Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 61,392 A→G Y625H (TAT→CAT)  hepA ← putative ATP‑dependent RNA helicase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091361,3920AG98.7% 696.7 / ‑1.4 223Y625H (TAT→CAT) hepAputative ATP‑dependent RNA helicase
Reads supporting (aligned to +/- strand):  ref base A (1/2);  new base G (122/98);  total (123/100)
Fisher's exact test for biased strand distribution p-value = 5.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.72e-01

Only 100 of 230 total aligned reads displayed.

CCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGAC  >  NC_000913/61302‑61481
                                                                                          |                                                                                         
 cAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCa                                                                                        >  1:640515/1‑93 (MQ=255)
  aGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAg                                                                                       >  2:3054075/1‑93 (MQ=255)
  aGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAg                                                                                       >  2:3229808/1‑93 (MQ=255)
  aGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAg                                                                                       <  1:4254516/93‑1 (MQ=255)
  aGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAg                                                                                       <  2:3639586/93‑1 (MQ=255)
      aGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCa                                                                                   >  1:128520/1‑93 (MQ=255)
       gTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCAc                                                                                  >  2:3562303/1‑93 (MQ=255)
           aTCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGc                                                                              <  2:1952484/93‑1 (MQ=255)
           aTCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGc                                                                              >  2:3379189/1‑93 (MQ=255)
           aTCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGc                                                                              >  1:1938039/1‑93 (MQ=255)
           aTCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGc                                                                              >  1:3058697/1‑93 (MQ=255)
            tCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCa                                                                             >  1:1223085/1‑93 (MQ=255)
             cAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCAc                                                                            >  2:2980866/1‑93 (MQ=255)
             cAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCAc                                                                            <  1:785915/93‑1 (MQ=255)
             cAGATCGTTGTATACACTATCGTAAATAGTGCGTCCTGTCGGGCAGGTGTGCTCAAATTCATCCAGACCTTCGTGATGCCAGCGCACCAGCAc                                                                            <  2:1105320/93‑1 (MQ=255)
                aTCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCTAGACCTTCGTGATGCCAGCGCACCAGCACCGa                                                                         >  1:3786867/1‑93 (MQ=255)
                aTCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGa                                                                         >  2:2111555/1‑93 (MQ=255)
                aTCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGa                                                                         >  2:1279168/1‑93 (MQ=255)
                 tCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGAc                                                                        <  2:894728/93‑1 (MQ=255)
                    ttGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGa                                                                     <  1:56297/93‑1 (MQ=255)
                     tGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAg                                                                    <  2:4406411/93‑1 (MQ=255)
                     tGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGc                                                                   <  2:1927371/93‑1 (MQ=255)
                      gTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAgg                                                                   >  1:142714/1‑92 (MQ=255)
                      gTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGc                                                                   >  2:2785413/1‑93 (MQ=255)
                      gTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCCACTGAGc                                                                   >  1:393222/1‑93 (MQ=255)
                       tataCGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCg                                                                  <  2:1839594/93‑1 (MQ=255)
                         taCGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGt                                                                >  2:2560460/1‑93 (MQ=255)
                         taCGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGt                                                                >  2:4380841/1‑93 (MQ=255)
                           cGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGttt                                                              >  2:3837389/1‑93 (MQ=255)
                            gCTATCGTCAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGtttt                                                             >  2:4560956/1‑93 (MQ=255)
                            gCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGtttt                                                             <  2:3490333/93‑1 (MQ=255)
                            gCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGtttt                                                             >  1:1781236/1‑93 (MQ=255)
                               aTCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTtctc                                                          <  2:4209944/93‑1 (MQ=255)
                                 cGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCa                                                        <  1:537172/93‑1 (MQ=255)
                                   tAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGa                                                      >  1:1005702/1‑93 (MQ=255)
                                   tAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGa                                                      <  1:3453713/93‑1 (MQ=255)
                                   tAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGa                                                      <  2:4536553/93‑1 (MQ=255)
                                     aaTAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGGCCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATa                                                    >  1:2517271/1‑93 (MQ=255)
                                     aaTAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATa                                                    <  2:4051362/93‑1 (MQ=255)
                                     aaTAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATa                                                    >  2:2687769/1‑93 (MQ=255)
                                      aTAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATaa                                                   >  1:3502188/1‑93 (MQ=255)
                                       tAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAg                                                  <  2:2150887/93‑1 (MQ=255)
                                         gTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGc                                                >  2:918773/1‑93 (MQ=255)
                                         gTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGc                                                >  1:4604257/1‑93 (MQ=255)
                                         gTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGc                                                >  2:3888655/1‑93 (MQ=255)
                                         gTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGc                                                >  1:2005797/1‑93 (MQ=255)
                                          tGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGca                                               <  2:2910022/93‑1 (MQ=255)
                                          tGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGca                                               >  1:4356732/1‑93 (MQ=255)
                                          tGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGca                                               >  1:237734/1‑93 (MQ=255)
                                           gCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGcac                                              <  2:3336071/93‑1 (MQ=255)
                                            cGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGcaca                                             >  2:3452226/1‑93 (MQ=255)
                                            cGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGcaca                                             <  1:3715818/93‑1 (MQ=255)
                                             gTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACAt                                            >  1:1868430/1‑93 (MQ=255)
                                              tCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATg                                           >  2:1666775/1‑93 (MQ=255)
                                                cGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGa                                         >  2:477960/1‑93 (MQ=255)
                                                cGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGa                                         <  1:1150598/93‑1 (MQ=255)
                                                   tCGGGCAGGTGTGCTCAAATGCATCGAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCt                                      <  2:1732663/93‑1 (MQ=255)
                                                   tCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCt                                      >  2:1019942/1‑93 (MQ=255)
                                                   tCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCt                                      <  2:3756515/93‑1 (MQ=255)
                                                   tCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCt                                      <  1:4012233/93‑1 (MQ=255)
                                                    cGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTg                                     <  2:3465268/93‑1 (MQ=255)
                                                      ggCAGGTGTGCTCAAATGCATCCTGACCTTCGTGATGCCAGCGCACGAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGaa                                   >  2:3782456/1‑93 (MQ=255)
                                                      ggCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGaa                                   <  1:244563/93‑1 (MQ=255)
                                                      ggCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGaa                                   <  1:245445/93‑1 (MQ=255)
                                                       gCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAat                                  >  2:2235640/1‑93 (MQ=255)
                                                       gCAGGTCTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAat                                  >  2:3902156/1‑93 (MQ=255)
                                                        cAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAata                                 >  2:807603/1‑93 (MQ=255)
                                                        cAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAata                                 <  2:2406836/93‑1 (MQ=255)
                                                        cAGGTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAata                                 >  1:3101259/1‑93 (MQ=255)
                                                          ggTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATc                               <  2:21581/93‑1 (MQ=255)
                                                          ggTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATc                               >  1:2973992/1‑93 (MQ=255)
                                                          ggTGTGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATc                               <  1:757674/93‑1 (MQ=255)
                                                           gtgtGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCg                              <  2:3974024/93‑1 (MQ=255)
                                                           gtgtGCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCg                              >  1:1827650/1‑93 (MQ=255)
                                                            tgtgCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGt                             <  1:4442021/93‑1 (MQ=255)
                                                               gCTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTgcg                          >  2:1255937/1‑93 (MQ=255)
                                                                cTCAAATGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTgcgc                         >  1:2174818/1‑93 (MQ=255)
                                                                   aaaTGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTg                      <  1:3571721/93‑1 (MQ=255)
                                                                     aTGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGc                    >  1:106094/1‑93 (MQ=255)
                                                                     aTGCATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCCGGc                    >  2:4118292/1‑93 (MQ=255)
                                                                        cATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGa                 <  2:2028530/93‑1 (MQ=255)
                                                                        cATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGa                 <  1:1333802/93‑1 (MQ=255)
                                                                        cATCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGa                 <  1:3352364/93‑1 (MQ=255)
                                                                         aTCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGAt                >  1:3166826/1‑93 (MQ=255)
                                                                         aTCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGAt                >  2:1897648/1‑93 (MQ=255)
                                                                          tCCAGACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATa               <  2:4475189/93‑1 (MQ=255)
                                                                              gcccTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGAt           <  1:1916418/91‑1 (MQ=255)
                                                                              gACCTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGAt           <  2:4069484/93‑1 (MQ=255)
                                                                                ccTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATcc         <  2:3570284/93‑1 (MQ=255)
                                                                                 cTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCa        <  1:4140192/93‑1 (MQ=255)
                                                                                 cTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCa        <  2:1140942/93‑1 (MQ=255)
                                                                                 cTTCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCa        <  2:539269/93‑1 (MQ=255)
                                                                                  ttCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAg       >  1:2579947/1‑93 (MQ=255)
                                                                                  ttCGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAg       >  1:3993468/1‑93 (MQ=255)
                                                                                  ttCGTGATGCCAGCGCACCAGCACCGACTGAGCGGGTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAg       >  1:2626054/1‑93 (MQ=255)
                                                                                  ttCGTGATACCAGCGCATCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAg       <  1:68728/93‑1 (MQ=255)
                                                                                   tCGTGAGGCCAGCGCACGAGCACCTACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGAACTAga      <  2:713628/93‑1 (MQ=255)
                                                                                    cGTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAgac     <  2:745950/93‑1 (MQ=255)
                                                                                     gTGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAgacg    >  2:3105683/1‑93 (MQ=255)
                                                                                      tGATGCCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAgacga   <  2:2434687/93‑1 (MQ=255)
                                                                                          |                                                                                         
CCAGATAGTTAATCAGATCGTTGTATACGCTATCGTAAATAGTGCGTCCGGTCGGGCAGGTGTGCTCAAATGCATCCAGACCTTCGTGATACCAGCGCACCAGCACCGACTGAGCGGTTTTCTCCAGATAAGGCACATGGATCTGAATATCGTGCGCCTGGCCGATACGATCCAGACGAC  >  NC_000913/61302‑61481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: