Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,621,415 T→C intergenic (+2/‑594) yhhH → / → yhhI hypothetical protein/putative receptor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,621,4150TC99.5% 588.0 / ‑4.9 184intergenic (+2/‑594)yhhH/yhhIhypothetical protein/putative receptor
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (76/107);  total (76/108)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.41e-01

Only 100 of 184 total aligned reads displayed.

TTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTAT  >  NC_000913/3621325‑3621504
                                                                                          |                                                                                         
ttCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAt                                                                                         <  2:4076142/93‑1 (MQ=255)
ttCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCAt                                                                                         <  2:2753991/93‑1 (MQ=255)
   aCTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTa                                                                                      <  1:1519252/93‑1 (MQ=255)
     tCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAg                                                                                    >  1:3291472/1‑93 (MQ=255)
        gACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGAt                                                                                 <  2:4663913/93‑1 (MQ=255)
        gACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGAt                                                                                 >  1:1971040/1‑93 (MQ=255)
          ccAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATaa                                                                               <  2:4141182/93‑1 (MQ=255)
           cAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAAt                                                                              <  2:3587659/93‑1 (MQ=255)
            aaaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATc                                                                             <  1:4433072/93‑1 (MQ=255)
            aaaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATc                                                                             >  1:3141688/1‑93 (MQ=255)
             aaTTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCa                                                                            >  1:2929179/1‑93 (MQ=255)
               ttGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCaaa                                                                          <  1:1262088/93‑1 (MQ=255)
                tGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAAc                                                                         <  1:1901466/93‑1 (MQ=255)
                 gCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACa                                                                        <  2:2553014/93‑1 (MQ=255)
                 gCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACa                                                                        <  1:2478128/93‑1 (MQ=255)
                   tggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATc                                                                      >  2:850795/1‑93 (MQ=255)
                    ggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCg                                                                     >  1:3713260/1‑93 (MQ=255)
                      tggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCgtg                                                                   >  1:3258238/1‑93 (MQ=255)
                      tggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCgtg                                                                   >  2:3966416/1‑93 (MQ=255)
                       ggggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCgtgt                                                                  <  2:7981/93‑1 (MQ=255)
                       ggggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCgtgt                                                                  <  1:3562365/93‑1 (MQ=255)
                       ggggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCgtgt                                                                  >  1:3796916/1‑93 (MQ=255)
                          gTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTgcg                                                               >  1:17104/1‑93 (MQ=255)
                           tttttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTgcgc                                                              >  2:2178132/1‑93 (MQ=255)
                             tttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTg                                                            >  1:3958515/1‑93 (MQ=255)
                              ttattaTAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGa                                                           >  1:4676940/1‑93 (MQ=255)
                               tattatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGAt                                                          <  1:73780/93‑1 (MQ=255)
                                attatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATg                                                         <  2:2303590/93‑1 (MQ=255)
                                  tataGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGc                                                       <  2:531896/93‑1 (MQ=255)
                                  tataGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGc                                                       >  1:4229067/1‑93 (MQ=255)
                                      gAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCagag                                                   <  1:4474547/93‑1 (MQ=255)
                                      gAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCagag                                                   >  2:1037812/1‑93 (MQ=255)
                                       aaaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGt                                                  <  2:206905/93‑1 (MQ=255)
                                        aaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTa                                                 >  2:1157923/1‑93 (MQ=255)
                                        aaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTa                                                 <  1:2409881/93‑1 (MQ=255)
                                        aaTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTa                                                 <  2:1944588/93‑1 (MQ=255)
                                           aGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGt                                              <  2:3952636/93‑1 (MQ=255)
                                           aGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGt                                              >  1:336037/1‑93 (MQ=255)
                                           aGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGt                                              <  1:3347603/93‑1 (MQ=255)
                                            ggCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTg                                             <  2:3707420/93‑1 (MQ=255)
                                            ggCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTg                                             >  1:2221076/1‑93 (MQ=255)
                                              cAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTgga                                           <  1:1542535/93‑1 (MQ=255)
                                              cAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTgga                                           <  2:1862389/93‑1 (MQ=255)
                                              cAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTgga                                           <  2:2877470/93‑1 (MQ=255)
                                               aaaaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggag                                          <  1:2186951/93‑1 (MQ=255)
                                                aaaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggagg                                         >  1:176180/1‑93 (MQ=255)
                                                aaaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggagg                                         >  2:2647309/1‑93 (MQ=255)
                                                aaaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggagg                                         >  1:2845979/1‑93 (MQ=255)
                                                aaaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGGggagg                                         >  2:190126/1‑93 (MQ=255)
                                                 aaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggagga                                        >  2:3286428/1‑93 (MQ=255)
                                                 aaaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTggagga                                        <  2:2852895/93‑1 (MQ=255)
                                                  aaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGAc                                       <  2:2527003/93‑1 (MQ=255)
                                                  aaTGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGAc                                       <  1:1124413/93‑1 (MQ=255)
                                                   atgatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACt                                      >  2:1258976/1‑93 (MQ=255)
                                                    tgatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTc                                     >  1:3531529/1‑93 (MQ=255)
                                                     gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTcc                                    <  2:634810/93‑1 (MQ=255)
                                                       tgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAg                                  >  2:479267/1‑93 (MQ=255)
                                                         ggAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAc                                <  2:1337489/93‑1 (MQ=255)
                                                         ggAGAATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGAc                                >  1:1294803/1‑93 (MQ=255)
                                                          gagaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACa                               <  2:641062/93‑1 (MQ=255)
                                                          gagaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACa                               <  2:2312991/93‑1 (MQ=255)
                                                          gagaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACa                               <  2:2144936/93‑1 (MQ=255)
                                                          gagaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACa                               >  1:3071967/1‑93 (MQ=255)
                                                           agaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAg                              <  2:4021242/93‑1 (MQ=255)
                                                            gaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGt                             >  1:3005328/1‑93 (MQ=255)
                                                            gaATTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGt                             >  2:3305724/1‑93 (MQ=255)
                                                             aaTTCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTACAGACAGTc                            >  2:2933480/1‑93 (MQ=255)
                                                               ttCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaa                          >  2:4532100/1‑93 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                         <  1:1934694/93‑1 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                         >  1:1040466/1‑93 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                         <  1:3623166/93‑1 (MQ=255)
                                                                tCTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCaaa                         >  1:2572872/1‑93 (MQ=255)
                                                                 cTGAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAAc                        <  2:3796916/93‑1 (MQ=255)
                                                                   gAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGa                      <  1:2535765/93‑1 (MQ=255)
                                                                   gAATTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTACAGACAGTCAAACGa                      >  1:1300351/1‑93 (MQ=255)
                                                                     aTTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATa                    <  1:2915509/93‑1 (MQ=255)
                                                                     aTTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATa                    <  1:1838633/93‑1 (MQ=255)
                                                                     aTTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATa                    <  1:2041734/93‑1 (MQ=255)
                                                                     aTTTTGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATa                    <  2:3403050/93‑1 (MQ=255)
                                                                      ttttGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAg                   >  2:4290936/1‑93 (MQ=255)
                                                                       tttGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGTAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGa                  <  2:1829508/93‑1 (MQ=255)
                                                                         tGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaaa                <  2:4352012/93‑1 (MQ=255)
                                                                         tGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaaa                <  1:186460/93‑1 (MQ=255)
                                                                         tGGCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaaa                <  1:251374/93‑1 (MQ=255)
                                                                           gCCACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGaaaaa              <  1:4019582/93‑1 (MQ=255)
                                                                            ccACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAg             <  2:2709230/93‑1 (MQ=255)
                                                                             cACGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGa            >  1:135302/1‑93 (MQ=255)
                                                                              aCGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGAt           >  1:4319483/1‑93 (MQ=255)
                                                                              aCGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGAt           <  1:1031963/93‑1 (MQ=255)
                                                                              aCGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGAt           <  1:3222469/93‑1 (MQ=255)
                                                                               cGGAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATa          <  1:2961466/93‑1 (MQ=255)
                                                                                ggAAAATAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAg         >  1:4168235/1‑93 (MQ=255)
                                                                                   aaaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCt      <  2:3643457/93‑1 (MQ=255)
                                                                                   aaaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCt      <  1:966343/93‑1 (MQ=255)
                                                                                   aaaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCt      <  1:134147/93‑1 (MQ=255)
                                                                                    aaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCtt     >  1:2671460/1‑93 (MQ=255)
                                                                                    aaTAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCtt     >  2:2005287/1‑93 (MQ=255)
                                                                                      tAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTa   <  1:1452869/93‑1 (MQ=255)
                                                                                      tAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTa   <  2:1955642/93‑1 (MQ=255)
                                                                                      tAAGCATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTa   <  1:2061546/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTCACTCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTAT  >  NC_000913/3621325‑3621504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: