 (MQ=255)

                                             ggTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTg                                           <  1:4080319/93‑1 (MQ=255)

                                               tGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGt                                         <  1:3581270/93‑1 (MQ=255)

                                                 aTCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTAc                                       <  1:2405102/93‑1 (MQ=255)

                                                  tCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACg                                      >  1:1052149/1‑93 (MQ=255)

                                                  tCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACg                                      <  1:2150204/93‑1 (MQ=255)

                                                     ggCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGAc                                   <  2:3908473/93‑1 (MQ=255)

                                                         gAAATTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGa                               <  2:3016682/93‑1 (MQ=255)

                                                          aaaTTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGAt                              <  1:2761077/93‑1 (MQ=255)

                                                          aaaTTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGAt                              <  1:2850625/93‑1 (MQ=255)

                                                            aTTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCg                            <  1:524164/93‑1 (MQ=255)

                                                            aTTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCg                            <  1:1335514/93‑1 (MQ=255)

                                                            aTTGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCg                            >  1:3189827/1‑93 (MQ=255)

                                                             ttGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGc                           <  1:652537/93‑1 (MQ=255)

                                                             ttGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGc                           <  2:2219945/93‑1 (MQ=255)

                                                             ttGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGc                           >  1:3388581/1‑93 (MQ=255)

                                                              tGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCa                          >  2:974412/1‑93 (MQ=255)

                                                              tGTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCa                          <  1:487953/93‑1 (MQ=255)

                                                               gTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCAt                         >  2:1942000/1‑93 (MQ=255)

                                                               gTTTGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCAt                         >  1:182037/1‑93 (MQ=255)

                                                                  tGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGt                      >  2:1910245/1‑93 (MQ=255)

                                                                  tGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGt                      <  1:4589428/93‑1 (MQ=255)

                                                                  tGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGt                      <  1:2091829/93‑1 (MQ=255)

                                                                  tGAGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGt                      <  1:3714767/93‑1 (MQ=255)

                                                                    aGCGCGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCa                    <  2:655208/93‑1 (MQ=255)

                                                                     gcgcGTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAg                   <  1:1010063/93‑1 (MQ=255)

                                                                      cgcgTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAgc                  >  2:4341791/1‑93 (MQ=255)

                                                                        cgTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAgcgc                >  1:730153/1‑93 (MQ=255)

                                                                         gTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGcgcc               <  2:2442244/93‑1 (MQ=255)

                                                                         gTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGcgcc               <  1:4047383/93‑1 (MQ=255)

                                                                         gTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGcgcc               >  2:2849275/1‑93 (MQ=255)

                                                                         gTACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGcgcc               <  1:4474126/93‑1 (MQ=255)

                                                                          tACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGcgccg              >  1:1236861/1‑93 (MQ=255)

                                                                          tACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGcgccg              >  2:6645/1‑93 (MQ=255)

                                                                          tACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGcgccg              >  1:216341/1‑93 (MQ=255)

                                                                          tACGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGcgacg              >  2:2313335/1‑93 (MQ=255)

                                                                           aCGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGcgccgc             >  2:3449625/1‑93 (MQ=255)

                                                                            cGTGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCa            <  2:3980389/93‑1 (MQ=255)

                                                                             gTGGGCGATTACACCCTACCGTGCAAGGTCTGCGTCTGTTTGAAGAAGTGCAAGGATCTTGGTACGCATCGGATAATATTTTCAGctccgcca           >  2:449573/1‑91 (MQ=255)

                                                                              tGGGCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGa          <  2:443102/93‑1 (MQ=255)

                                                                               gggCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGaa         >  2:4007017/1‑93 (MQ=255)

                                                                                ggCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGaaa        >  1:4328755/1‑93 (MQ=255)

                                                                                ggCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGaaa        <  1:1574281/93‑1 (MQ=255)

                                                                                ggCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGaaa        >  1:3122408/1‑93 (MQ=255)

                                                                                 gCGATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGAAAg       <  1:3241548/93‑1 (MQ=255)

                                                                                   gATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGAAAGTc     <  1:1535394/93‑1 (MQ=255)

                                                                                   gATTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGAAAGTc     >  2:160511/1‑93 (MQ=255)

                                                                                    aTTACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGAGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGAAAGTCt    >  2:3412431/1‑93 (MQ=255)

                                                                                     ttACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGAAAGTCTg   <  2:4017524/93‑1 (MQ=255)

                                                                                      tACACCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGAAAGTCTgc  <  1:2905967/93‑1 (MQ=255)

CACCTCACAGCCAACCGTCAGCCGCGAACTTGCGCGCTTTGAGAAGGTGATCGGGCTGAAATTGTTTGAGCGCGTACGTGGGCGATTACATCCTACCGTGCAAGGACTGCGTCTGTTTGAAGAAGTGCAACGATCCTGGTACGGACTGGATCGCATTGTCAGCGCCGCAGAAAGTCTGC  >  NC_000913/2977129‑2977307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`