Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 689,228 T→C S293G (AGC→GGC)  lnt ← apolipoprotein N‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913689,2280TC99.4% 536.5 / ‑5.5 173S293G (AGC→GGC) lntapolipoprotein N‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (87/85);  total (88/85)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01

Only 100 of 179 total aligned reads displayed.

CCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAA  >  NC_000913/689140‑689317
                                                                                        |                                                                                         
ccTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCt                                                                                       >  1:2567030/1‑93 (MQ=255)
  tttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCttt                                                                                     >  2:4428964/1‑93 (MQ=255)
  tttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCttt                                                                                     <  1:3855665/93‑1 (MQ=255)
  tttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCttt                                                                                     >  2:2523487/1‑93 (MQ=255)
   ttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTa                                                                                    <  2:189129/93‑1 (MQ=255)
   ttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGATTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTa                                                                                    <  1:1230446/93‑1 (MQ=255)
    tACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTAt                                                                                   <  2:3841344/93‑1 (MQ=255)
     aCCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATc                                                                                  >  2:683069/1‑93 (MQ=255)
      cccAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCa                                                                                 <  2:3460901/93‑1 (MQ=255)
       ccAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCAc                                                                                >  1:318292/1‑93 (MQ=255)
       ccAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCAc                                                                                >  2:54820/1‑93 (MQ=255)
         aGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGc                                                                              >  1:3091061/1‑93 (MQ=255)
         aGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGc                                                                              >  1:423796/1‑93 (MQ=255)
            gTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAAc                                                                           >  1:1228336/1‑93 (MQ=255)
             tgatgaTGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACt                                                                          >  2:3075429/1‑93 (MQ=255)
               atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCa                                                                        <  1:2604509/93‑1 (MQ=255)
                 gatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCAcc                                                                      <  2:3062022/93‑1 (MQ=255)
                   tgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGt                                                                    >  2:3111813/1‑93 (MQ=255)
                    ggTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTc                                                                   <  1:4260376/93‑1 (MQ=255)
                      tgttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCa                                                                 <  2:913213/93‑1 (MQ=255)
                      tgttgtAGGTATCGTAGCGGTTCTGCGTATTGAGACGCGCGACGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCa                                                                 <  1:448417/93‑1 (MQ=255)
                       gttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAg                                                                <  1:1009731/93‑1 (MQ=255)
                         tgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTg                                                              <  2:3630189/93‑1 (MQ=255)
                          ttAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGc                                                             <  2:2849909/92‑1 (MQ=255)
                          gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGc                                                             <  1:113750/93‑1 (MQ=255)
                          gtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGc                                                             <  1:2903368/93‑1 (MQ=255)
                           tAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCt                                                            >  1:2316505/1‑93 (MQ=255)
                            agttATCGTAGCGTTTCTGCTTAGTGAGACGCGCGACGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCtt                                                           <  1:2928419/90‑1 (MQ=255)
                            aGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCtt                                                           <  1:2723291/93‑1 (MQ=255)
                            aGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCtt                                                           <  1:4641583/93‑1 (MQ=255)
                             ggTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCttt                                                          >  1:4440018/1‑93 (MQ=255)
                             ggTATCGTAGCGGGTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCttt                                                          <  2:809128/93‑1 (MQ=255)
                              gTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTg                                                         >  1:150639/1‑93 (MQ=255)
                               tATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGa                                                        <  1:4167888/93‑1 (MQ=255)
                               tATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGa                                                        <  1:4425737/93‑1 (MQ=255)
                                aTCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAg                                                       >  1:3544612/1‑93 (MQ=255)
                                aTCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAg                                                       >  2:1275714/1‑93 (MQ=255)
                                aTCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAg                                                       <  2:4110691/93‑1 (MQ=255)
                                aTCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAg                                                       <  2:4251381/93‑1 (MQ=255)
                                  cGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGa                                                     <  2:4323120/93‑1 (MQ=255)
                                   gTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGaa                                                    <  2:1690430/93‑1 (MQ=255)
                                    tAGCGGTTCTGCTTATTGAGCCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   <  2:1532963/93‑1 (MQ=255)
                                    tAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   <  1:2548616/93‑1 (MQ=255)
                                    tAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   <  1:792275/93‑1 (MQ=255)
                                    tAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   <  2:2541075/93‑1 (MQ=255)
                                      gCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACgg                                                 >  1:1357469/1‑93 (MQ=255)
                                      gCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACgg                                                 >  2:1825412/1‑93 (MQ=255)
                                        ggTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGtt                                               >  2:3931925/1‑93 (MQ=255)
                                         gTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACTCAACTCACCGACCAGTGCTTTGACGAACTGttc                                              >  2:43452/1‑92 (MQ=255)
                                         gTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTg                                              >  1:611408/1‑93 (MQ=255)
                                         gTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTg                                              >  2:1155658/1‑93 (MQ=255)
                                         gTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTg                                              >  1:222536/1‑93 (MQ=255)
                                          ttCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGc                                             >  2:3361415/1‑93 (MQ=255)
                                           tCTGGTTATTGATACGCGCGTCGACAATCCCGGTTGCCAGCGAGCCGCCTATATCACGCACCTCGCCGTCCAGTGCTTTGAGGAACGGTTGCt                                            <  2:803065/93‑1 (MQ=255)
                                           tCTGCTTATTGAGACGCGCGTCGAAAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGCGGAACGGTTGCt                                            >  1:3948211/1‑93 (MQ=255)
                                             tGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAGCTGTTGCTgt                                          >  1:4027488/1‑92 (MQ=255)
                                             tGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGa                                          >  1:535372/1‑93 (MQ=255)
                                              gCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGAt                                         <  1:1815527/93‑1 (MQ=255)
                                              gCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGAt                                         <  2:2974892/93‑1 (MQ=255)
                                               cTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGAtt                                        <  1:880476/93‑1 (MQ=255)
                                               cTTATTGAGACGCGCGACCACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACGCACCGTCCAGTGCTTGGAGGAACGGTTGCTGAtt                                        <  1:4113069/93‑1 (MQ=255)
                                                ttATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTa                                       >  2:4498297/1‑93 (MQ=255)
                                                   ttGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAAtt                                    <  2:4298232/93‑1 (MQ=255)
                                                   ttGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAAtt                                    >  1:3432572/1‑93 (MQ=255)
                                                   ttGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAAtt                                    >  2:644129/1‑93 (MQ=255)
                                                   ttGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAAtt                                    >  2:2725240/1‑93 (MQ=255)
                                                   ttGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAAtt                                    >  1:1148399/1‑93 (MQ=255)
                                                    tGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAAttt                                   <  1:1607607/93‑1 (MQ=255)
                                                     gagaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTc                                  <  2:463924/93‑1 (MQ=255)
                                                       gaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                >  1:722774/1‑93 (MQ=255)
                                                       gaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                >  2:4469428/1‑93 (MQ=255)
                                                       gaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                <  2:1563460/93‑1 (MQ=255)
                                                         cgcgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGa                              <  1:2016413/93‑1 (MQ=255)
                                                           cgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATc                            <  1:3032371/93‑1 (MQ=255)
                                                            gcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCGCCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCg                           <  2:728610/93‑1 (MQ=255)
                                                              gTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGt                         <  2:2281990/93‑1 (MQ=255)
                                                               tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        <  2:1728046/93‑1 (MQ=255)
                                                               tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        <  2:1307743/93‑1 (MQ=255)
                                                               tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        >  1:1682988/1‑93 (MQ=255)
                                                               tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        >  1:1915014/1‑93 (MQ=255)
                                                                  aCAATCCCGGTTACGAGCGAGCCACCTTTATCCCGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATc                     <  1:1886721/93‑1 (MQ=255)
                                                                   cAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCg                    >  1:1980525/1‑93 (MQ=255)
                                                                   cAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCg                    >  1:2483027/1‑93 (MQ=255)
                                                                    aaTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGc                   >  1:1013990/1‑93 (MQ=255)
                                                                    aaTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGc                   >  1:714905/1‑93 (MQ=255)
                                                                    aaTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGc                   <  1:92640/93‑1 (MQ=255)
                                                                      tCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTACAGATCGGTTATCGCCg                 >  1:1425982/1‑93 (MQ=255)
                                                                       cccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGa                <  1:497500/93‑1 (MQ=255)
                                                                       cccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGa                <  1:2957273/93‑1 (MQ=255)
                                                                        ccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               >  1:3113428/1‑93 (MQ=255)
                                                                        ccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               >  2:4520050/1‑93 (MQ=255)
                                                                         cGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACt              >  2:4041758/1‑93 (MQ=255)
                                                                           gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTcc            <  1:478810/93‑1 (MQ=255)
                                                                           gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTcc            <  1:3833137/93‑1 (MQ=255)
                                                                           gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTcc            >  2:3349121/1‑93 (MQ=255)
                                                                            ttACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCg           >  2:3877395/1‑93 (MQ=255)
                                                                                cAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCa       >  2:1059372/1‑93 (MQ=255)
                                                                                 aGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAg      <  2:1304388/93‑1 (MQ=255)
                                                                                  gCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGa     >  1:2990518/1‑93 (MQ=255)
                                                                                    gAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATa   <  2:3731057/93‑1 (MQ=255)
                                                                                        |                                                                                         
CCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAA  >  NC_000913/689140‑689317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: