BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,439,191	T→C	H41R (CAC→CGC)	rpsD ←	30S ribosomal subunit protein S4

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,439,191	0	T	C	100.0%	726.4 / NA	230	H41R (CAC→CGC)	rpsD	30S ribosomal subunit protein S4
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (110/120); total (110/120)

Only 100 of 240 total aligned reads displayed.

TGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTC  >  NC_000913/3439101‑3439280

tGACGCTCCAGCACACCATATATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCgcgc                                                                                         <  2:4217574/93‑1 (MQ=255)

tGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCgcgc                                                                                         >  1:3912060/1‑93 (MQ=255)

 gACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCt                                                                                        <  2:1907657/93‑1 (MQ=255)

    gCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGc                                                                                     >  1:1767836/1‑93 (MQ=255)

      tCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCa                                                                                   <  2:453591/93‑1 (MQ=255)

      tCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCa                                                                                   <  1:3073342/93‑1 (MQ=255)

       ccAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAg                                                                                  >  2:4510656/1‑93 (MQ=255)

        cAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAgg                                                                                 <  2:1388779/93‑1 (MQ=255)

        cAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAgg                                                                                 <  1:3925107/93‑1 (MQ=255)

         aGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGa                                                                                <  2:681551/93‑1 (MQ=255)

         aGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGa                                                                                >  1:3433377/1‑93 (MQ=255)

          gCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAg                                                                               <  1:4225364/93‑1 (MQ=255)

          gCACACCATAGATACGGCGAACTTTTTGCTTGTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAg                                                                               <  1:3249286/93‑1 (MQ=255)

          gCACACCACAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAg                                                                               <  2:2872867/93‑1 (MQ=255)

           cacaCCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGc                                                                              <  2:4077909/93‑1 (MQ=255)

            acacCATAGATACGGCGAAATTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCt                                                                             >  2:815070/1‑93 (MQ=255)

             cacCATAGATACGGCGAGCTTTTTGCTTTTCACGCAACGGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCtt                                                                            <  1:387184/93‑1 (MQ=255)

             cacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCtt                                                                            <  2:2134328/93‑1 (MQ=255)

             cacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCtt                                                                            <  1:3749770/93‑1 (MQ=255)

              acCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTg                                                                           >  2:3946988/1‑93 (MQ=255)

              acCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTg                                                                           >  2:2560367/1‑93 (MQ=255)

                cATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGtt                                                                         >  1:4227265/1‑93 (MQ=255)

                 aTAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTc                                                                        <  1:2798671/93‑1 (MQ=255)

                  tAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCa                                                                       >  1:4150227/1‑93 (MQ=255)

                  tAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCa                                                                       >  2:4110736/1‑93 (MQ=255)

                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     >  1:4414585/1‑93 (MQ=255)

                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     >  1:3779602/1‑93 (MQ=255)

                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     <  1:3591188/93‑1 (MQ=255)

                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     >  2:1534732/1‑93 (MQ=255)

                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     <  1:760081/93‑1 (MQ=255)

                      tACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAttt                                                                   <  2:2336821/93‑1 (MQ=255)

                         ggCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTac                                                                <  1:1136155/93‑1 (MQ=255)

                         ggCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTac                                                                >  2:1240784/1‑93 (MQ=255)

                          gCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTaca                                                               <  2:1619364/93‑1 (MQ=255)

                            gAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACt                                                             >  2:2497099/1‑93 (MQ=255)

                            gAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACt                                                             >  1:609337/1‑93 (MQ=255)

                             aaCTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACtt                                                            <  2:2793125/93‑1 (MQ=255)

                               cTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTgg                                                          <  1:2004826/93‑1 (MQ=255)

                               cTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTgg                                                          <  2:3079622/93‑1 (MQ=255)

                                tttttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGt                                                         <  1:1917435/93‑1 (MQ=255)

                                 ttttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTa                                                        <  2:3462278/93‑1 (MQ=255)

                                  tttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTat                                                       >  1:1467944/1‑93 (MQ=255)

                                    tGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGGTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcg                                                     >  2:2050860/1‑93 (MQ=255)

                                     tcTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcga                                                    <  1:1295728/92‑1 (MQ=255)

                                     gCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcga                                                    <  2:3109361/93‑1 (MQ=255)

                                      cTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgat                                                   <  1:687850/93‑1 (MQ=255)

                                       ttttCACACAACTGCACACCATAGTGAGACAGACGCGCTTTACGCGCAGCGCGCGGGCCAGGAGCTTTTTCAATTGTCCGCGTGGTatggatc                                                  <  2:3401498/93‑1 (MQ=255)

                                        tttCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgatcg                                                 <  1:2112431/93‑1 (MQ=255)

                                        tttCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgatcg                                                 <  2:1695389/93‑1 (MQ=255)

                                        tttCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgatcg                                                 <  2:381166/93‑1 (MQ=255)

                                         ttCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATcgc                                                >  2:1150113/1‑93 (MQ=255)

                                            aCGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATcgcgcg                                             >  1:4584329/1‑93 (MQ=255)

                                            aCGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATcgcgcg                                             >  2:4274628/1‑93 (MQ=255)

                                              gCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGaa                                           <  2:3862262/93‑1 (MQ=255)

                                              gCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGaa                                           <  2:3513782/93‑1 (MQ=255)

                                               cAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAAc                                          <  1:2292393/93‑1 (MQ=255)

                                                aaCTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACg                                         >  2:1922230/1‑93 (MQ=255)

                                                 aCTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGc                                        >  1:815303/1‑93 (MQ=255)

                                                  cTGCACACCATAGTCAGACAGACGCGGTTTACGCTCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGcc                                       <  1:2328978/93‑1 (MQ=255)

                                                  cTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGcc                                       <  1:4411059/93‑1 (MQ=255)

                                                  cTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGcc                                       >  1:3952397/1‑93 (MQ=255)

                                                   tGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCa                                      <  1:1105275/93‑1 (MQ=255)

                                                   tGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCa                                      <  1:2427352/93‑1 (MQ=255)

                                                      acgccATAGTCGGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACCCTTGGTATCGATCGCGCGAACGCCAGAc                                   <  2:629363/90‑1 (MQ=255)

                                                       cacCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACt                                  >  1:141491/1‑93 (MQ=255)

                                                       cacCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACt                                  >  1:224911/1‑93 (MQ=255)

                                                       cacCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACt                                  <  1:3050408/93‑1 (MQ=255)

                                                         ccATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTa                                >  2:925683/1‑93 (MQ=255)

                                                         ccATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTa                                <  1:2099921/93‑1 (MQ=255)

                                                          cATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTaa                               <  2:4438035/93‑1 (MQ=255)

                                                           aTAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCCAACGCCAGACTTAAg                              >  1:2639721/1‑93 (MQ=255)

                                                           aTAGTCAGACAGACGCGGGTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAg                              <  1:3844041/93‑1 (MQ=255)

                                                            tAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAgg                             >  2:2987112/1‑93 (MQ=255)

                                                              gTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGGCCCAACGCCAGACTTAAGGaa                           >  2:1498178/1‑93 (MQ=255)

                                                              gTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGaa                           <  1:12235/93‑1 (MQ=255)

                                                               tCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAAt                          >  1:3166587/1‑93 (MQ=255)

                                                                cagacagaCGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATa                         >  2:3654809/1‑93 (MQ=255)

                                                                cagacagaCGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATa                         >  1:527074/1‑93 (MQ=255)

                                                                  gacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAg                       >  2:2597590/1‑93 (MQ=255)

                                                                  gacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAg                       <  2:2171173/93‑1 (MQ=255)

                                                                  gacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAg                       <  1:936792/93‑1 (MQ=255)

                                                                  gacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAg                       <  1:4492288/93‑1 (MQ=255)

                                                                   acagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGt                      <  1:2905244/93‑1 (MQ=255)

                                                                    cagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTc                     <  1:3764275/93‑1 (MQ=255)

                                                                    cagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTc                     <  1:2545176/93‑1 (MQ=255)

                                                                    cagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTc                     >  2:507334/1‑93 (MQ=255)

                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  2:3585408/1‑93 (MQ=255)

                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  1:1834205/1‑93 (MQ=255)

                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  2:1072851/1‑93 (MQ=255)

                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGATTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  1:101227/1‑93 (MQ=255)

                                                                       acGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGt                  >  1:4085275/1‑93 (MQ=255)

                                                                           ggTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGccc              <  2:1962157/93‑1 (MQ=255)

                                                                            gTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCt             >  2:1259781/1‑93 (MQ=255)

                                                                             tttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTc            <  2:2266671/93‑1 (MQ=255)

                                                                             tttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTc            >  1:1526814/1‑93 (MQ=255)

                                                                              ttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCa           <  1:4045233/93‑1 (MQ=255)

                                                                                 cgcgCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacga        <  1:1651570/93‑1 (MQ=255)

                                                                                  gcgcACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacgac       <  1:4553619/93‑1 (MQ=255)

                                                                                      aCCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCt   <  1:3544130/93‑1 (MQ=255)

                                                                                       ccGCGCTGGCGAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAACAAGTCGGTGCCCTCACGACGGCTc  <  2:202811/93‑1 (MQ=255)

TGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTC  >  NC_000913/3439101‑3439280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`