Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,186,157 C→T A1077V (GCA→GTA)  rpoC → RNA polymerase beta prime subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,186,1570CT99.6% 889.9 / NA 255A1077V (GCA→GTA) rpoCRNA polymerase beta prime subunit
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (123/131);  minor base G (1/0);  total (124/131)
Fisher's exact test for biased strand distribution p-value = 4.86e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 263 total aligned reads displayed.

CGCGTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTAAAGCGATTG  >  NC_000913/4186067‑4186246
                                                                                          |                                                                                         
cgcgTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTAc                                                                                         <  1:4049704/93‑1 (MQ=255)
cgcgTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTAc                                                                                         >  2:3137124/1‑93 (MQ=255)
 gcgTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTGCGCCGAACGTACCCCCGGGGGTAAAGATCTGTGTCTGGTAcg                                                                                        >  2:3187509/1‑92 (MQ=255)
 gcgTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACt                                                                                        <  1:3252912/93‑1 (MQ=255)
 gcgTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACt                                                                                        >  1:1195698/1‑93 (MQ=255)
 gcgTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACt                                                                                        <  2:1753379/93‑1 (MQ=255)
 gcgTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACt                                                                                        <  2:1541579/93‑1 (MQ=255)
 gcgTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGGGGTTCTTGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTTCGTCCGGGACt                                                                                        >  2:4115309/1‑93 (MQ=255)
   gTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGa                                                                                      >  2:3660148/1‑93 (MQ=255)
      aGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGaaaa                                                                                   >  1:1337365/1‑93 (MQ=255)
      aGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGaaaa                                                                                   <  1:1728777/93‑1 (MQ=255)
      aGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGaaaa                                                                                   <  2:2000678/93‑1 (MQ=255)
      aGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGaaaa                                                                                   <  1:3598959/93‑1 (MQ=255)
       gACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAAt                                                                                  >  1:609307/1‑93 (MQ=255)
          cgacgaACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGt                                                                               <  1:3426289/93‑1 (MQ=255)
          cgacgaACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGt                                                                               >  1:1989355/1‑93 (MQ=255)
           gacgaAGTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGtt                                                                              <  1:18875/93‑1 (MQ=255)
           gacgaACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGtt                                                                              <  2:4414503/93‑1 (MQ=255)
             cgaACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGa                                                                            >  2:1919304/1‑93 (MQ=255)
             cgaACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGa                                                                            <  1:3413979/93‑1 (MQ=255)
              gaACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGAt                                                                           <  2:3850033/93‑1 (MQ=255)
              gaACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGAt                                                                           >  2:192252/1‑93 (MQ=255)
               aaCTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATg                                                                          >  1:2520799/1‑93 (MQ=255)
               aaCTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATg                                                                          <  1:269904/93‑1 (MQ=255)
               aaCTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATg                                                                          >  1:319435/1‑93 (MQ=255)
                 cTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCt                                                                        <  1:917925/93‑1 (MQ=255)
                  tGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTc                                                                       <  1:1178140/93‑1 (MQ=255)
                   gACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCa                                                                      <  2:3251059/93‑1 (MQ=255)
                     ccGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAgg                                                                    >  2:3746044/1‑93 (MQ=255)
                     ccGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAgg                                                                    >  2:148730/1‑93 (MQ=255)
                       ggTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGt                                                                  <  1:1138064/93‑1 (MQ=255)
                       ggTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGt                                                                  >  2:2393889/1‑93 (MQ=255)
                       ggTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGt                                                                  >  1:53433/1‑93 (MQ=255)
                       ggTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGt                                                                  >  2:633939/1‑93 (MQ=255)
                        gtctgtctTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTa                                                                 <  1:3506392/93‑1 (MQ=255)
                        gtctgtctTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTa                                                                 >  1:2435773/1‑93 (MQ=255)
                         tctgtctTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTaa                                                                >  2:4060856/1‑93 (MQ=255)
                          ctgtctTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAac                                                               <  2:134644/93‑1 (MQ=255)
                            gtctTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAacga                                                             >  2:109220/1‑93 (MQ=255)
                            gtctTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAacga                                                             >  1:1968533/1‑93 (MQ=255)
                               ttCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGt                                                          <  2:2495043/93‑1 (MQ=255)
                                 tgctgctGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTc                                                        <  2:4212164/92‑1 (MQ=255)
                                  gCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCt                                                       >  2:1581165/1‑93 (MQ=255)
                                    tggtggTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGa                                                     >  1:3175097/1‑93 (MQ=255)
                                    tggtggTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGa                                                     >  1:3272310/1‑93 (MQ=255)
                                      gtggtTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATc                                                   <  1:3577447/93‑1 (MQ=255)
                                      gtggtTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATc                                                   <  2:206962/93‑1 (MQ=255)
                                       tggtTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATcc                                                  >  2:4643221/1‑93 (MQ=255)
                                        ggtTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATccc                                                 <  2:4261065/93‑1 (MQ=255)
                                         gtTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCa                                                <  1:3786658/93‑1 (MQ=255)
                                          ttatGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAg                                               <  1:4262696/90‑1 (MQ=255)
                                          ttCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAg                                               >  1:2967872/1‑93 (MQ=255)
                                          ttCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAg                                               <  2:2685975/93‑1 (MQ=255)
                                           tCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAgg                                              >  1:4186249/1‑93 (MQ=255)
                                            cTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGt                                             <  2:1405350/93‑1 (MQ=255)
                                              ggATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTAc                                           <  1:2770258/93‑1 (MQ=255)
                                              ggATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTAc                                           <  1:1477006/93‑1 (MQ=255)
                                               gATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTAcc                                          <  2:1686714/93‑1 (MQ=255)
                                                   ccGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGata                                      <  2:3638872/93‑1 (MQ=255)
                                                    cGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGatat                                     <  1:4676765/93‑1 (MQ=255)
                                                    cGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGatat                                     <  1:873273/93‑1 (MQ=255)
                                                    cGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGatat                                     <  1:4099212/93‑1 (MQ=255)
                                                     gCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATg                                    >  1:1393067/1‑93 (MQ=255)
                                                        gAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCa                                 <  2:3545882/93‑1 (MQ=255)
                                                        gAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCa                                 <  2:1164046/93‑1 (MQ=255)
                                                         aaCGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAg                                <  2:776463/93‑1 (MQ=255)
                                                          aCGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAgc                               >  2:1110583/1‑93 (MQ=255)
                                                           cGTACCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAgcg                              >  1:1424939/1‑93 (MQ=255)
                                                              aCCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAg                           >  1:2288567/1‑93 (MQ=255)
                                                              aCCGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAg                           <  1:3157824/93‑1 (MQ=255)
                                                               ccGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGt                          <  1:2347939/93‑1 (MQ=255)
                                                                cGCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTa                         <  1:833312/93‑1 (MQ=255)
                                                                 gCAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTAc                        >  1:4008379/1‑93 (MQ=255)
                                                                  cAGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACt                       <  1:456100/93‑1 (MQ=255)
                                                                   aGGTGGTAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACtt                      >  2:3299592/1‑93 (MQ=255)
                                                                    ggtgttAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGGAACGACGTTCTGAGCCCAGGTACCGATATGCCAGCGCAGTACTTc                     <  1:2077712/93‑1 (MQ=255)
                                                                     gtggtAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTcc                    <  1:646256/93‑1 (MQ=255)
                                                                     gtggtAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTcc                    >  2:185773/1‑93 (MQ=255)
                                                                     gtggtAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTcc                    <  1:1616808/93‑1 (MQ=255)
                                                                      tggtAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCt                   <  2:1189466/93‑1 (MQ=255)
                                                                        gtAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGc                 <  2:180171/93‑1 (MQ=255)
                                                                        gtAAAGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGc                 <  2:4507563/93‑1 (MQ=255)
                                                                          aaaGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCg               >  1:3468062/1‑93 (MQ=255)
                                                                          aaaGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCg               >  1:4426877/1‑93 (MQ=255)
                                                                          aaaGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCg               <  2:1033914/93‑1 (MQ=255)
                                                                           aaGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGAGCAGTACTTCCTGCCgg              >  1:3894961/1‑93 (MQ=255)
                                                                            aGATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCACAGTACTTCCTGCCggg             >  1:1567714/1‑93 (MQ=255)
                                                                             gATCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGt            >  2:2189562/1‑93 (MQ=255)
                                                                              aTCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTa           >  2:3028352/1‑93 (MQ=255)
                                                                              aTCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTa           >  2:3330721/1‑93 (MQ=255)
                                                                              aTCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTa           >  1:2452612/1‑93 (MQ=255)
                                                                               tCTGCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTaa          >  1:2893027/1‑93 (MQ=255)
                                                                                  gCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTAAAGc       <  1:1640629/93‑1 (MQ=255)
                                                                                  gCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTAAAGc       <  1:3738207/93‑1 (MQ=255)
                                                                                  gCGTCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGCTCTGATCCCAGGGACCGATATGCCAGCGCAGTACTTCCTGCCGGGAAAAga       >  2:2318913/1‑92 (MQ=255)
                                                                                     tCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTAAAGCGAt    <  1:2680083/93‑1 (MQ=255)
                                                                                     tCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTAAAGCGAt    <  2:695761/93‑1 (MQ=255)
                                                                                     tCCGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGAAAAGCGAt    >  2:1010287/1‑93 (MQ=255)
                                                                                       cGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTAAAGCGATTg  <  1:756939/93‑1 (MQ=255)
                                                                                       cGGTACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTAAAGCGATTg  <  1:1086017/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGCGTCAGACCGACGAACTGACCGGTCTGTCTTCGCTGGTGGTTCTGGATTCCGCAGAACGTACCGCAGGTGGTAAAGATCTGCGTCCGGCACTGAAAATCGTTGATGCTCAGGGTAACGACGTTCTGATCCCAGGTACCGATATGCCAGCGCAGTACTTCCTGCCGGGTAAAGCGATTG  >  NC_000913/4186067‑4186246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: