Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,991,539 T→C N45S (AAT→AGT) 
I26T (ATT→ACT) 
cyaY ←
b3808 →
hypothetical protein
hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,991,5390TC100.0% 711.5 / NA 219N45S (AAT→AGT) 
I26T (ATT→ACT) 
cyaY
b3808
hypothetical protein
hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (100/119);  total (100/119)

Only 100 of 234 total aligned reads displayed.

GCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTC  >  NC_000913/3991448‑3991628
                                                                                           |                                                                                         
 ccTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACtc                                                                                         >  1:3727945/1‑93 (MQ=255)
  cTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCActct                                                                                        >  1:3176060/1‑93 (MQ=255)
   tttCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGGTGATAATGATTTTGCTGCCACtctc                                                                                       >  1:998254/1‑93 (MQ=255)
    ttCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCa                                                                                      >  1:1782581/1‑93 (MQ=255)
     tCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCaa                                                                                     >  2:818274/1‑93 (MQ=255)
     tCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCaa                                                                                     <  2:3470988/93‑1 (MQ=255)
       aGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAg                                                                                   >  1:4377172/1‑93 (MQ=255)
       aGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAg                                                                                   >  2:4292272/1‑93 (MQ=255)
         gTCAAAAGGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGt                                                                                 <  1:4653401/93‑1 (MQ=255)
          tCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTa                                                                                >  1:532526/1‑93 (MQ=255)
            aaaaTGGTAGCCGCCCTGTTTGTTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAAt                                                                              <  2:4182934/93‑1 (MQ=255)
            aaaaTGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGTCGCCACTCTCAAAGGTAAt                                                                              >  1:4107025/1‑93 (MQ=255)
             aaaTGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATg                                                                             >  2:4569268/1‑93 (MQ=255)
              aaTGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATgg                                                                            <  2:3559466/93‑1 (MQ=255)
               agggTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGt                                                                           <  1:684387/91‑1 (MQ=255)
               aTGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGt                                                                           <  1:3376733/93‑1 (MQ=255)
               aTGGTACCCGCCCTGTTTGGTTCCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGt                                                                           <  1:2590919/93‑1 (MQ=255)
                gggTAGCCGCCCTGTTTGGTTGCCAGCCATCCCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTc                                                                          <  1:2488263/92‑1 (MQ=255)
                 ggcggccgtcGTGTTTGTTTTCCAGCCATACCGGGCGGGGCGTATCCTGGCGGTTCATAATGATTTTGCCGCCACTCTCAAAGGTAATGGTCa                                                                         <  2:3831155/89‑1 (MQ=255)
                 ggTAGCCGCCCGGTTTGGTTGCCAGCCAAACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGACACTCTCAAAGGTAATGGTCa                                                                         <  2:319570/93‑1 (MQ=255)
                   tacccgccCTGTTTGGTGGCCAGCCATACCTGCCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGt                                                                       <  2:4043439/90‑1 (MQ=255)
                   tAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGt                                                                       <  1:2119502/93‑1 (MQ=255)
                   tAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGt                                                                       <  2:483734/93‑1 (MQ=255)
                    ggcccccCTCTGTGGTTACCAGCATTGCCTGGCGCAGCGGGTGCTGGCGCTTGATAATCATTTTGCTGCCTCTCTCAAAGGTAATGGTCAgga                                                                      <  2:451729/92‑3 (MQ=255)
                    cgccgccCTTTTTGTTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTa                                                                      <  1:3626062/92‑1 (MQ=255)
                    aGCCGCCCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTa                                                                      >  1:4644789/1‑93 (MQ=255)
                     gccgccCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAc                                                                     <  1:1752662/93‑1 (MQ=255)
                        gccCTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAcgcc                                                                  <  1:454359/93‑1 (MQ=255)
                         cccTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAcgccg                                                                 >  2:135147/1‑93 (MQ=255)
                         cccTGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTAcgccg                                                                 >  2:1593948/1‑93 (MQ=255)
                            tGTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGccgccg                                                              >  2:4239391/1‑93 (MQ=255)
                             gTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGt                                                             >  2:211723/1‑93 (MQ=255)
                             gTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGt                                                             <  1:1988551/93‑1 (MQ=255)
                             gTTTGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGAGAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGt                                                             >  1:3042636/1‑93 (MQ=255)
                             gTTTGGTTCCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGt                                                             <  1:2218112/93‑1 (MQ=255)
                              tttGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGtt                                                            >  1:892682/1‑93 (MQ=255)
                              tttGGTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGtt                                                            >  1:1760160/1‑93 (MQ=255)
                                 ggTTGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGAt                                                         >  1:1189065/1‑93 (MQ=255)
                                  gTTGCCAGCCATCCCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGAtt                                                        <  1:4663235/93‑1 (MQ=255)
                                  gTTCCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTACTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGAtt                                                        <  1:2512951/93‑1 (MQ=255)
                                   ttGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGAttt                                                       <  2:2371240/93‑1 (MQ=255)
                                   ttGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGAttt                                                       <  1:1024537/93‑1 (MQ=255)
                                   gtGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGAttt                                                       <  2:2869594/92‑1 (MQ=255)
                                    tGCCAGCCATCCCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTc                                                      <  2:4483244/93‑1 (MQ=255)
                                    tGCCAGCCATACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTc                                                      <  1:333139/93‑1 (MQ=255)
                                     gccagccaTACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCg                                                     >  2:3629935/1‑93 (MQ=255)
                                       cagccaTACCTGGCGCAGCGGCTCCTGTCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCa                                                   <  2:4651105/93‑1 (MQ=255)
                                       cagccaTACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCa                                                   <  1:109415/93‑1 (MQ=255)
                                        agccaTACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAg                                                  >  2:4307755/1‑93 (MQ=255)
                                        agccaTACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAg                                                  <  2:719670/93‑1 (MQ=255)
                                        agccaTACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAg                                                  <  1:1045131/93‑1 (MQ=255)
                                             tACCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGCAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGat                                             >  2:304412/1‑93 (MQ=255)
                                              aCCTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGata                                            <  2:2572922/93‑1 (MQ=255)
                                               ccTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGatat                                           <  2:2566497/93‑1 (MQ=255)
                                               ccTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGatat                                           <  1:426659/93‑1 (MQ=255)
                                               ccTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGatat                                           <  1:4501115/93‑1 (MQ=255)
                                               ccTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGatat                                           <  1:4493043/93‑1 (MQ=255)
                                                cTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATc                                          <  1:1855586/93‑1 (MQ=255)
                                                cTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATc                                          >  2:223835/1‑93 (MQ=255)
                                                cTGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATc                                          >  2:681296/1‑93 (MQ=255)
                                                 tGGCGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCg                                         <  1:2316791/93‑1 (MQ=255)
                                                           gCTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCAt                               <  2:668502/93‑1 (MQ=255)
                                                           gCTCCTGGCGGTTGATAATGATCTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCAt                               <  2:1565571/93‑1 (MQ=255)
                                                            cTCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATc                              >  2:2539585/1‑93 (MQ=255)
                                                             tCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATcc                             >  1:131705/1‑93 (MQ=255)
                                                             tCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATcc                             <  1:634091/93‑1 (MQ=255)
                                                             tCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGACGTTGATTTCGCAGTCGATATCGCTGTCGCCATcc                             >  1:1553012/1‑93 (MQ=255)
                                                             tCCTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGCAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATcc                             >  1:4069240/1‑93 (MQ=255)
                                                              ccTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATccc                            <  1:4138091/93‑1 (MQ=255)
                                                               cTGGCGGTTTATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCa                           <  2:1118672/93‑1 (MQ=255)
                                                               cTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCa                           >  1:335729/1‑93 (MQ=255)
                                                               cTGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCa                           >  2:1206070/1‑93 (MQ=255)
                                                                tGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAg                          >  2:1984149/1‑93 (MQ=255)
                                                                tGGCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAg                          >  2:2467296/1‑93 (MQ=255)
                                                                tGGCGGTTGATAATGATTTGGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAg                          <  1:3477582/93‑1 (MQ=255)
                                                                 tgCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgt                         <  1:2697319/92‑1 (MQ=255)
                                                                  gCGGTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtc                        <  1:3223600/93‑1 (MQ=255)
                                                                   gggTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtca                       <  2:3414151/92‑2 (MQ=255)
                                                                    ggTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcat                      >  1:3821735/1‑91 (MQ=255)
                                                                     gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcatc                     >  1:2249849/1‑93 (MQ=255)
                                                                     gTTGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAgtcatc                     <  1:2885126/93‑1 (MQ=255)
                                                                      ttGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATcc                    <  2:1488558/93‑1 (MQ=255)
                                                                      ttGATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATcc                    <  2:4677206/93‑1 (MQ=255)
                                                                        gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg                  <  1:2429563/93‑1 (MQ=255)
                                                                        gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg                  >  2:4139664/1‑93 (MQ=255)
                                                                        gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg                  >  2:396518/1‑93 (MQ=255)
                                                                        gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg                  >  1:3538467/1‑93 (MQ=255)
                                                                        gATAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAg                  <  2:1875354/93‑1 (MQ=255)
                                                                         aTAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAgg                 <  2:1895026/93‑1 (MQ=255)
                                                                          tAATGATTTTTCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGc                <  2:761806/93‑1 (MQ=255)
                                                                          tAATGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGc                >  2:3454508/1‑93 (MQ=255)
                                                                           aaTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCg               >  1:4320414/1‑93 (MQ=255)
                                                                            aTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGt              >  2:2684227/1‑93 (MQ=255)
                                                                            aTGATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGt              <  2:2181508/93‑1 (MQ=255)
                                                                              gATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttc            >  1:4015044/1‑93 (MQ=255)
                                                                              gATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttc            <  2:4257420/93‑1 (MQ=255)
                                                                              gATTTTGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGttc            <  1:4613747/93‑1 (MQ=255)
                                                                                ttttGCTGCCACTCTCAAAGGGAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCACGCGttcct          >  2:4087310/1‑91 (MQ=255)
                                                                                  ttGCTGCCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCa        >  1:907098/1‑93 (MQ=255)
                                                                                    gctgcCACTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCATCCAGGCGTTCTTCAAt      >  1:4586159/1‑93 (MQ=255)
                                                                                           |                                                                                         
GCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCATACCTGGTGCAGCGGCTCCTGGCGGTTGATAATGATTTTGCTGCCATTCTCAAAGGTAATGGTCAGTACGCCGCCGTTGATTTCGCAGTCGATATCGCTGTCGCCATCCCAGTCGTCCAGGCGTTCTTCAATGGTC  >  NC_000913/3991448‑3991628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: