Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,188,237 T→C V114A (GTG→GCG)  b3047 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,188,2370TC99.6% 824.9 / ‑5.1 263V114A (GTG→GCG) b3047putative membrane protein
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (139/123);  total (140/123)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.02e-01

Only 100 of 276 total aligned reads displayed.

ATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCA  >  NC_000913/3188147‑3188326
                                                                                          |                                                                                         
aTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACgcgc                                                                                         <  1:3883746/93‑1 (MQ=255)
aTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACgcgc                                                                                         >  2:4359748/1‑93 (MQ=255)
aTCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACgcgc                                                                                         >  1:1927040/1‑93 (MQ=255)
 tCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAAcgcgcg                                                                                        >  1:2960877/1‑93 (MQ=255)
  cccAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCga                                                                                       <  2:4131286/93‑1 (MQ=255)
   ccAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCgag                                                                                      >  1:3329299/1‑93 (MQ=255)
     aGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaa                                                                                    >  2:318532/1‑93 (MQ=255)
      gTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGaaa                                                                                   <  1:3411096/93‑1 (MQ=255)
        gAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATa                                                                                 <  2:4662932/93‑1 (MQ=255)
        gAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATa                                                                                 <  1:3777704/93‑1 (MQ=255)
        gAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATa                                                                                 >  1:9273/1‑93 (MQ=255)
         aGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAc                                                                                <  1:3704445/93‑1 (MQ=255)
         aGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAc                                                                                <  2:2430474/93‑1 (MQ=255)
         aGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAc                                                                                <  2:3128025/93‑1 (MQ=255)
          gCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAATCGCTCTTCTATTTTAACGCGCGAGAAATAcc                                                                               <  2:2045774/93‑1 (MQ=255)
          gCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAcc                                                                               >  1:1665644/1‑93 (MQ=255)
          gCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATAcc                                                                               <  2:3380474/93‑1 (MQ=255)
            aaaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGc                                                                             >  2:3093291/1‑93 (MQ=255)
             aaTTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGcc                                                                            >  2:2222523/1‑93 (MQ=255)
               ttCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCa                                                                          >  2:2574363/1‑93 (MQ=255)
               ttCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCa                                                                          >  2:1279466/1‑93 (MQ=255)
               atCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAAAAACCCTCTTCTATTTTAACGCGCGAGAAATTCCGCCCa                                                                          <  2:894045/92‑1 (MQ=255)
                 cAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaaa                                                                        >  1:1800899/1‑93 (MQ=255)
                 cAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaaa                                                                        >  1:4203675/1‑93 (MQ=255)
                  aaaTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaaaa                                                                       <  2:3308169/93‑1 (MQ=255)
                  aaaTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaaaa                                                                       >  2:1677352/1‑93 (MQ=255)
                  aaaTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaaaa                                                                       >  1:4451811/1‑93 (MQ=255)
                  aaaTAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCaaaa                                                                       <  1:1707727/93‑1 (MQ=255)
                    aTAAGAATGATAACTCAGGAAAAAATGCTCAAATTCCTAAAGACAGAGAAAAGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACaa                                                                    >  1:534786/1‑92 (MQ=255)
                     tAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAg                                                                    <  1:3738262/93‑1 (MQ=255)
                     tAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAg                                                                    >  2:475140/1‑93 (MQ=255)
                       aGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAt                                                                  <  1:836167/93‑1 (MQ=255)
                       aGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAt                                                                  <  2:2136517/93‑1 (MQ=255)
                       aGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAt                                                                  >  2:3754377/1‑93 (MQ=255)
                       aGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGAt                                                                  <  2:3584113/93‑1 (MQ=255)
                        gAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATa                                                                 <  1:4593852/93‑1 (MQ=255)
                         aaTGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaa                                                                >  1:2570690/1‑93 (MQ=255)
                           tGATAACTCAGGAAAAAAGTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaa                                                              <  1:1284169/93‑1 (MQ=255)
                            gATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaa                                                             <  1:4164068/93‑1 (MQ=255)
                              tAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaaaa                                                           >  1:2420989/1‑93 (MQ=255)
                              tAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATaaaaaaa                                                           >  2:620206/1‑93 (MQ=255)
                                aCTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAt                                                         <  2:1485924/93‑1 (MQ=255)
                                 cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtg                                                        >  1:1502012/1‑93 (MQ=255)
                                 cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtg                                                        <  2:717035/93‑1 (MQ=255)
                                 cTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtg                                                        <  2:3423712/93‑1 (MQ=255)
                                  tCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtgt                                                       >  2:134784/1‑93 (MQ=255)
                                  tCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAAtgt                                                       >  1:1301633/1‑93 (MQ=255)
                                     ggAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGAt                                                    <  1:2143606/93‑1 (MQ=255)
                                       aaaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATga                                                  >  2:4018646/1‑92 (MQ=255)
                                       aaaaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGc                                                  <  1:3196963/93‑1 (MQ=255)
                                         aaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCaa                                                <  2:3676706/93‑1 (MQ=255)
                                         aaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCaa                                                <  1:1197030/93‑1 (MQ=255)
                                         aaaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCaa                                                <  2:1897375/93‑1 (MQ=255)
                                          aaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAg                                               <  1:3617789/93‑1 (MQ=255)
                                          aaaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAg                                               <  1:454143/93‑1 (MQ=255)
                                           aaTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGt                                              >  2:514153/1‑93 (MQ=255)
                                            aTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTc                                             >  1:111078/1‑93 (MQ=255)
                                            aTTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTc                                             >  2:1509930/1‑93 (MQ=255)
                                             ttGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCa                                            >  2:1629801/1‑93 (MQ=255)
                                               gCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACt                                          >  2:3405537/1‑93 (MQ=255)
                                                cTCACCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAGCGCGCGAGAAATACCGCCCAAAACAGAAAAAAAAAATGTGGTGCAAGGCACTa                                         <  2:3554537/93‑1 (MQ=255)
                                                cTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTa                                         >  2:2252521/1‑93 (MQ=255)
                                                cTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTa                                         <  1:4658042/93‑1 (MQ=255)
                                                 tCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAGAACAGATAAAAAAAATGTGATGCAAGTCACTAt                                        <  2:3487990/93‑1 (MQ=255)
                                                 tCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTAt                                        <  1:4287687/93‑1 (MQ=255)
                                                   aaCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgc                                      <  2:2214709/93‑1 (MQ=255)
                                                   aaCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgc                                      <  2:1765610/93‑1 (MQ=255)
                                                   aaCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgc                                      >  1:1080250/1‑93 (MQ=255)
                                                    aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgca                                     >  2:1104011/1‑93 (MQ=255)
                                                    aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgca                                     >  1:625159/1‑93 (MQ=255)
                                                    aCTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgca                                     <  1:275738/93‑1 (MQ=255)
                                                       tCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATgcagca                                  <  1:2857302/93‑1 (MQ=255)
                                                         cTAAAGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACg                                >  2:2764089/1‑93 (MQ=255)
                                                           aaaGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCa                              <  2:1369433/93‑1 (MQ=255)
                                                           aaaGACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCa                              >  2:298524/1‑93 (MQ=255)
                                                              gACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTg                           <  2:4539752/93‑1 (MQ=255)
                                                              gACAGAGAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTg                           <  2:2516307/93‑1 (MQ=255)
                                                                 agagAAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGaaa                        <  2:3694891/93‑1 (MQ=255)
                                                                  gagaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAc                       <  2:1937583/93‑1 (MQ=255)
                                                                  gagaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAAc                       <  1:2344682/93‑1 (MQ=255)
                                                                   agaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACt                      <  1:2050976/93‑1 (MQ=255)
                                                                    gaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTa                     <  1:75505/93‑1 (MQ=255)
                                                                    gaAACGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTa                     <  2:4438154/93‑1 (MQ=255)
                                                                       aCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTc                  >  1:3011584/1‑93 (MQ=255)
                                                                       aCGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTc                  >  1:3543179/1‑93 (MQ=255)
                                                                        cGCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCt                 >  1:550510/1‑93 (MQ=255)
                                                                         gCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTg                <  2:3981006/93‑1 (MQ=255)
                                                                         gCTCTTCTATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTg                <  1:4478367/93‑1 (MQ=255)
                                                                           tcttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggc              >  1:2651252/1‑93 (MQ=255)
                                                                           tcttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggc              >  1:4046589/1‑93 (MQ=255)
                                                                            cttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcg             >  2:3888080/1‑93 (MQ=255)
                                                                             ttctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcgg            >  1:3056247/1‑93 (MQ=255)
                                                                              tctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTggcggc           >  2:444887/1‑93 (MQ=255)
                                                                               ctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGcc          <  2:4232751/93‑1 (MQ=255)
                                                                               ctATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGcc          <  2:1567571/93‑1 (MQ=255)
                                                                                tATTTTAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCa         >  1:2200660/1‑93 (MQ=255)
                                                                                  ttttAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaa       >  2:606493/1‑93 (MQ=255)
                                                                                   tttAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCaaaa      <  1:684428/93‑1 (MQ=255)
                                                                                     tAACGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGc    <  1:1224510/93‑1 (MQ=255)
                                                                                      aaCGCGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGcc   >  2:695020/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATCCCAGTGAGCAAATTCAAATAAGAATGATAACTCAGGAAAAAATTGCTCAACTTCCTAAAGACAGAGAAACGCTCTTCTATTTTAACGTGCGAGAAATACCGCCCAAAACAGATAAAAAAAATGTGATGCAAGTCACTATGCAGCACGCATTGAAACTATTCTGGCGGCCAAAAGCCA  >  NC_000913/3188147‑3188326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: