BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,099,727	T→C	intergenic (‑85/+98)	yggN ← / ← b2959	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,099,727	0	T	C	100.0%	777.8 / NA	245	intergenic (‑85/+98)	yggN/b2959	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (139/106); total (139/106)

Only 100 of 263 total aligned reads displayed.

ATCATAGTCTTCCCTCAAG‑AAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGT  >  NC_000913/3099638‑3099816

atcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaa                                                                                         >  2:4637156/1‑93 (MQ=255)

atcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaa                                                                                         >  1:277945/1‑93 (MQ=255)

 tcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaaa                                                                                        <  1:3482395/93‑1 (MQ=255)

 tcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaaa                                                                                        >  2:4404127/1‑93 (MQ=255)

 tcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaaa                                                                                        <  2:4351984/93‑1 (MQ=255)

 tcatAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCaaa                                                                                        >  1:4340152/1‑93 (MQ=255)

    tAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCGCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAacac                                                                                     <  2:3124975/93‑1 (MQ=38)

    tAGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAacac                                                                                     <  1:2136168/93‑1 (MQ=38)

     aGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACAcc                                                                                    >  1:3722593/1‑93 (MQ=255)

     aGTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACAcc                                                                                    <  2:4162023/93‑1 (MQ=38)

      gTCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCt                                                                                   <  2:3387202/93‑1 (MQ=38)

       tCTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCtt                                                                                  >  1:3943651/1‑93 (MQ=255)

        cTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTa                                                                                 <  2:267956/93‑1 (MQ=255)

        cTTCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTa                                                                                 <  1:148742/93‑1 (MQ=38)

         ttCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAt                                                                                >  1:2698567/1‑93 (MQ=255)

         ttCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAt                                                                                <  2:2458772/93‑1 (MQ=38)

         ttCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTAt                                                                                >  2:3109665/1‑93 (MQ=255)

          tCCCTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATc                                                                               <  2:2895706/93‑1 (MQ=255)

           cccTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATcc                                                                              <  1:2191148/93‑1 (MQ=38)

            ccTCAAGAAAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATccc                                                                             >  2:3414871/1‑93 (MQ=255)

                 agaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCGTa                                                                        >  1:279068/4‑93 (MQ=255)

                 agaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTa                                                                        >  2:1757629/4‑93 (MQ=255)

                  gaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTAc                                                                       >  1:1109124/3‑93 (MQ=255)

                  gaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTAc                                                                       >  2:3248317/3‑93 (MQ=255)

                  gaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTAc                                                                       >  2:2366836/3‑93 (MQ=255)

                  gaaaaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTAc                                                                       >  2:184625/3‑93 (MQ=255)

                     aaaaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCg                                                                    >  2:1966308/1‑93 (MQ=255)

                       aaTCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGAt                                                                  <  2:740487/93‑1 (MQ=255)

                          cAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGt                                                               <  1:4543642/93‑1 (MQ=255)

                          cAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGt                                                               >  1:2025434/1‑93 (MQ=255)

                            ggCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGc                                                             <  2:395423/93‑1 (MQ=255)

                            ggCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGc                                                             <  1:3653832/93‑1 (MQ=255)

                               cAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATc                                                          <  1:2395199/93‑1 (MQ=255)

                                aGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCt                                                         >  1:3290603/1‑93 (MQ=255)

                                aGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCt                                                         >  2:3309938/1‑93 (MQ=255)

                                 gCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCtt                                                        >  2:1384233/1‑93 (MQ=255)

                                 gCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCtt                                                        <  1:3519955/93‑1 (MQ=255)

                                 gCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCtt                                                        <  2:3293679/93‑1 (MQ=255)

                                    tttGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     >  1:4211801/1‑93 (MQ=255)

                                    tttGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     >  1:34458/1‑93 (MQ=255)

                                    tttGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     >  1:615778/1‑93 (MQ=255)

                                    tttGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     >  1:2844841/1‑93 (MQ=255)

                                    tttGCTGGCCCAACATTGATAACAAAGTACGCGTTCTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTcc                                                     <  2:2388483/93‑1 (MQ=37)

                                       gCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAgg                                                  >  2:2414656/1‑93 (MQ=255)

                                          ggacccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCt                                               <  2:3903791/90‑1 (MQ=255)

                                          ggCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCt                                               <  1:3563378/93‑1 (MQ=255)

                                           gCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTg                                              >  2:3717831/1‑93 (MQ=255)

                                            ccccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGa                                             <  1:2888384/93‑1 (MQ=255)

                                            ccccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGa                                             <  1:2520886/93‑1 (MQ=255)

                                             cccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGAt                                            >  2:1500795/1‑93 (MQ=255)

                                              ccAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATa                                           >  2:902285/1‑93 (MQ=255)

                                               cAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATaa                                          <  1:1052172/93‑1 (MQ=255)

                                               cAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATaa                                          >  1:2870210/1‑93 (MQ=255)

                                                 gATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGc                                        <  2:3442400/93‑1 (MQ=255)

                                                 gATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGc                                        >  2:1685817/1‑93 (MQ=255)

                                                 gATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGc                                        >  2:257344/1‑93 (MQ=255)

                                                    tGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTa                                     >  2:459265/1‑93 (MQ=255)

                                                    tGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTa                                     <  1:4636545/93‑1 (MQ=255)

                                                     gATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAg                                    >  1:689322/1‑93 (MQ=255)

                                                     gATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAg                                    >  2:2948720/1‑93 (MQ=255)

                                                     gATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAg                                    >  1:2447780/1‑93 (MQ=255)

                                                     gATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAg                                    <  2:1068988/93‑1 (MQ=255)

                                                      aTAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAgc                                   <  2:2247134/93‑1 (MQ=255)

                                                       tAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAgcg                                  >  1:2097774/1‑93 (MQ=255)

                                                       tAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAgcg                                  >  2:535040/1‑93 (MQ=255)

                                                         aCAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCa                                >  1:2352687/1‑93 (MQ=255)

                                                         aCAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCa                                <  2:4123481/93‑1 (MQ=255)

                                                          cAAAGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCAt                               >  2:4041913/1‑93 (MQ=255)

                                                           aaaGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATc                              <  2:2707009/93‑1 (MQ=255)

                                                           aaaGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATc                              >  2:3366073/1‑93 (MQ=255)

                                                            aaGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCa                             <  1:872630/93‑1 (MQ=255)

                                                             aGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAg                            >  1:4264372/1‑93 (MQ=255)

                                                             aGTACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAg                            <  2:1505734/93‑1 (MQ=255)

                                                               tACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGc                          <  2:1132699/93‑1 (MQ=255)

                                                               tACGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGc                          <  1:3695312/93‑1 (MQ=255)

                                                                aCGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCa                         <  1:595633/93‑1 (MQ=255)

                                                                aCGCGTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCa                         >  2:3845614/1‑93 (MQ=255)

                                                                  gcgTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGt                       >  1:1333655/1‑93 (MQ=255)

                                                                  gcgTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGt                       <  2:1438398/93‑1 (MQ=255)

                                                                  gcgTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGAAGCGCATCAGGAAGt                       >  1:3898613/1‑93 (MQ=255)

                                                                    gTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                     <  1:1751094/93‑1 (MQ=255)

                                                                    gTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                     <  2:3531285/93‑1 (MQ=255)

                                                                    gTTTTCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                     <  1:1277686/93‑1 (MQ=255)

                                                                     ttttCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGtttt                    >  2:15857/1‑93 (MQ=255)

                                                                      tttCCATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTg                   >  2:3101193/1‑93 (MQ=255)

                                                                        tCCATGCCGGATGCGTCGCAAACCCCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCa                 <  1:2704849/93‑1 (MQ=255)

                                                                         ccATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAt                >  2:636522/1‑93 (MQ=255)

                                                                         ccATGCCGGATGCGCCGCAACCACCTTATCCCGCCTACTCGATCGGGCAGCTTTCCAGGCGTGATAAGCGTAGCGCATCAGGCAGTTTTGCAt                <  1:168522/93‑1 (MQ=37)

                                                                          cATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAtt               >  2:3019443/1‑93 (MQ=255)

                                                                          cATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAtt               >  1:4061459/1‑93 (MQ=255)

                                                                          cATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAtt               <  2:478642/93‑1 (MQ=255)

                                                                          cATGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGAATCTTTCCAGGCCTGATAAGCGTTGAGCATCAGGCAGTTTTGCAtt               >  2:1260575/1‑93 (MQ=38)

                                                                           aggCCGGATGCGGCCAAAACACCTTACCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAttt              <  1:82078/91‑1 (MQ=37)

                                                                           aTGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAttt              >  1:3326686/1‑93 (MQ=255)

                                                                           aTGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCAttt              >  1:340782/1‑93 (MQ=255)

                                                                            tGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTg             >  1:944114/1‑93 (MQ=255)

                                                                            tGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTg             >  2:3771897/1‑93 (MQ=255)

                                                                            tGCCGGATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTg             <  1:3125646/93‑1 (MQ=255)

                                                                                 gATGCGGCGCAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATc        <  1:4538870/93‑1 (MQ=255)

                                                                                       gcgcAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGt  >  1:1822603/1‑93 (MQ=255)

ATCATAGTCTTCCCTCAAG‑AAAAATCAGGCCAGCATTTGCTGGCCCCAGATTGATAACAAAGTACGCGTTTTCCATGCCGGATGCGGCGTAAACACCTTATCCCGCCTACTCGATCGTGCATCTTTCCAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCATTTGTCATCGCCCGT  >  NC_000913/3099638‑3099816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`