Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,237,258 A→G intergenic (+71/‑326) ygjT → / → ygjU putative transport protein/putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,237,2580AG100.0% 479.4 / NA 161intergenic (+71/‑326)ygjT/ygjUputative transport protein/putative transport protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (86/75);  total (86/75)

Only 100 of 170 total aligned reads displayed.

AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑CCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGAC  >  NC_000913/3237170‑3237345
                                                                                          |                                                                                         
aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAgggg                                                                                         <  2:1337911/93‑1 (MQ=255)
 agcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGgggg                                                                                        <  2:3671634/93‑1 (MQ=255)
 agcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGgggg                                                                                        >  2:2525238/1‑93 (MQ=255)
  gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGt                                                                                       >  2:4169946/1‑93 (MQ=255)
  gcagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGt                                                                                       <  2:2339310/93‑1 (MQ=255)
     gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCgg                                                                                    >  1:3428434/1‑93 (MQ=255)
      cGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCggg                                                                                   >  1:1996204/1‑93 (MQ=255)
        gggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGt                                                                                 <  1:762792/93‑1 (MQ=255)
          gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGa                                                                               >  2:4366574/1‑93 (MQ=255)
          gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGa                                                                               <  1:4105053/93‑1 (MQ=255)
          gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGa                                                                               >  1:3013331/1‑93 (MQ=255)
           tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAg                                                                              <  2:971537/93‑1 (MQ=255)
             gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAggg                                                                            <  1:1073197/93‑1 (MQ=255)
             gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAggg                                                                            >  1:3709509/1‑93 (MQ=255)
               tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAgggga                                                                          >  2:2827224/1‑91 (MQ=255)
               tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTa                                                                          >  1:677150/1‑93 (MQ=38)
               tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTa                                                                          >  1:3600691/1‑93 (MQ=38)
               tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTa                                                                          >  1:2069932/1‑93 (MQ=38)
               tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGGGAGGGTa                                                                          >  1:3293078/1‑93 (MQ=255)
                 aTTTTTAATCTGCCTAAGCCGTGTACTCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAAt                                                                        <  2:3795048/93‑1 (MQ=255)
                    tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAAtttt                                                                     >  2:2458259/1‑93 (MQ=38)
                    tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAAtttt                                                                     <  1:4191695/93‑1 (MQ=255)
                     ttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAAttttt                                                                    >  1:252103/1‑93 (MQ=38)
                      tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTc                                                                   <  1:2325028/93‑1 (MQ=38)
                      tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTc                                                                   >  2:3368869/1‑93 (MQ=38)
                        aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGc                                                                 >  2:477637/1‑93 (MQ=38)
                        aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGc                                                                 >  1:1484855/1‑93 (MQ=38)
                         tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCa                                                                <  2:342694/93‑1 (MQ=37)
                          cTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCAc                                                               <  1:2845765/93‑1 (MQ=38)
                           tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCAcc                                                              >  2:1776741/1‑93 (MQ=38)
                           tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCAcc                                                              >  1:4313680/1‑93 (MQ=38)
                           tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCAcc                                                              >  1:2601423/1‑93 (MQ=38)
                            gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCg                                                             >  2:4002680/1‑93 (MQ=38)
                            gCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCg                                                             <  1:4149294/93‑1 (MQ=38)
                              cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt                                                           <  2:561710/93‑1 (MQ=38)
                              cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt                                                           <  1:3982663/93‑1 (MQ=255)
                              cTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt                                                           >  2:2897040/1‑93 (MQ=38)
                               tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg                                                          >  1:3151706/1‑93 (MQ=38)
                               tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg                                                          >  1:764676/1‑93 (MQ=38)
                               tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg                                                          >  1:2591041/1‑93 (MQ=38)
                                  gCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTg                                                       <  2:2922445/93‑1 (MQ=38)
                                      tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt                                                   >  1:3846761/1‑93 (MQ=37)
                                      tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt                                                   >  2:2621600/1‑93 (MQ=37)
                                      tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt                                                   <  1:272059/93‑1 (MQ=38)
                                       gtACCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTg                                                  <  1:2499581/93‑1 (MQ=38)
                                         aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt                                               >  1:1614813/1‑93 (MQ=37)
                                         aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt                                               >  1:3205416/1‑93 (MQ=37)
                                         aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt                                               <  2:3339304/93‑1 (MQ=38)
                                         aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt                                               >  1:4461096/1‑93 (MQ=37)
                                         aCCCTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑tt                                               >  1:3348101/1‑93 (MQ=37)
                                          cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc                                              >  1:2650788/1‑93 (MQ=37)
                                          cccTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTc                                              <  2:2808721/93‑1 (MQ=38)
                                            cTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTtcc                                            >  2:3206782/1‑93 (MQ=25)
                                            cTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTccc                                            >  2:1095170/1‑93 (MQ=37)
                                            cTGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTccc                                            >  1:212099/1‑93 (MQ=37)
                                            cTGTCATTAACATGAGCACCGTGTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTccc                                            <  1:1692416/93‑1 (MQ=37)
                                             tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccc                                           <  2:3524666/93‑1 (MQ=37)
                                             tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccc                                           >  2:3085465/1‑93 (MQ=37)
                                             tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccc                                           >  2:3359920/1‑93 (MQ=37)
                                             tGTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑CTaccc                                           >  1:852507/1‑93 (MQ=25)
                                              gTCATTAACATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCt                                          >  1:4522276/1‑93 (MQ=37)
                                                    aaCATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTTCCCCCAcccc                                    >  1:154818/1‑92 (MQ=25)
                                                     aCATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTa                                   >  1:4338666/1‑93 (MQ=21)
                                                     aCATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTa                                   <  1:4276925/93‑1 (MQ=21)
                                                      cATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTcccccccccccca                                  >  1:973283/1‑90 (MQ=25)
                                                      cATGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTaa                                  <  1:3042541/93‑1 (MQ=21)
                                                       aTGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑c                                <  2:3531456/93‑1 (MQ=21)
                                                        tGAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑cc                               >  1:525168/1‑93 (MQ=21)
                                                         gAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑ccc                              >  1:3838206/1‑93 (MQ=21)
                                                         gAGCACCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑ccc                              >  2:1538983/1‑93 (MQ=21)
                                                           gCACCGTTTTCTCCCTCTCCCTGCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCctc                            <  2:3958926/93‑1 (MQ=18)
                                                             aCCGTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCtctc                          <  1:920949/93‑1 (MQ=18)
                                                                gTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTcccc                       >  1:2278787/1‑93 (MQ=18)
                                                                gTTTTCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTcccc                       >  2:2387873/1‑93 (MQ=18)
                                                                 ttttCTCCCTCTCCCTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCa                      <  2:1641273/93‑1 (MQ=17)
                                                                    tctccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAAc                   <  2:4530669/89‑1 (MQ=18)
                                                                     ctccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACg                  <  1:3666625/90‑1 (MQ=18)
                                                                      tccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTCA‑CCCTCTCCCCCAAcag                 >  2:1201163/3‑91 (MQ=18)
                                                                       ccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTTCCCCCCCCCCCAACCCCTCCCCCCACACg                  >  2:3614831/2‑93 (MQ=16)
                                                                       ccctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACggg                <  1:1724813/92‑1 (MQ=18)
                                                                        cctctcccTTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACgggg               <  1:2767414/93‑1 (MQ=255)
                                                                          tctccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCg             >  2:4458378/5‑93 (MQ=255)
                                                                          tctccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCg             <  2:3686013/89‑1 (MQ=255)
                                                                           ctccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGa            <  1:1910430/90‑1 (MQ=255)
                                                                            tccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAg           <  1:1323012/91‑1 (MQ=255)
                                                                             ccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCCCCCTAA‑CCCTCTCCCCAAACGGGGCGAgg          <  1:3216741/92‑1 (MQ=255)
                                                                             ccctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAgg          <  2:1805604/92‑1 (MQ=255)
                                                                              cctTCCAGGGAGGGGGTCGGGGTGAGGTTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAggg         <  2:41067/93‑1 (MQ=255)
                                                                              cctGCCAGGGAGGGGGTCGGGGTGAGGGGAATTTTTCGCACCGATGCTGGCCTG‑TGCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAggg         <  2:1658176/93‑1 (MQ=21)
                                                                               ctTCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCCTA‑CCCTCTCCCCCAACTGGGGTAgggg        >  2:2093029/1‑93 (MQ=18)
                                                                                 tCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGTGGCGAGGGGAc      <  2:2947597/93‑1 (MQ=255)
                                                                                 tCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGAc      <  2:2024126/93‑1 (MQ=255)
                                                                                 tCCAGGGAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGAc      <  1:3039439/93‑1 (MQ=255)
                                                                                 tCCAGGGAGGGGGTCGGGGGGAGGGTAATTTTACGCGCCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGAc      <  1:3349895/93‑1 (MQ=18)
                                                                                 tCCAGGGAGGGGGCCGGGGTGAGGGTAATTTCTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAC‑CCCTCTCCCCAAACGGGGCGAGGGGAc      <  1:4085173/93‑1 (MQ=18)
                                                                                    agggagggGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGa   <  1:3321814/93‑1 (MQ=255)
                                                                                     gggAGGGGGTCGGGGTGAGGGTAATTTTTCGCTCCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGAc  <  2:698113/93‑1 (MQ=255)
                                                                                     gggAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTTCCCTCACCCTAA‑ACCCCTCCCCCAACGGGGCGGGGGGGCTGAc  >  2:3004153/1‑93 (MQ=255)
                                                                                     gggAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTTCCCCCCCCCCCA‑CCCCCTCCCCCAACCCGGCGAGGGGGGTGAc  >  1:1079884/1‑93 (MQ=255)
                                                                                     gggAGGGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGAc  <  2:1421496/93‑1 (MQ=255)
                                                                                          |                                                                                         
AAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CCTCT‑CCTTCCAGGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTG‑TTCCCCTCACCCTAA‑CCCTCTCCCCAAACGGGGCGAGGGGACTGAC  >  NC_000913/3237170‑3237345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑