Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,509,089 T→C N5S (AAC→AGC) 
E225E (GAA→GAG
yhfY ←
yhfZ ←
hypothetical protein
hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,509,0890TC100.0% 719.9 / NA 228N5S (AAC→AGC) 
E225E (GAA→GAG
yhfY
yhfZ
hypothetical protein
hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (131/97);  total (131/97)

Only 100 of 235 total aligned reads displayed.

CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATC  >  NC_000913/3508999‑3509178
                                                                                          |                                                                                         
ccTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTc                                                                                         >  2:4069732/1‑93 (MQ=255)
ccTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTc                                                                                         >  2:223654/1‑93 (MQ=255)
 cTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTcc                                                                                        >  1:368483/1‑93 (MQ=255)
 cTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTcc                                                                                        <  2:4463243/93‑1 (MQ=255)
 cTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCAGCTcc                                                                                        >  1:4309928/1‑93 (MQ=255)
  tttGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCt                                                                                       >  2:2323739/1‑93 (MQ=255)
  tttGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCt                                                                                       >  2:1375948/1‑93 (MQ=255)
  tttGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCt                                                                                       <  1:188669/93‑1 (MQ=255)
  tttGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCt                                                                                       >  1:1250870/1‑93 (MQ=255)
    tGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGt                                                                                     <  1:1014210/93‑1 (MQ=255)
    tGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGt                                                                                     >  1:4199275/1‑93 (MQ=255)
        gATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTccc                                                                                 <  2:2381234/93‑1 (MQ=255)
        gATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGGTTAATAACTCGGCTCCTGTTccc                                                                                 >  1:1670101/1‑93 (MQ=255)
        gATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTACATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTccc                                                                                 >  1:1725309/1‑93 (MQ=255)
         aTGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTcccc                                                                                >  1:3742956/1‑93 (MQ=255)
         aTGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTcccc                                                                                >  1:4070626/1‑93 (MQ=255)
          tGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCca                                                                               >  2:2546752/1‑93 (MQ=255)
           gTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcac                                                                              >  1:3804612/1‑93 (MQ=255)
              cTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactca                                                                           >  1:2368179/1‑93 (MQ=255)
               ttATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCTGCTCCTGCTCCCcactcac                                                                          >  1:1202267/1‑93 (MQ=255)
               ttATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactcac                                                                          <  1:4615909/93‑1 (MQ=255)
               ttATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCcactcac                                                                          >  1:1372430/1‑93 (MQ=255)
                 aTCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTa                                                                        <  2:3632105/93‑1 (MQ=255)
                 aTCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTa                                                                        <  1:2726486/93‑1 (MQ=255)
                    aaTAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCGCCACTCACTAccc                                                                     >  2:2571924/1‑93 (MQ=255)
                    aaTAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTAccc                                                                     >  1:769986/1‑93 (MQ=255)
                      tAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgt                                                                   >  1:4354381/1‑93 (MQ=255)
                      tAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCACACTCACTACCCgt                                                                   >  2:515569/1‑93 (MQ=255)
                        aCGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgttg                                                                 <  1:3838086/93‑1 (MQ=255)
                         cGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgttgt                                                                >  1:4563175/1‑93 (MQ=255)
                          gcctgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCgttgtt                                                               >  1:4281666/1‑93 (MQ=255)
                            ctgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGa                                                             <  1:2290302/93‑1 (MQ=255)
                            ctgcctCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGa                                                             >  1:3925547/1‑93 (MQ=255)
                            ctgcctCGCAAAGCAGGTTGAGTCTGGTTTCAATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGa                                                             >  1:2004148/1‑93 (MQ=255)
                                 tCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGc                                                        >  1:1939406/1‑93 (MQ=255)
                                 tCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGc                                                        >  1:3638186/1‑93 (MQ=255)
                                  cGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCg                                                       <  1:4477913/93‑1 (MQ=255)
                                     aaaGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGc                                                    >  1:4121661/1‑93 (MQ=255)
                                     aaaGCAGGATGAGTCTGGTCTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGc                                                    >  2:4542431/1‑93 (MQ=255)
                                      aaGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCa                                                   >  1:3167414/1‑93 (MQ=255)
                                       aGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAg                                                  <  1:1437199/93‑1 (MQ=255)
                                       aGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAg                                                  <  1:160593/93‑1 (MQ=255)
                                       aGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAg                                                  >  2:1212599/1‑93 (MQ=255)
                                         cAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAggg                                                <  2:1734052/93‑1 (MQ=255)
                                          aGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGc                                               >  1:3056912/1‑93 (MQ=255)
                                               gAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGtt                                          <  1:2621360/93‑1 (MQ=255)
                                                aGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGttt                                         <  1:4248887/93‑1 (MQ=255)
                                                aGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGttt                                         >  1:976721/1‑93 (MQ=255)
                                                 gTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTa                                        <  2:1519399/93‑1 (MQ=255)
                                                 gTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTa                                        >  2:2499957/1‑93 (MQ=255)
                                                 gTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTa                                        <  2:3466011/93‑1 (MQ=255)
                                                 gTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTa                                        <  2:3756891/93‑1 (MQ=255)
                                                   ttGGGTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATc                                      <  1:1309948/92‑1 (MQ=255)
                                                   cTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATc                                      >  1:3317711/1‑93 (MQ=255)
                                                    tGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCt                                     <  2:314823/93‑1 (MQ=255)
                                                     ggTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTa                                    >  2:3433095/1‑93 (MQ=255)
                                                      gTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTAc                                   <  1:2124590/93‑1 (MQ=255)
                                                       tttCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACa                                  <  1:3620619/93‑1 (MQ=255)
                                                         tCCATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTTCAAc                                >  2:4369196/1‑93 (MQ=255)
                                                           cATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACgg                              <  1:2403997/93‑1 (MQ=255)
                                                           cATATCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACgg                              >  1:3020629/1‑93 (MQ=255)
                                                            atatCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGc                             <  2:130590/93‑1 (MQ=255)
                                                              atCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCAc                           <  2:2089475/93‑1 (MQ=255)
                                                               tCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACg                          >  2:66111/1‑93 (MQ=255)
                                                               tCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACg                          >  2:3392225/1‑93 (MQ=255)
                                                               tCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACg                          >  1:668178/1‑93 (MQ=255)
                                                               tCAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTAACACGGCACg                          >  1:903473/1‑93 (MQ=255)
                                                                cAGATGCTTTTCGTTTAATAACTCTGCTCCTGCTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgc                         >  2:4547338/1‑93 (MQ=255)
                                                                cAGATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgc                         <  2:2709498/93‑1 (MQ=255)
                                                                 aGATGCCGTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACcgcacgca                        >  2:3804671/1‑93 (MQ=255)
                                                                  gATGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgcag                       >  2:3028542/1‑93 (MQ=255)
                                                                    tGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgcagca                     <  1:143074/93‑1 (MQ=255)
                                                                    tGCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACgcagca                     >  1:25606/1‑93 (MQ=255)
                                                                     gCCTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGTCACgcattag                    >  2:2791110/1‑89 (MQ=255)
                                                                      ccTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgt                   <  1:3941974/93‑1 (MQ=255)
                                                                      ccTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgt                   >  1:3521523/1‑93 (MQ=255)
                                                                      ccTTTCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgt                   >  1:80409/1‑93 (MQ=255)
                                                                        tttCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACACGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAAAGGCACGCAGCAgttg                 >  1:1845796/1‑93 (MQ=255)
                                                                         ttCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgt                <  2:752194/93‑1 (MQ=255)
                                                                         ttCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgt                <  2:1172417/93‑1 (MQ=255)
                                                                          tCGTTTAATAACTCGGCTCCTGTTCCTCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgtt               <  1:294951/93‑1 (MQ=255)
                                                                          tCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgtt               <  1:1459289/93‑1 (MQ=255)
                                                                          tCGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAgttgtt               <  2:4677769/93‑1 (MQ=255)
                                                                           cGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGttgttg              >  2:109491/1‑93 (MQ=255)
                                                                           cGTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGttgttg              >  2:1968836/1‑93 (MQ=255)
                                                                            gTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGc             >  2:329373/1‑93 (MQ=255)
                                                                            gTTTAATAACTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGc             >  1:1829735/1‑93 (MQ=255)
                                                                               taataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCAtt          <  2:1995449/93‑1 (MQ=255)
                                                                                aataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTg         >  2:3539876/1‑93 (MQ=255)
                                                                                aataaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTg         >  2:1447938/1‑93 (MQ=255)
                                                                                  taaCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTggg       <  1:1528130/93‑1 (MQ=255)
                                                                                    aCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTa     >  2:3084116/1‑93 (MQ=255)
                                                                                    aCTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTa     >  1:3384377/1‑93 (MQ=255)
                                                                                     cTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTaa    <  2:178509/93‑1 (MQ=255)
                                                                                     cTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTaa    <  2:2630564/93‑1 (MQ=255)
                                                                                     cTCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTaa    >  1:3484135/1‑93 (MQ=255)
                                                                                      tCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAat   >  1:1072375/1‑93 (MQ=255)
                                                                                      tCGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAat   >  1:2201935/1‑93 (MQ=255)
                                                                                       cGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAatc  <  2:90989/93‑1 (MQ=255)
                                                                                       cGGCTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAatc  <  2:94125/93‑1 (MQ=255)
                                                                                          |                                                                                         
CCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCACTACCCGTTGTTGATGGGCGAGCAGGGCGTGTTTATCTACAACGGCACGCAGCAGTTGTTGCATTGGGTAATC  >  NC_000913/3508999‑3509178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: