Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 436,659 T→C E258G (GAG→GGG)  yajO ← putative NAD(P)H‑dependent xylose reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913436,6590TC99.4% 500.9 / ‑4.6 160E258G (GAG→GGG) yajOputative NAD(P)H‑dependent xylose reductase
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (108/51);  total (109/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.81e-01

Only 100 of 172 total aligned reads displayed.

GTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACGCCC  >  NC_000913/436569‑436748
                                                                                          |                                                                                         
gtCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTccccacccca                                                                                         >  1:346255/1‑93 (MQ=255)
gtCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCGCCcca                                                                                         <  1:1435213/93‑1 (MQ=255)
 tCGCCACCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCccat                                                                                        <  2:1468694/93‑1 (MQ=255)
  cGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCccatc                                                                                       <  1:3266454/93‑1 (MQ=255)
   gCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCCCCccatca                                                                                      <  1:545844/93‑1 (MQ=255)
   gCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCccatca                                                                                      >  1:2713572/1‑93 (MQ=255)
    cccccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCCTTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAg                                                                                     >  1:2110173/1‑93 (MQ=255)
     ccccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGa                                                                                    <  1:578106/93‑1 (MQ=255)
     ccccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGa                                                                                    >  2:1244300/1‑93 (MQ=255)
      cccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGac                                                                                   <  2:700795/93‑1 (MQ=255)
      cccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGac                                                                                   >  1:4327430/1‑93 (MQ=255)
      cccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGac                                                                                   >  2:1031154/1‑93 (MQ=255)
       ccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGaca                                                                                  >  2:4524598/1‑93 (MQ=255)
         aGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACAcc                                                                                >  1:305941/1‑93 (MQ=255)
         aGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACAcc                                                                                <  2:4232571/93‑1 (MQ=255)
          gTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCa                                                                               >  2:49569/1‑93 (MQ=255)
          gTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCa                                                                               <  1:4169162/93‑1 (MQ=255)
             cttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTc                                                                            >  2:35768/1‑93 (MQ=255)
              ttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCg                                                                           >  2:966081/1‑93 (MQ=255)
               tcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGt                                                                          <  2:2287295/93‑1 (MQ=255)
                cACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTg                                                                         <  1:2637024/93‑1 (MQ=255)
                 aCTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGc                                                                        <  2:879665/93‑1 (MQ=255)
                 aCTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGc                                                                        >  1:1095482/1‑93 (MQ=255)
                 aCTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGc                                                                        >  1:1038591/1‑93 (MQ=255)
                  cTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCg                                                                       >  1:140835/1‑93 (MQ=255)
                   tGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCgg                                                                      >  1:840195/1‑93 (MQ=255)
                    gACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGt                                                                     >  1:2941881/1‑93 (MQ=255)
                      cGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAg                                                                   <  2:2670575/93‑1 (MQ=255)
                        ccTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGtt                                                                 >  1:2819136/1‑93 (MQ=255)
                         cTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGttt                                                                >  1:4276591/1‑93 (MQ=255)
                         cTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGttt                                                                >  2:289663/1‑93 (MQ=255)
                          tGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTtc                                                               >  2:855024/1‑93 (MQ=255)
                          tGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTtc                                                               >  1:4079529/1‑93 (MQ=255)
                             tAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTcc                                                            >  2:1547821/1‑93 (MQ=255)
                             tAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTcc                                                            <  2:2390268/93‑1 (MQ=255)
                             tAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTcc                                                            <  1:4576202/93‑1 (MQ=255)
                              aaCCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTccc                                                           >  2:716590/1‑93 (MQ=255)
                               aCCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTcccc                                                          >  2:757040/1‑93 (MQ=255)
                                ccGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCa                                                         <  2:90236/93‑1 (MQ=255)
                                  gCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACg                                                       <  2:1337848/93‑1 (MQ=255)
                                  gCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACg                                                       >  1:4561005/1‑93 (MQ=255)
                                   ctctGCTATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACgg                                                      <  1:1643711/93‑1 (MQ=255)
                                    tctGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGa                                                     >  1:2790934/1‑93 (MQ=255)
                                    tctGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGa                                                     >  1:195416/1‑93 (MQ=255)
                                     ctGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGAc                                                    <  2:3861803/93‑1 (MQ=255)
                                      tGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGAcg                                                   >  2:1073954/1‑93 (MQ=255)
                                        cGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGAcgcg                                                 >  1:73955/1‑93 (MQ=255)
                                        cGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGAcgcg                                                 <  1:889270/93‑1 (MQ=255)
                                          aTCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTc                                               >  1:4468520/1‑93 (MQ=255)
                                          aTCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTc                                               >  2:769335/1‑93 (MQ=255)
                                           tCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCGGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCa                                              <  2:3094101/93‑1 (MQ=255)
                                           tCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCa                                              >  2:2591193/1‑93 (MQ=255)
                                           tCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCa                                              >  1:2286585/1‑93 (MQ=255)
                                             tGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGa                                            >  1:2421981/1‑93 (MQ=255)
                                               cgcgTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACg                                          >  2:188577/1‑93 (MQ=255)
                                                  gTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGcc                                       <  1:3602443/93‑1 (MQ=255)
                                                  gTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGcc                                       >  1:3055156/1‑93 (MQ=255)
                                                   tCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGccc                                      >  1:545388/1‑93 (MQ=255)
                                                   tCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGccc                                      >  2:2251359/1‑93 (MQ=255)
                                                    cATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGcccc                                     <  2:1845480/93‑1 (MQ=255)
                                                    cATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGcccc                                     <  2:4404828/93‑1 (MQ=255)
                                                    cATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGcccc                                     >  2:1300968/1‑93 (MQ=255)
                                                     aTTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCt                                    <  2:2808018/93‑1 (MQ=255)
                                                      ttttCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCtt                                   >  2:71544/1‑93 (MQ=255)
                                                      ttttCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCtt                                   >  2:4427301/1‑93 (MQ=255)
                                                       tttCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTg                                  >  1:3737635/1‑93 (MQ=255)
                                                        ttCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGc                                 >  2:3313720/1‑93 (MQ=255)
                                                         tCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGcc                                <  1:3367962/93‑1 (MQ=255)
                                                         tCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGcc                                >  2:2408417/1‑93 (MQ=255)
                                                          cATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCa                               >  1:2002636/1‑93 (MQ=255)
                                                           aTCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAg                              >  1:2561172/1‑93 (MQ=255)
                                                            tCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGc                             <  2:52071/93‑1 (MQ=255)
                                                             cGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCg                            <  2:4408361/93‑1 (MQ=255)
                                                              gCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACCCCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGCCAGACGGCCCCTTGCCAGCgg                           <  2:2985373/93‑1 (MQ=255)
                                                              gCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCgg                           >  1:399108/1‑93 (MQ=255)
                                                               ctttctttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCggg                          >  2:421823/1‑93 (MQ=255)
                                                                 ttctttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCt                        >  1:2488796/1‑93 (MQ=255)
                                                                  tctttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTc                       >  1:228152/1‑93 (MQ=255)
                                                                   ctttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTcc                      <  2:2119175/93‑1 (MQ=255)
                                                                    tttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCa                     <  2:2230505/93‑1 (MQ=255)
                                                                    tttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCa                     >  1:987706/1‑93 (MQ=255)
                                                                      tataGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATg                   >  2:1586155/1‑93 (MQ=255)
                                                                      tataGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGCCAGACGGTCCCTTGCCAGCGGGCTCCATg                   >  2:4131271/1‑93 (MQ=255)
                                                                       ataGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATgg                  <  1:4125401/93‑1 (MQ=255)
                                                                       ataGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATgg                  >  1:2267042/1‑93 (MQ=255)
                                                                         agagATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGaa                <  2:307076/93‑1 (MQ=255)
                                                                          gagaTTTTTCCCCGCCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAAt               <  1:1365984/93‑1 (MQ=255)
                                                                          gagaTTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAAt               >  2:3613175/1‑93 (MQ=255)
                                                                             aTTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAc            <  2:2018263/93‑1 (MQ=255)
                                                                              tttttCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAcc           >  2:1416300/1‑93 (MQ=255)
                                                                              tttttCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAcc           <  1:3693249/93‑1 (MQ=255)
                                                                              tttttCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAcc           >  2:1334385/1‑93 (MQ=255)
                                                                              tttttCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAcc           >  1:1566845/1‑93 (MQ=255)
                                                                              tttttCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAcc           >  1:4642194/1‑93 (MQ=255)
                                                                                  tCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCa       >  2:2836804/1‑93 (MQ=255)
                                                                                    cccACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACg     >  2:1704028/1‑93 (MQ=255)
                                                                                     ccACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACGc    >  1:3810602/1‑93 (MQ=255)
                                                                                     ccACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACGc    >  1:4250577/1‑93 (MQ=255)
                                                                                       aCCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACGccc  >  1:3705326/1‑93 (MQ=255)
                                                                                       aCCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACGccc  >  2:4204769/1‑93 (MQ=255)
                                                                                          |                                                                                         
GTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACGCCC  >  NC_000913/436569‑436748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: