BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,097,623	T→C	M162V (ATG→GTG)	rhaT ←	RhaT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,097,623	0	T	C	100.0%	667.7 / NA	211	M162V (ATG→GTG)	rhaT	RhaT
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (123/88); total (123/88)

Only 100 of 216 total aligned reads displayed.

TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT  >  NC_000913/4097533‑4097712

tCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCt                                                                                         <  2:1755743/93‑1 (MQ=255)

 cGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCtt                                                                                        <  1:2765438/93‑1 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTg                                                                                       >  1:4054931/1‑93 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTg                                                                                       >  1:3651631/1‑93 (MQ=255)

  gCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTg                                                                                       <  1:900781/93‑1 (MQ=255)

   cAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTgc                                                                                      <  2:4174722/93‑1 (MQ=255)

    aaaGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTgcg                                                                                     >  2:4017732/1‑93 (MQ=255)

      aGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGct                                                                                   <  1:3018987/93‑1 (MQ=255)

       ggACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGctc                                                                                  >  1:3759052/1‑93 (MQ=255)

         aCATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCtt                                                                                >  2:293619/1‑93 (MQ=255)

         aCATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCtt                                                                                >  2:600981/1‑93 (MQ=255)

          cATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCttt                                                                               <  2:2451569/93‑1 (MQ=255)

          cATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCttt                                                                               <  1:2268085/93‑1 (MQ=255)

           aTCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTc                                                                              <  2:4419794/93‑1 (MQ=255)

           aTCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTc                                                                              >  1:4411956/1‑93 (MQ=255)

            tCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCa                                                                             >  1:81076/1‑93 (MQ=255)

            tCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCa                                                                             >  2:1704990/1‑93 (MQ=255)

             cccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCaa                                                                            <  1:427548/93‑1 (MQ=255)

             cccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCaa                                                                            <  2:696783/93‑1 (MQ=255)

              ccGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAAc                                                                           <  1:2878252/93‑1 (MQ=255)

               cGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACt                                                                          <  2:3027519/93‑1 (MQ=255)

                  cAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGcc                                                                       <  2:1760968/93‑1 (MQ=255)

                   agagAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGccc                                                                      >  1:3701010/1‑93 (MQ=255)

                   agagAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGccc                                                                      <  2:4658206/93‑1 (MQ=255)

                    gagaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCg                                                                     >  2:1814235/1‑93 (MQ=255)

                    gagaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCg                                                                     >  1:672546/1‑93 (MQ=255)

                    gagaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCg                                                                     >  2:1305968/1‑93 (MQ=255)

                      gaAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGgc                                                                   >  1:2326670/1‑93 (MQ=255)

                       aaaaTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGgcg                                                                  >  2:1480390/1‑93 (MQ=255)

                         aaTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGcgcg                                                                >  1:2715917/1‑93 (MQ=255)

                         aaTGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGcgcg                                                                >  1:622277/1‑93 (MQ=255)

                           tGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAg                                                              <  1:20386/93‑1 (MQ=255)

                            gCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGt                                                             <  1:3797698/93‑1 (MQ=255)

                            cccGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGt                                                             <  2:815033/92‑1 (MQ=255)

                              cGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTa                                                           <  1:3254736/93‑1 (MQ=255)

                               gCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAc                                                          >  2:2615832/1‑93 (MQ=255)

                               gCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAc                                                          >  1:1109485/1‑93 (MQ=255)

                               gCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTAc                                                          >  2:2859114/1‑93 (MQ=255)

                                 ccaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACaa                                                        <  1:989115/92‑1 (MQ=255)

                                 acaTCTCCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACaa                                                        <  1:4548502/93‑1 (MQ=255)

                                 acaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGGCCACCTTGCGCTCTTTCAACTGCTCGGCGCGAGTTACaa                                                        >  2:3652118/1‑93 (MQ=255)

                                 acaTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACaa                                                        >  2:2500259/1‑93 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       <  2:4567993/93‑1 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       >  1:3508808/1‑93 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       >  2:1039788/1‑93 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       >  2:2224787/1‑93 (MQ=255)

                                  caTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAAt                                                       <  1:3175028/93‑1 (MQ=255)

                                   aTCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATc                                                      >  2:137064/1‑93 (MQ=255)

                                       ccGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTa                                                  >  1:2218482/1‑93 (MQ=255)

                                       ccGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTa                                                  <  1:1862571/93‑1 (MQ=255)

                                       ccGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTa                                                  <  1:1669465/93‑1 (MQ=255)

                                         gCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACg                                                >  1:2884395/1‑93 (MQ=255)

                                            aGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCa                                             >  1:1452708/1‑93 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            <  1:3606256/93‑1 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            >  1:4673323/1‑93 (MQ=255)

                                             gCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCaa                                            >  1:4356104/1‑93 (MQ=255)

                                               aCCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATc                                          <  1:1691982/93‑1 (MQ=255)

                                                ccAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCa                                         >  2:926654/1‑93 (MQ=255)

                                                   gCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcg                                      >  2:1891513/1‑93 (MQ=255)

                                                    cccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcgc                                     >  1:2914932/1‑93 (MQ=255)

                                                    cccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAgcgc                                     >  1:3294078/1‑93 (MQ=255)

                                                     ccTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcc                                    >  1:1195203/1‑93 (MQ=255)

                                                      cTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcca                                   <  2:3197901/93‑1 (MQ=255)

                                                      cTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGcca                                   >  2:3452908/1‑93 (MQ=255)

                                                        tttttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGccacc                                 >  2:42386/1‑93 (MQ=255)

                                                           ttCAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGa                              <  2:2292343/93‑1 (MQ=255)

                                                            tCAGATTGACCTCTTCGGCTTTAATGCCCTCCTTGCGCTCCTTCAACTGCGCGGTGCGAGTTTCAACCCCTACGCCAATCAGCGCCACCAGaa                             <  2:3969738/93‑1 (MQ=255)

                                                             cAGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGAGCCACCACAAc                            >  2:35693/1‑93 (MQ=255)

                                                              aGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACg                           >  2:3227128/1‑93 (MQ=255)

                                                              aGATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACg                           >  1:2327961/1‑93 (MQ=255)

                                                               gATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGc                          >  1:1323137/1‑93 (MQ=255)

                                                               gATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGc                          >  2:3704554/1‑93 (MQ=255)

                                                               gATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGc                          >  1:1910243/1‑93 (MQ=255)

                                                               gATTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGc                          >  1:2067077/1‑93 (MQ=255)

                                                                aTTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGcc                         >  2:1031406/1‑93 (MQ=255)

                                                                aTTGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGcc                         <  2:1638909/93‑1 (MQ=255)

                                                                 ttGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCg                        <  1:2445401/93‑1 (MQ=255)

                                                                  tGAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGa                       <  1:3949768/93‑1 (MQ=255)

                                                                   gAACTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAg                      >  1:4083477/1‑93 (MQ=255)

                                                                     aCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAAGGCCGAGCa                    >  2:1532729/1‑93 (MQ=255)

                                                                     aCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCa                    >  2:2417747/1‑93 (MQ=255)

                                                                     aCTCTTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCa                    >  2:3604922/1‑93 (MQ=255)

                                                                      ctctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCaa                   >  2:1149354/1‑93 (MQ=255)

                                                                      ctctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCaa                   >  1:1920568/1‑93 (MQ=255)

                                                                       tctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAc                  >  2:3069882/1‑93 (MQ=255)

                                                                       tctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAAc                  <  1:1502640/93‑1 (MQ=255)

                                                                        ctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACg                 >  2:2738915/1‑93 (MQ=255)

                                                                        ctTCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACg                 >  2:824406/1‑93 (MQ=255)

                                                                         ttCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGt                <  1:2537343/93‑1 (MQ=255)

                                                                         ttCGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGt                >  1:2152671/1‑93 (MQ=255)

                                                                           cGGCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCa              <  2:2962257/93‑1 (MQ=255)

                                                                            ggCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAt             <  1:3455897/93‑1 (MQ=255)

                                                                            ggCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAt             <  1:3633524/93‑1 (MQ=255)

                                                                            ggCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCAt             >  2:1991475/1‑93 (MQ=255)

                                                                             gCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGTGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATg            >  2:4547962/1‑93 (MQ=255)

                                                                             gCTTTAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATg            >  2:3272381/1‑93 (MQ=255)

                                                                               tttAATGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCg          >  1:1313824/1‑93 (MQ=255)

                                                                                    tGCCCACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGc     <  1:2824072/93‑1 (MQ=255)

                                                                                       ccACCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCtt  <  1:4014762/93‑1 (MQ=255)

                                                                                       ccACCTGGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCtt  <  2:2107995/93‑1 (MQ=255)

TCGCAAAGGACATCCCGGCAGAGAAAATGCCGCACATCACCGCCAGCACCAGCCCTTTTTTCAGATTGAACTCTTCGGCTTTAATGCCCATCTTGCGCTCTTTCAACTGCCCGGCGCGAGTTACAATCCCTACGCCAATCAGCGCCACCAGAACGCCGAGCAACGTCATGCGTCCGCCTT  >  NC_000913/4097533‑4097712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`