BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	411,562	T→C	A76A (GCA→GCG)	araJ ←	AraJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	411,562	0	T	C	99.4%	519.4 / ‑4.8	167	A76A (GCA→GCG)	araJ	AraJ
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (81/85); total (81/86)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.42e-01

Only 100 of 178 total aligned reads displayed.

GCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATT  >  NC_000913/411472‑411650

gCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAgcgc                                                                                        >  1:2921309/1‑93 (MQ=255)

 cacaACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCa                                                                                       >  1:3986744/1‑93 (MQ=255)

   caACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCata                                                                                     <  2:2251995/93‑1 (MQ=255)

    aaCGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataa                                                                                    <  2:3630113/93‑1 (MQ=255)

    aaCGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataa                                                                                    <  1:1805508/93‑1 (MQ=255)

    aaCGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataa                                                                                    <  1:345701/93‑1 (MQ=255)

     aCGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataat                                                                                   >  2:3250402/1‑93 (MQ=255)

     aCGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataat                                                                                   >  2:3186469/1‑93 (MQ=255)

     aCGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataat                                                                                   >  1:276473/1‑93 (MQ=255)

      cGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataata                                                                                  <  1:359888/93‑1 (MQ=255)

       gCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATAc                                                                                 >  2:4550760/1‑93 (MQ=255)

        ccaccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACg                                                                                >  1:1129407/1‑93 (MQ=255)

         caccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAATAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACga                                                                               <  1:4184377/93‑1 (MQ=255)

         caccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACga                                                                               <  2:885749/93‑1 (MQ=255)

           ccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACgaga                                                                             >  1:4303988/1‑93 (MQ=255)

              gAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCa                                                                          >  1:1094277/1‑93 (MQ=255)

               aaaCAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCat                                                                         <  2:1376798/93‑1 (MQ=255)

               aaaCAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCat                                                                         >  1:2115614/1‑93 (MQ=255)

                aacaacAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATCCGAGATCata                                                                        <  1:3010039/93‑1 (MQ=255)

                aacaacAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCata                                                                        <  2:1892017/93‑1 (MQ=255)

                aacaacAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCata                                                                        <  1:3045488/93‑1 (MQ=255)

                 acaacaAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCatat                                                                       <  1:1239879/93‑1 (MQ=255)

                  caacaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCCCCACCCCCAGCGCCTAATACGAGATCatatc                                                                      >  1:3356177/1‑92 (MQ=255)

                   aacaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGc                                                                     <  1:4280090/93‑1 (MQ=255)

                    acaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGcc                                                                    >  1:2283352/1‑93 (MQ=255)

                    acaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGcc                                                                    >  1:1603858/1‑93 (MQ=255)

                    acaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGcc                                                                    >  2:3793416/1‑93 (MQ=255)

                    acaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGcc                                                                    >  1:1978296/1‑93 (MQ=255)

                      aaGATATGTTTGAGTGAGTAGCGGCTGGGAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcg                                                                  >  2:4024469/1‑93 (MQ=255)

                      aaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGGAACGACCACCACCCCCAGAGCATAATACGAGATCATATGCAcg                                                                  >  1:1710269/1‑93 (MQ=255)

                      aaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcg                                                                  <  2:2497185/93‑1 (MQ=255)

                       aGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcgg                                                                 >  2:4107628/1‑93 (MQ=255)

                       aGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcgg                                                                 >  1:129081/1‑93 (MQ=255)

                        gATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCGCCACCCCCAGCGCATAATACGAGATCATATGCCcggc                                                                <  2:2898522/93‑1 (MQ=255)

                        gATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATCATACGAGGTCATATGCCcggg                                                                >  2:2349057/1‑92 (MQ=255)

                        gATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcggc                                                                <  1:1204974/93‑1 (MQ=255)

                         atatGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcggcg                                                               >  2:205301/1‑93 (MQ=255)

                          tatGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCGCCCCCAGCGCATAATACGAGATCATATGCCcggcgg                                                              <  2:1404537/93‑1 (MQ=255)

                            tGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCa                                                            <  2:822719/93‑1 (MQ=255)

                               ttGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGa                                                         <  1:1490848/93‑1 (MQ=255)

                                tgagtgagTAGCGGCTGGAAAAGAGTGCGATGATTGGCGTACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGaa                                                        <  1:4108291/93‑1 (MQ=255)

                                tgagtgagTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGaa                                                        <  1:2773423/93‑1 (MQ=255)

                                tgagtgagTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGaa                                                        <  1:48344/93‑1 (MQ=255)

                                 gagtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAAt                                                       <  1:3537610/93‑1 (MQ=255)

                                 gagtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAAt                                                       <  1:2153972/93‑1 (MQ=255)

                                   gtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCg                                                     >  1:949150/1‑93 (MQ=255)

                                    tgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGa                                                    >  2:2205116/1‑93 (MQ=255)

                                     gagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGCATCGaa                                                   >  2:186112/1‑93 (MQ=255)

                                     gagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGaa                                                   <  1:3399925/93‑1 (MQ=255)

                                       gtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAAt                                                 <  1:2428612/93‑1 (MQ=255)

                                       atAGCGGCTAGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAAt                                                 <  1:2719532/92‑1 (MQ=255)

                                          gCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTcc                                              >  2:1645953/1‑93 (MQ=255)

                                            ggCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTa                                            >  2:2376118/1‑93 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                           <  1:4404843/93‑1 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                           >  1:3981874/1‑93 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                           >  1:3839715/1‑93 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                           >  1:3554493/1‑93 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                           >  2:4506102/1‑93 (MQ=255)

                                              cgggAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACg                                          >  2:4616253/3‑93 (MQ=255)

                                              cTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACg                                          <  1:2433402/93‑1 (MQ=255)

                                                 gAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTa                                       <  1:424108/93‑1 (MQ=255)

                                                 gAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTa                                       <  1:2247327/93‑1 (MQ=255)

                                                 gAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTa                                       <  2:716314/93‑1 (MQ=255)

                                                  aaaaGAGTGCGATGATTGGCGCACAGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTAt                                      <  1:101547/93‑1 (MQ=255)

                                                   aaaGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATg                                     >  1:3796338/1‑93 (MQ=255)

                                                   aaaGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATg                                     >  2:2349436/1‑93 (MQ=255)

                                                    aaGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATgc                                    >  1:3650594/1‑93 (MQ=255)

                                                     agagTGCGATGATTGGCGCACCGACCACCACCCCCAGCGAATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTacggc                                   >  2:2355562/1‑89 (MQ=255)

                                                       agTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGcc                                 >  1:2842924/1‑93 (MQ=255)

                                                         tGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAg                               >  1:343819/1‑93 (MQ=255)

                                                          gCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGc                              <  1:3028450/93‑1 (MQ=255)

                                                            gatgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTc                            <  2:3497287/93‑1 (MQ=255)

                                                            gatgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTc                            >  2:270933/1‑93 (MQ=255)

                                                            gatgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTc                            >  2:2612838/1‑93 (MQ=255)

                                                            gatgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTc                            >  1:4519344/1‑93 (MQ=255)

                                                            gatgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCAGCCGGCAGGAATCGAAATTCCTACGTTATGCTCCAtctc                            >  1:1350064/1‑93 (MQ=255)

                                                              tgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCg                          <  1:431202/93‑1 (MQ=255)

                                                              tgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCg                          >  1:2543498/1‑93 (MQ=255)

                                                               gatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGt                         <  1:3517526/93‑1 (MQ=255)

                                                               gatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGt                         >  2:1512746/1‑93 (MQ=255)

                                                                atTGGCGCACCGACCACGACCCCCAGCGCTTAATATGAGATTATATGCCCGGCGGCAGGGCTCGAAATTCCTACGTTATGCGCCAGCTCCGtt                        >  2:4404400/1‑92 (MQ=255)

                                                                    gcgcACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCa                    <  2:2199632/93‑1 (MQ=255)

                                                                      gcACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACg                  >  1:653870/1‑93 (MQ=255)

                                                                       cACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGc                 <  2:4156596/93‑1 (MQ=255)

                                                                       cACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGc                 >  1:3718178/1‑93 (MQ=255)

                                                                       cACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGc                 >  2:1131124/1‑93 (MQ=255)

                                                                          cGACCGCCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCa              <  2:2219379/93‑1 (MQ=255)

                                                                          cGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCa              <  1:3852716/93‑1 (MQ=255)

                                                                             ccaccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATaa           >  2:3942756/1‑93 (MQ=255)

                                                                              caccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAAt          <  2:3431376/93‑1 (MQ=255)

                                                                              caccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAAt          >  1:1106970/1‑93 (MQ=255)

                                                                                 caccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGcc       >  1:4137882/1‑93 (MQ=255)

                                                                                  accCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCa      >  1:1755942/1‑93 (MQ=255)

                                                                                  accCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCa      <  1:2759525/93‑1 (MQ=255)

                                                                                   cccccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCaa     >  1:745933/1‑93 (MQ=255)

                                                                                    ccccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCaaa    <  1:3309576/93‑1 (MQ=255)

                                                                                     cccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAt   <  2:3679195/93‑1 (MQ=255)

                                                                                     cccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAt   >  2:4213851/1‑93 (MQ=255)

                                                                                      ccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCACAtt  >  2:3028335/1‑93 (MQ=255)

                                                                                      ccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAtt  >  1:375820/1‑93 (MQ=255)

GCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATT  >  NC_000913/411472‑411650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`