Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,678,204 G→A P456L (CCG→CTG)  yhjJ ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,678,2040GA100.0% 1009.4 / NA 275P456L (CCG→CTG) yhjJhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (114/161);  total (114/161)

Only 100 of 279 total aligned reads displayed.

TCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT  >  NC_000913/3678114‑3678292
                                                                                          |                                                                                        
 cATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCt                                                                                       <  2:3038407/93‑1 (MQ=255)
  aTCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTc                                                                                      >  2:1345375/1‑93 (MQ=255)
  aTCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTc                                                                                      <  2:1423145/93‑1 (MQ=255)
   tCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCg                                                                                     >  1:4485787/1‑93 (MQ=255)
   tCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCg                                                                                     >  1:1666655/1‑93 (MQ=255)
    ccGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGc                                                                                    >  2:3794710/1‑93 (MQ=255)
     cGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGcc                                                                                   >  1:4153863/1‑93 (MQ=255)
         gCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTc                                                                               <  2:1497346/93‑1 (MQ=255)
            aCAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGc                                                                            <  1:2047291/93‑1 (MQ=255)
            aCAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCCCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGc                                                                            >  1:392448/1‑93 (MQ=255)
              agagGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTg                                                                          >  2:1903673/1‑93 (MQ=255)
               gagGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgc                                                                         <  2:3720176/93‑1 (MQ=255)
               gagGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCAGCTgc                                                                         >  2:2032955/1‑93 (MQ=255)
                agGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgca                                                                        >  1:2667229/1‑93 (MQ=255)
                 ggtggtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgcag                                                                       >  2:2629162/1‑93 (MQ=255)
                  gtggtCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgcagc                                                                      <  2:3642934/93‑1 (MQ=255)
                   tgggCGCAGCGGCGGTAGATGGGGCCATGATTTGACCCCAGACCCCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTgcagca                                                                     <  1:1053329/93‑1 (MQ=255)
                      tCGCAGCGGTGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACTCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTa                                                                  <  2:638698/93‑1 (MQ=255)
                       cGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTAt                                                                 <  1:2378093/93‑1 (MQ=255)
                        gCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTAtt                                                                <  1:1980013/93‑1 (MQ=255)
                          aGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTaa                                                              <  2:841585/93‑1 (MQ=255)
                          aGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTaa                                                              <  1:3102041/93‑1 (MQ=255)
                           gcggcgGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAc                                                             <  1:1462264/93‑1 (MQ=255)
                           gcgccgGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAAc                                                             <  1:3183326/93‑1 (MQ=255)
                            cggcggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACg                                                            >  1:1831632/1‑93 (MQ=255)
                             ggcggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGc                                                           >  2:884543/1‑93 (MQ=255)
                             ggcggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGc                                                           >  1:16056/1‑93 (MQ=255)
                             ggcggTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGc                                                           <  1:4633485/93‑1 (MQ=255)
                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  2:2754693/93‑1 (MQ=255)
                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  2:2476487/93‑1 (MQ=255)
                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  2:1214893/93‑1 (MQ=255)
                                 gTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  2:4484381/93‑1 (MQ=255)
                                 gTAGATGGGGCAATGATTTGATCCGAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCata                                                       <  1:2944783/93‑1 (MQ=255)
                                  tAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCatat                                                      >  1:913488/1‑93 (MQ=255)
                                  tAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCatat                                                      <  1:3531537/93‑1 (MQ=255)
                                  tAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCatat                                                      >  2:1746512/1‑93 (MQ=255)
                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                    <  2:1619403/93‑1 (MQ=255)
                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                    >  2:3367299/1‑93 (MQ=255)
                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                    <  1:3156711/93‑1 (MQ=255)
                                    gATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCa                                                    >  2:3513080/1‑93 (MQ=255)
                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                   >  2:2780046/1‑93 (MQ=255)
                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                   >  1:4509669/1‑93 (MQ=255)
                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                   <  2:1889335/93‑1 (MQ=255)
                                     aTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAt                                                   <  2:752741/93‑1 (MQ=255)
                                      tGGGTCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                  <  2:4555848/93‑1 (MQ=255)
                                      tGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                  <  1:769175/93‑1 (MQ=255)
                                      tGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                  >  2:324032/1‑93 (MQ=255)
                                      tGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCAtt                                                  >  2:2930885/1‑93 (MQ=255)
                                       ggggCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTc                                                 <  1:4434106/93‑1 (MQ=255)
                                       ggggCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGAATTAACGCCATATCATTc                                                 >  2:547984/1‑93 (MQ=255)
                                          gCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGAc                                              >  1:2446319/1‑93 (MQ=255)
                                           ccATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAACTCCAGCCCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACa                                             <  2:4622524/93‑1 (MQ=255)
                                               gATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTg                                         <  2:3399873/93‑1 (MQ=255)
                                                 tttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGtt                                       >  1:2089259/1‑93 (MQ=255)
                                                 tttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGtt                                       <  1:3010520/93‑1 (MQ=255)
                                                 tttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGtt                                       >  1:1122442/1‑93 (MQ=255)
                                                  ttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTg                                      >  1:3451619/1‑93 (MQ=255)
                                                  ttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTg                                      >  1:3363768/1‑93 (MQ=255)
                                                  ttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTg                                      >  2:113120/1‑93 (MQ=255)
                                                  ttGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTg                                      <  2:2414857/93‑1 (MQ=255)
                                                   tGATCCCAGACCGCCTGCAGCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGa                                     <  1:4325204/93‑1 (MQ=255)
                                                   tGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGa                                     <  2:1571555/93‑1 (MQ=255)
                                                    taTCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAc                                    <  1:3341795/92‑1 (MQ=255)
                                                    gATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGAc                                    <  1:2736499/93‑1 (MQ=255)
                                                     aTCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACg                                   >  1:3645170/1‑93 (MQ=255)
                                                       cccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCa                                 <  2:2109272/93‑1 (MQ=255)
                                                        ccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAg                                <  2:1395697/93‑1 (MQ=255)
                                                        ccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAg                                >  2:678293/1‑93 (MQ=255)
                                                        ccAGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAg                                >  2:3351468/1‑93 (MQ=255)
                                                          aGACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGAt                              <  2:3489991/93‑1 (MQ=255)
                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             >  2:3671941/1‑93 (MQ=255)
                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             <  2:1373533/93‑1 (MQ=255)
                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             <  1:2895719/93‑1 (MQ=255)
                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             >  1:3213056/1‑93 (MQ=255)
                                                           gACCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATc                             >  2:1143350/1‑93 (MQ=255)
                                                            aCCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATcc                            <  2:4132296/93‑1 (MQ=255)
                                                            aCCGCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATcc                            >  2:2868480/1‑93 (MQ=255)
                                                               gCCTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGa                         <  2:3066076/93‑1 (MQ=255)
                                                                 cTGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGAtt                       <  2:4659423/93‑1 (MQ=255)
                                                                  tGCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGAttt                      <  2:2161300/93‑1 (MQ=255)
                                                                   gCAACGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTa                     <  1:585564/93‑1 (MQ=255)
                                                                     aaCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAc                   <  1:1285095/93‑1 (MQ=255)
                                                                     aaCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAAc                   <  1:2419452/93‑1 (MQ=255)
                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  <  1:2563882/93‑1 (MQ=255)
                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  <  1:3931323/93‑1 (MQ=255)
                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  <  2:959905/93‑1 (MQ=255)
                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  >  1:949342/1‑93 (MQ=255)
                                                                      aCGCTTTCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACa                  <  1:1518269/93‑1 (MQ=255)
                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc              >  2:4241613/1‑93 (MQ=255)
                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc              >  2:4333508/1‑93 (MQ=255)
                                                                          tttCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc              >  1:224329/1‑93 (MQ=255)
                                                                            tCATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTa            <  2:3123167/93‑1 (MQ=255)
                                                                             cATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAc           <  1:4057711/93‑1 (MQ=255)
                                                                             cATGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAc           <  2:3201303/93‑1 (MQ=255)
                                                                              aTGTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTAcc          <  1:3702106/93‑1 (MQ=255)
                                                                                gTTAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGt        >  2:3927735/1‑93 (MQ=255)
                                                                                 ttAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTc       >  2:4047006/1‑93 (MQ=255)
                                                                                 ttAAATTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTc       <  1:3463066/93‑1 (MQ=255)
                                                                                     aTTCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGc   <  1:625975/93‑1 (MQ=255)
                                                                                      ttCCAGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCt  >  1:1041107/1‑93 (MQ=255)
                                                                                          |                                                                                        
TCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCT  >  NC_000913/3678114‑3678292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: