BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	405,539	A→G	intergenic (+93/‑90)	yaiI → / → aroL	hypothetical protein/shikimate kinase II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	405,539	0	A	G	100.0%	606.6 / NA	187	intergenic (+93/‑90)	yaiI/aroL	hypothetical protein/shikimate kinase II
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (115/72); total (115/72)

Only 100 of 188 total aligned reads displayed.

GTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACG  >  NC_000913/405449‑405628

gTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCa                                                                                         <  1:4140686/93‑1 (MQ=255)

gTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCa                                                                                         >  1:2180982/1‑93 (MQ=255)

  aaTTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAAt                                                                                       >  1:1108104/1‑93 (MQ=255)

      tattatTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGaa                                                                                   >  1:2920654/1‑93 (MQ=255)

       attattTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGaaa                                                                                  <  2:1410805/93‑1 (MQ=255)

       attattTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGaaa                                                                                  >  2:3350473/1‑93 (MQ=255)

        ttattTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAAt                                                                                 <  1:3573148/93‑1 (MQ=255)

          attTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTg                                                                               >  1:2217598/1‑93 (MQ=255)

          attTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTg                                                                               <  1:4290656/93‑1 (MQ=255)

          attTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTg                                                                               >  2:2053414/1‑93 (MQ=255)

          attTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTg                                                                               >  1:3054908/1‑93 (MQ=255)

          attTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTg                                                                               <  1:2823399/93‑1 (MQ=255)

           tttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGt                                                                              >  1:542464/1‑93 (MQ=255)

           tttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGt                                                                              >  1:1883957/1‑93 (MQ=255)

           tttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGt                                                                              >  2:4637857/1‑93 (MQ=255)

           tttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGt                                                                              >  2:3666913/1‑93 (MQ=255)

           tttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGt                                                                              <  1:4558761/93‑1 (MQ=255)

           tttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGt                                                                              >  2:1022609/1‑93 (MQ=255)

            ttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTa                                                                             <  2:238389/93‑1 (MQ=255)

            ttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTa                                                                             >  1:4678158/1‑93 (MQ=255)

            ttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTa                                                                             >  2:3135728/1‑93 (MQ=255)

            ttACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTa                                                                             <  2:3225671/93‑1 (MQ=255)

             tACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTTTAc                                                                            <  2:2694169/93‑1 (MQ=255)

             tACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTAc                                                                            >  2:2918771/1‑93 (MQ=255)

              acacTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACt                                                                           >  2:1851433/1‑93 (MQ=255)

              acacTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACt                                                                           <  1:1546066/93‑1 (MQ=255)

                 cTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGt                                                                        >  1:68549/1‑93 (MQ=255)

                 cTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGt                                                                        <  2:1815320/93‑1 (MQ=255)

                  ttCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGtt                                                                       <  1:2793730/93‑1 (MQ=255)

                   tCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGttt                                                                      >  2:3259087/1‑93 (MQ=255)

                     aTTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGCGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGa                                                                    >  2:196904/1‑93 (MQ=255)

                     aTTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGa                                                                    >  1:146844/1‑93 (MQ=255)

                     aTTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGa                                                                    >  1:1512999/1‑93 (MQ=255)

                      ttCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCACTCGAAATTGTACTAGTTTGAt                                                                   >  1:1797371/1‑93 (MQ=255)

                        cTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATgg                                                                 >  1:148891/1‑93 (MQ=255)

                        cTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATgg                                                                 <  1:4517/93‑1 (MQ=255)

                          tGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTa                                                               <  2:4505865/93‑1 (MQ=255)

                           gAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTAt                                                              >  2:1591482/1‑93 (MQ=255)

                           gAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTAt                                                              >  2:1728745/1‑93 (MQ=255)

                           gAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTAt                                                              <  1:4102811/93‑1 (MQ=255)

                           gAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTAt                                                              >  1:1003351/1‑93 (MQ=255)

                            aaTATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATg                                                             >  2:2962197/1‑93 (MQ=255)

                              tatttattGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGAt                                                           >  2:2272970/1‑93 (MQ=255)

                              tatttattGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGAt                                                           >  2:4590374/1‑93 (MQ=255)

                              tatttattGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGAt                                                           >  2:3505096/1‑93 (MQ=255)

                              tatttattGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGAt                                                           >  2:3447743/1‑93 (MQ=255)

                                 ttattGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGc                                                        <  1:2544626/93‑1 (MQ=255)

                                 ttattGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGc                                                        >  1:3175166/1‑93 (MQ=255)

                                 ttattGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGc                                                        >  2:4044674/1‑93 (MQ=255)

                                   attGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGACATTGTACTAGTTTGATGGTATGATCGCTa                                                      >  1:789833/1‑93 (MQ=255)

                                    ttGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTAt                                                     <  2:3793132/93‑1 (MQ=255)

                                      ggTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATtc                                                   >  1:1757986/1‑93 (MQ=255)

                                      ggTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATtc                                                   <  2:2501427/93‑1 (MQ=255)

                                         ataGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCa                                                >  1:1172293/1‑93 (MQ=255)

                                         ataGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCa                                                <  1:1102309/93‑1 (MQ=255)

                                          taGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCAt                                               >  2:4277485/1‑93 (MQ=255)

                                           aGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATg                                              <  2:2418427/93‑1 (MQ=255)

                                             tAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGac                                            <  2:880274/93‑1 (MQ=255)

                                               aGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGacac                                          >  1:491310/1‑93 (MQ=255)

                                               aGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGacac                                          >  1:4053219/1‑93 (MQ=255)

                                                      tATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCttt                                   >  1:2375154/1‑93 (MQ=255)

                                                      tATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCttt                                   >  1:3089162/1‑93 (MQ=255)

                                                      tATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCttt                                   >  1:3113652/1‑93 (MQ=255)

                                                       aTTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTc                                  >  2:1917315/1‑93 (MQ=255)

                                                        ttGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTcg                                 >  2:4254900/1‑93 (MQ=255)

                                                        ttGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTcg                                 >  1:3881818/1‑93 (MQ=255)

                                                        ttGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGCACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCttttg                                 >  2:2888162/1‑91 (MQ=255)

                                                         tGAGATTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTcgc                                >  2:1072319/1‑93 (MQ=255)

                                                           agaTTTTCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTcgccg                              >  1:1238309/1‑93 (MQ=255)

                                                               tttCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCAtt                          <  2:1657644/93‑1 (MQ=255)

                                                               tttCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCAtt                          <  1:3780452/93‑1 (MQ=255)

                                                                 tCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGGTGGTATGATCGCTATTCTCATGACACCGGCTTTCGGCGCATTga                        >  2:414247/1‑92 (MQ=255)

                                                                 tCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGc                        >  2:3832932/1‑93 (MQ=255)

                                                                 tCACTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGc                        >  1:1914616/1‑93 (MQ=255)

                                                                    cTTTAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGAc                     <  1:1045265/93‑1 (MQ=255)

                                                                     tttAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGAcc                    >  1:3972882/1‑93 (MQ=255)

                                                                     tttAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGAcc                    >  1:1338655/1‑93 (MQ=255)

                                                                      ttAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCt                   >  1:2960908/1‑93 (MQ=255)

                                                                      ttAAGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCt                   <  1:707438/93‑1 (MQ=255)

                                                                        aaGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTAt                 <  2:3283594/93‑1 (MQ=255)

                                                                        aaGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTAt                 >  2:3862344/1‑93 (MQ=255)

                                                                         aGTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTAtt                <  2:3943761/93‑1 (MQ=255)

                                                                          gTGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTg               >  2:2269020/1‑93 (MQ=255)

                                                                           tGGAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTgg              <  1:1688000/93‑1 (MQ=255)

                                                                            ggAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTggg             <  1:1064882/93‑1 (MQ=255)

                                                                             gAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTgggg            <  2:559624/93‑1 (MQ=255)

                                                                             gAATTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTgggg            >  2:4428270/1‑93 (MQ=255)

                                                                               aTTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGaa          >  1:2472498/1‑93 (MQ=255)

                                                                               aTTTTTTCTTTGCAATCGAAATTGTACTAGTTTGATGGTACGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGaa          >  1:3259642/1‑93 (MQ=255)

                                                                                 tttttCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGaaaa        <  2:2587170/93‑1 (MQ=255)

                                                                                 tttttCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGaaaa        >  2:794829/1‑93 (MQ=255)

                                                                                  ttttCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAAc       >  1:880932/1‑93 (MQ=255)

                                                                                   tttCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAAcc      >  1:1842198/1‑93 (MQ=255)

                                                                                   tttCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAAcc      <  2:2720226/93‑1 (MQ=255)

                                                                                     tCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCa    <  2:1651961/93‑1 (MQ=255)

                                                                                     tCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCa    <  1:2104446/93‑1 (MQ=255)

                                                                                     tCTTTGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCCCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCa    >  1:3494748/1‑93 (MQ=255)

                                                                                       tttGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACg  >  1:4300314/1‑93 (MQ=255)

                                                                                       tttGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACg  >  1:3353745/1‑93 (MQ=255)

                                                                                       tttGCAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACg  >  1:3357544/1‑93 (MQ=255)

GTAATTTATTATTTACACTTCATTCTTGAATATTTATTGGTATAGTAAGGGGTGTATTGAGATTTTCACTTTAAGTGGAATTTTTTCTTTACAATCGAAATTGTACTAGTTTGATGGTATGATCGCTATTCTCATGACACCGGCTTTCGCCGCATTGCGACCTATTGGGGAAAACCCACG  >  NC_000913/405449‑405628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`