BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,795,233	T→C	L220P (CTG→CCG)	rfaL →	O‑antigen ligase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,795,233	0	T	C	100.0%	463.4 / NA	146	L220P (CTG→CCG)	rfaL	O‑antigen ligase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (97/49); total (97/49)

Only 100 of 146 total aligned reads displayed.

CTAAGAAAAATCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCTGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAATTGCTA  >  NC_000913/3795143‑3795322

cTAAGAAAAATCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGt                                                                                         >  2:810974/1‑93 (MQ=255)

cTAAGAAAAATCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGt                                                                                         >  2:2029062/1‑93 (MQ=255)

    gAAAAATCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTccc                                                                                     <  2:426149/93‑1 (MQ=255)

        aaTCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCtata                                                                                 >  1:1785309/1‑93 (MQ=255)

         atcatcCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATaa                                                                                <  2:2364199/93‑1 (MQ=255)

          tcatcCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAAt                                                                               <  2:924873/93‑1 (MQ=255)

            atcCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAAttt                                                                             <  2:3695415/93‑1 (MQ=255)

            atcCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAAttt                                                                             <  2:2840066/93‑1 (MQ=255)

              ccTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTtgt                                                                           >  2:373050/1‑93 (MQ=255)

               cTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTtgtg                                                                          >  2:2577440/1‑93 (MQ=255)

                ttttttATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTgtgt                                                                         >  2:1749/1‑93 (MQ=255)

                     tatttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgctg                                                                    >  2:568413/1‑93 (MQ=255)

                     tatttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgctg                                                                    >  1:1319900/1‑93 (MQ=255)

                     tatttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgctg                                                                    >  1:1319899/1‑93 (MQ=255)

                      atttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgctgc                                                                   <  2:2357970/93‑1 (MQ=255)

                      atttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTtgctgc                                                                   >  1:1915167/1‑93 (MQ=255)

                       tttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCa                                                                  >  2:3061692/1‑93 (MQ=255)

                       tttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCa                                                                  >  2:535016/1‑93 (MQ=255)

                        ttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCAt                                                                 <  1:4609992/93‑1 (MQ=255)

                        ttttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCAt                                                                 >  2:127516/1‑93 (MQ=255)

                         tttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCAtt                                                                >  1:4066476/1‑93 (MQ=255)

                         tttattAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCAtt                                                                >  1:2067996/1‑93 (MQ=255)

                          ttattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTa                                                               >  2:2493734/1‑93 (MQ=255)

                          ttattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGCTGCTGCATTa                                                               >  1:3815356/1‑93 (MQ=255)

                           tattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTaa                                                              >  1:1482079/1‑93 (MQ=255)

                           tattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTaa                                                              >  1:426617/1‑93 (MQ=255)

                           tattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTaa                                                              >  1:4151575/1‑93 (MQ=255)

                           tattaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTaa                                                              >  2:495871/1‑93 (MQ=255)

                            attaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAAt                                                             >  2:3922693/1‑93 (MQ=255)

                            attaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAAt                                                             >  2:4062046/1‑93 (MQ=255)

                             ttaAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATa                                                            <  1:744321/93‑1 (MQ=255)

                               aaaTATTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTCCTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGc                                                          <  1:4319141/93‑1 (MQ=255)

                               aaaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGc                                                          >  2:3161647/1‑93 (MQ=255)

                               aaaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGc                                                          >  2:3664180/1‑93 (MQ=255)

                                aaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCt                                                         >  2:1814266/1‑93 (MQ=255)

                                aaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCt                                                         >  2:1424867/1‑93 (MQ=255)

                                aaTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCt                                                         >  2:2853406/1‑93 (MQ=255)

                                 aTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCtt                                                        <  2:3513326/93‑1 (MQ=255)

                                 aTAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCtt                                                        >  2:1884361/1‑93 (MQ=255)

                                  tAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCtta                                                       >  2:1002403/1‑93 (MQ=255)

                                  tAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCtta                                                       >  1:2621448/1‑93 (MQ=255)

                                  tAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCtta                                                       >  1:981476/1‑93 (MQ=255)

                                  tAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCC‑ACTCCCGTTCCCTTTAATTTGTGTTGCTTCATTAATTACttat                                                      >  1:1868399/1‑93 (MQ=255)

                                   aGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCttat                                                      <  1:3504489/93‑1 (MQ=255)

                                   aGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCttat                                                      <  1:3929689/93‑1 (MQ=255)

                                    gTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTCATAGCttatt                                                     >  1:2531886/1‑93 (MQ=255)

                                    gTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCttatt                                                     >  1:566628/1‑93 (MQ=255)

                                      tGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTtattat                                                   <  2:1198477/93‑1 (MQ=255)

                                      tGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTtattat                                                   <  2:2617494/93‑1 (MQ=255)

                                      tGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTtattat                                                   <  2:470799/93‑1 (MQ=255)

                                       gcgcGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATtata                                                  <  2:120229/93‑1 (MQ=255)

                                       gcgcGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATtata                                                  <  1:1865709/93‑1 (MQ=255)

                                       gcgcGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATtata                                                  >  2:3632811/1‑93 (MQ=255)

                                         gcgGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTataat                                                <  1:1080921/93‑1 (MQ=255)

                                         gcgGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTataat                                                >  1:3773848/1‑93 (MQ=255)

                                          cgGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTataata                                               >  2:2502845/1‑93 (MQ=255)

                                           ggTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTAtaataa                                              >  2:2733857/1‑93 (MQ=255)

                                           ggTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTAtaataa                                              >  1:1187133/1‑93 (MQ=255)

                                           ggTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTAtaataa                                              >  1:164230/1‑93 (MQ=255)

                                           ggTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTAtaataa                                              <  2:72864/93‑1 (MQ=255)

                                           ggTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTAtaataa                                              <  2:3350759/93‑1 (MQ=255)

                                             tACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAAt                                            >  2:649261/1‑93 (MQ=255)

                                             tACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAAt                                            >  2:164124/1‑93 (MQ=255)

                                              aCTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATc                                           >  2:67162/1‑93 (MQ=255)

                                              aCTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATc                                           >  1:3800061/1‑93 (MQ=255)

                                               cTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCa                                          >  2:1084699/1‑93 (MQ=255)

                                                 ttATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCAcc                                        <  1:2907138/93‑1 (MQ=255)

                                                 ttATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCAcc                                        <  1:3758637/93‑1 (MQ=255)

                                                  tATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCAccc                                       >  2:3837645/1‑93 (MQ=255)

                                                   aTGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCa                                      >  1:1865160/1‑93 (MQ=255)

                                                    tGTTCTGGCGCTAACACAAACCAGAGCACCCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCaa                                     <  2:3460794/93‑1 (MQ=255)

                                                    tGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCaa                                     <  1:2209268/93‑1 (MQ=255)

                                                    tGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCaa                                     >  2:3152104/1‑93 (MQ=255)

                                                     gTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAg                                    <  1:3889982/93‑1 (MQ=255)

                                                     gTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAg                                    >  1:2667952/1‑93 (MQ=255)

                                                      ttCTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGa                                   >  1:2994206/1‑93 (MQ=255)

                                                        cTGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGaaa                                 <  1:369472/93‑1 (MQ=255)

                                                         tGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAAt                                >  1:3702661/1‑93 (MQ=255)

                                                         tGGCGCTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAAt                                >  2:2954894/1‑93 (MQ=255)

                                                            cgcTAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCa                             <  2:4440711/93‑1 (MQ=255)

                                                              ccaaCACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACt                           >  2:3614262/3‑93 (MQ=255)

                                                               tAACACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACtt                          >  1:1021768/1‑93 (MQ=255)

                                                                aaCACAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTc                         >  2:2718028/1‑93 (MQ=255)

                                                                 acacAAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTcc                        <  2:3311352/93‑1 (MQ=255)

                                                                  cacaAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCct                       >  2:880571/1‑93 (MQ=255)

                                                                   acaAACCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCctc                      >  1:2632223/1‑93 (MQ=255)

                                                                     aaaCCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTa                    >  2:4098344/1‑93 (MQ=255)

                                                                     aaaCCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTa                    >  1:571607/1‑93 (MQ=255)

                                                                     aaaCCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTa                    >  1:1195261/1‑93 (MQ=255)

                                                                     aaaCCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTa                    <  2:661441/93‑1 (MQ=255)

                                                                       aCCAGAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTAtt                  >  2:423497/1‑93 (MQ=255)

                                                                        ccACAGCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTg                 <  2:2674567/93‑1 (MQ=255)

                                                                          agagCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGtt               >  1:1024533/1‑93 (MQ=255)

                                                                          agagCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGtt               <  2:573731/93‑1 (MQ=255)

                                                                          agagCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGtt               >  2:2161489/1‑93 (MQ=255)

                                                                            agCAACCCTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTct             >  2:4399467/1‑93 (MQ=255)

                                                                                   cTACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAAtt      >  1:1535659/1‑93 (MQ=255)

                                                                                    tACTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAATTg     >  2:926672/1‑93 (MQ=255)

                                                                                     aCTCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAATTGc    >  2:1247520/1‑93 (MQ=255)

                                                                                       tCCCGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAATTGCta  >  1:2433975/1‑93 (MQ=255)

CTAAGAAAAATCATCCTTTTTTATTTTTATTAAATAGTTGCGCGGTACTTTATGTTCTGGCGCTAACACAAACCAGAGCAACCCTACTCCTGTTCCCTATAATTTGTGTTGCTGCATTAATAGCTTATTATAATAAATCACCCAAGAAATTCACTTCCTCTATTGTTCTACTAATTGCTA  >  NC_000913/3795143‑3795322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`