BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,121,069	C→T	G323D (GGC→GAC)	cytR ←	CytR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,121,069	0	C	T	100.0%	846.4 / NA	241	G323D (GGC→GAC)	cytR	CytR
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (134/107); total (134/107)

Only 100 of 248 total aligned reads displayed.

TTGACCAGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGCCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGATGGTTGTC  >  NC_000913/4120979‑4121158

 tGACCAGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCAc                                                                                        <  2:1405333/93‑1 (MQ=255)

 tGACCAGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCAc                                                                                        >  1:3339213/1‑93 (MQ=255)

 tGACCAGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCAc                                                                                        <  2:3878102/93‑1 (MQ=255)

  gACCAGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACt                                                                                       >  2:4661698/1‑93 (MQ=255)

  gACCAGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACt                                                                                       <  1:3082883/93‑1 (MQ=255)

    ccAGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGc                                                                                     <  1:1521590/93‑1 (MQ=255)

    ccAGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGc                                                                                     <  2:1514648/93‑1 (MQ=255)

      aGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCa                                                                                   >  1:4058438/1‑93 (MQ=255)

       gTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCaa                                                                                  <  2:4289156/93‑1 (MQ=255)

         cACGGCATTCTTAAAGGTTTACTGTAAGTTAGCGCGCGTGTTGATCCCCGGATGATAAGTTGGCAGTCCATTAACCGAGAGTCACTGCCAACg                                                                                <  2:2307312/93‑1 (MQ=255)

          aCGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACgt                                                                               <  1:2062160/93‑1 (MQ=255)

           cGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACgtg                                                                              <  2:3383839/93‑1 (MQ=255)

           cGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACgtg                                                                              <  1:2739723/93‑1 (MQ=255)

            ggCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACgtgt                                                                             >  1:1097881/1‑93 (MQ=255)

            ggCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACgtgt                                                                             >  2:2063021/1‑93 (MQ=255)

            ggCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACgtgt                                                                             >  1:1931831/1‑93 (MQ=255)

                gTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGcc                                                                         >  2:1100656/1‑93 (MQ=255)

                 ttttAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAAGCACTGCCAACGTGTTGccc                                                                        >  2:3046701/3‑93 (MQ=255)

                  cTTAAAGTTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGcccc                                                                       <  2:1743474/93‑1 (MQ=255)

                   ttAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCt                                                                      >  2:3548731/1‑93 (MQ=255)

                   ttAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCt                                                                      >  2:3832877/1‑93 (MQ=255)

                    tAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTg                                                                     >  2:4036918/1‑93 (MQ=255)

                      aaGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCa                                                                   <  1:506598/93‑1 (MQ=255)

                      aaGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCa                                                                   >  2:2549348/1‑93 (MQ=255)

                      aaGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCa                                                                   <  2:1457275/93‑1 (MQ=255)

                       aGGTTTACTTTAAGGTAACGCGTGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCAt                                                                  <  2:2051879/93‑1 (MQ=255)

                        ggTTTACTTTAAGTTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCAtt                                                                 <  2:2814246/93‑1 (MQ=255)

                        ggTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCAtt                                                                 >  1:4287048/1‑93 (MQ=255)

                             aCTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATc                                                            <  1:2501647/93‑1 (MQ=255)

                              cTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCa                                                           >  1:2141106/1‑93 (MQ=255)

                               tttAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCaa                                                          <  2:704812/93‑1 (MQ=255)

                               tttAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCaa                                                          >  2:1022373/1‑93 (MQ=255)

                               tttAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCaa                                                          <  1:1147097/93‑1 (MQ=255)

                               tttAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCaa                                                          <  1:1644106/93‑1 (MQ=255)

                               tttAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGATCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCaa                                                          >  2:4166733/1‑93 (MQ=255)

                                ttAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAg                                                         >  2:4369312/1‑93 (MQ=255)

                                ttAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAg                                                         >  2:1613179/1‑93 (MQ=255)

                                   aGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCaa                                                      >  2:4630974/1‑93 (MQ=255)

                                   aGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCaa                                                      <  2:3368108/93‑1 (MQ=255)

                                   aGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCaa                                                      >  2:1208400/1‑93 (MQ=255)

                                     gTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATa                                                    <  2:2970844/93‑1 (MQ=255)

                                     gTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATa                                                    >  2:1950618/1‑93 (MQ=255)

                                      tAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATaa                                                   <  1:3242949/93‑1 (MQ=255)

                                       aaCGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAAc                                                  >  1:2276041/1‑93 (MQ=255)

                                       aaCGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAAc                                                  <  2:2691060/93‑1 (MQ=255)

                                        aCGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACa                                                 <  2:89610/93‑1 (MQ=255)

                                        aCGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACa                                                 >  2:3642368/1‑93 (MQ=255)

                                        aCGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACa                                                 <  1:4281279/93‑1 (MQ=255)

                                           cacgTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCa                                              <  1:2860970/91‑1 (MQ=255)

                                            gcgTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCAt                                             <  2:1972534/93‑1 (MQ=255)

                                             ctttttGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTCGATCAAGCAATAACAGCATa                                            <  2:4513196/89‑1 (MQ=255)

                                              gtgtTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAg                                           >  1:2188330/1‑93 (MQ=255)

                                              gtgtTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAg                                           >  1:137521/1‑93 (MQ=255)

                                               tgtTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGc                                          >  1:3946164/1‑93 (MQ=255)

                                               tgtTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGc                                          >  1:4481523/1‑93 (MQ=255)

                                                gtTGACCCCCGGATGATAGGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAAGAACAGCATAGCt                                         <  2:4649566/93‑1 (MQ=255)

                                                 ttGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCtt                                        >  1:541089/1‑93 (MQ=255)

                                                 ttGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCtt                                        >  2:846397/1‑93 (MQ=255)

                                                  tGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTc                                       <  2:3085896/93‑1 (MQ=255)

                                                   gATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTcc                                      >  1:2018310/1‑93 (MQ=255)

                                                     tCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCccg                                    >  2:3261610/1‑93 (MQ=255)

                                                         cGGATGATAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCccgaccg                                >  2:3688720/1‑93 (MQ=255)

                                                            atgatAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGAtt                             <  2:434577/93‑1 (MQ=255)

                                                             tgatAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGAttt                            <  1:70430/93‑1 (MQ=255)

                                                             tgatAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGAttt                            >  2:2942918/1‑93 (MQ=255)

                                                             tgatAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGAttt                            >  2:3598702/1‑93 (MQ=255)

                                                             tgatAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGAttt                            >  1:2917156/1‑93 (MQ=255)

                                                             agatAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGAttt                            <  2:1171103/92‑1 (MQ=255)

                                                              gatAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTc                           <  1:4017611/93‑1 (MQ=255)

                                                               atAAGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGTCCCTGCATTTGATCAAGCAATCACAGCCTAGCTTCCCGACCGATTTCg                          >  2:1865659/1‑93 (MQ=255)

                                                                 aaGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTa                        <  1:3768251/93‑1 (MQ=255)

                                                                  aGTTCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTaa                       >  1:1213251/1‑93 (MQ=255)

                                                                    ttCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAAcg                     <  1:2652799/93‑1 (MQ=255)

                                                                     tCGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAAcgc                    >  2:2189181/1‑93 (MQ=255)

                                                                      cGCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAAcgcg                   >  2:3286498/1‑93 (MQ=255)

                                                                       gCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCgg                  >  1:2595241/1‑93 (MQ=255)

                                                                       gCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCgg                  >  1:2406009/1‑93 (MQ=255)

                                                                       gCAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCgg                  >  2:636783/1‑93 (MQ=255)

                                                                        cAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGc                 >  2:1792166/1‑93 (MQ=255)

                                                                        cAGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGc                 <  2:1264266/93‑1 (MQ=255)

                                                                         aGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCt                >  1:388920/1‑93 (MQ=255)

                                                                         aGTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCt                <  2:3418300/93‑1 (MQ=255)

                                                                          gTCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTg               >  1:3465981/1‑93 (MQ=255)

                                                                           tCCATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTgc              <  2:2732890/93‑1 (MQ=255)

                                                                             cATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTgcgc            >  2:2122397/1‑93 (MQ=255)

                                                                             cATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTgcgc            >  2:1892553/1‑93 (MQ=255)

                                                                             cATTAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTgcgc            <  1:3838789/93‑1 (MQ=255)

                                                                               ttAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGa          <  2:2324665/93‑1 (MQ=255)

                                                                               ttAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGa          <  1:2765735/93‑1 (MQ=255)

                                                                               ttAAACGAGAGTCACTGCCAACGCGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGa          >  1:3096489/1‑93 (MQ=255)

                                                                                tAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGAt         <  1:3426686/93‑1 (MQ=255)

                                                                                tAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGAt         >  1:786431/1‑93 (MQ=255)

                                                                                tAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGAt         <  1:4340509/93‑1 (MQ=255)

                                                                                tAAACGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTGCGTAACGCGGCTGCGCGAt         <  2:4562058/93‑1 (MQ=255)

                                                                                 aaaCGAGAGTCACTGCCAACGTGTTGGCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGATg        >  1:1699608/1‑93 (MQ=255)

                                                                                  aaCGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGATgg       <  2:505435/93‑1 (MQ=255)

                                                                                   aCGAGAGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGATGGt      <  1:919215/93‑1 (MQ=255)

                                                                                     gagaGTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGATGGTTg    >  2:4070331/1‑93 (MQ=255)

                                                                                      agagTCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGATGGTTGt   <  1:3655262/93‑1 (MQ=255)

                                                                                      agagTCACAGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGATGGTTGt   >  1:884545/1‑93 (MQ=255)

TTGACCAGTCACGGCAGTCTTAAAGGTTTACTTTAAGGTAACGCGCGTGTTGATCCCCGGATGATAAGTTCGCAGTCCATTAAACGAGAGCCACTGCCAACGTGTTGCCCCTGCATTTGATCAAGCAATAACAGCATAGCTTCCCGACCGATTTCGTAACGCGGCTGCGCGATGGTTGTC  >  NC_000913/4120979‑4121158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`