BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	744,690	T→C	R101R (CGT→CGC)	ybgL →	putative lactam utilization protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	744,690	0	T	C	100.0%	507.0 / NA	159	R101R (CGT→CGC)	ybgL	putative lactam utilization protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (77/82); total (77/82)

Only 100 of 166 total aligned reads displayed.

CAGCTGCCGCCAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGTCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGTATACGCTTGCG  >  NC_000913/744601‑744778

 aGCTGCCGCCAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATg                                                                                      >  2:2861245/1‑93 (MQ=255)

   cTGCCGCCAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTTCCCGTGCGCAAGGCGGCGTAATACGCCAtctc                                                                                    >  1:3102733/1‑93 (MQ=255)

    tGCCGCCAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCa                                                                                   <  2:3677174/93‑1 (MQ=255)

       cgccAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAAc                                                                                >  1:3857086/1‑93 (MQ=255)

       cgccAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAAc                                                                                <  2:470433/93‑1 (MQ=255)

        gccAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAAcc                                                                               >  2:1680760/1‑93 (MQ=255)

          cAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGc                                                                             >  1:2574560/1‑93 (MQ=255)

          cAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGc                                                                             <  1:2247688/93‑1 (MQ=255)

           aGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCa                                                                            <  2:1376216/93‑1 (MQ=255)

           aGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCa                                                                            <  1:839786/93‑1 (MQ=255)

               aCCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGc                                                                        >  1:110644/1‑93 (MQ=255)

                ccGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCa                                                                       >  1:4079792/1‑93 (MQ=255)

                  gTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCAtg                                                                     >  1:2505707/1‑93 (MQ=255)

                   tttCCGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCAtgt                                                                    <  2:2402224/93‑1 (MQ=255)

                   tttACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCAtgt                                                                    >  1:2998874/1‑93 (MQ=255)

                   tttACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCAtgt                                                                    <  1:834344/93‑1 (MQ=255)

                   tttACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCAtgt                                                                    >  2:2697358/1‑93 (MQ=255)

                    ttACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCAtgtt                                                                   <  1:1113612/93‑1 (MQ=255)

                    ttACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCAtgtt                                                                   <  1:2779210/93‑1 (MQ=255)

                    ttACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCAtgtt                                                                   <  2:3005423/93‑1 (MQ=255)

                    ttACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCAtgtt                                                                   <  2:3869676/93‑1 (MQ=255)

                       cGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTa                                                                <  2:1517026/93‑1 (MQ=255)

                         cccAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACa                                                              >  2:209390/1‑93 (MQ=255)

                         cccAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACa                                                              <  2:3827338/93‑1 (MQ=255)

                          ccAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACaa                                                             >  2:2657669/1‑93 (MQ=255)

                          ccAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACaa                                                             >  1:4387135/1‑93 (MQ=255)

                             gACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAAAGCGCCAAGTCAAACCGCACGGCATGTTGTACAACCa                                                          <  2:4680309/93‑1 (MQ=255)

                              aCGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAg                                                         <  1:1730485/93‑1 (MQ=255)

                              aCGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAg                                                         <  1:4292717/93‑1 (MQ=255)

                               cGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAgg                                                        <  2:2300383/93‑1 (MQ=255)

                               cGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAgg                                                        >  2:4305974/1‑93 (MQ=255)

                                gCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAggc                                                       <  1:622404/93‑1 (MQ=255)

                                gCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAggc                                                       >  1:35260/1‑93 (MQ=255)

                                 cTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAggcg                                                      >  2:219112/1‑93 (MQ=255)

                                   gTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAggcggc                                                    <  2:2470163/93‑1 (MQ=255)

                                    tATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGgcggcg                                                   >  1:2664723/1‑93 (MQ=255)

                                    tATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGgcggcg                                                   >  2:592630/1‑93 (MQ=255)

                                     aTCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGa                                                  <  1:4653707/93‑1 (MQ=255)

                                     aTCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGa                                                  >  1:1001667/1‑93 (MQ=255)

                                        aaaTTGGCGCGCTGGCAGCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAaag                                               <  2:4412939/93‑1 (MQ=255)

                                        aaaTTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAaag                                               >  1:3005705/1‑93 (MQ=255)

                                         aaTTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAaaga                                              >  2:926076/1‑93 (MQ=255)

                                         aaTTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAaaga                                              >  2:824802/1‑93 (MQ=255)

                                         aaTTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAaaga                                              >  1:2691352/1‑93 (MQ=255)

                                          aTTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAaagaa                                             <  2:1406088/93‑1 (MQ=255)

                                            tGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGc                                           <  2:43756/93‑1 (MQ=255)

                                              gcgcgcTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGcac                                         >  1:2047422/1‑93 (MQ=255)

                                                gcgcTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACaa                                       <  1:3546029/93‑1 (MQ=255)

                                                    tGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTgg                                   >  1:4015986/1‑93 (MQ=255)

                                                     ggCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTgga                                  >  1:3100456/1‑92 (MQ=255)

                                                     ggCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGc                                  <  2:892858/93‑1 (MQ=255)

                                                     ggCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGc                                  <  2:3478075/93‑1 (MQ=255)

                                                        aaCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGa                               <  1:4499449/93‑1 (MQ=255)

                                                        aaCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGa                               >  1:94135/1‑93 (MQ=255)

                                                        aaCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGa                               <  2:1263138/93‑1 (MQ=255)

                                                        aaCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGa                               >  1:1776194/1‑93 (MQ=255)

                                                        aaCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGa                               <  1:1976093/93‑1 (MQ=255)

                                                        aaCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGa                               <  1:1895703/93‑1 (MQ=255)

                                                         aCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAACCCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGAc                              <  1:4069125/93‑1 (MQ=255)

                                                         aCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGAc                              >  1:121832/1‑93 (MQ=255)

                                                         aCGATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGAc                              <  1:1004688/93‑1 (MQ=255)

                                                           gATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGCAAGAAGCACAACTGGCAGACGc                            >  2:1933067/1‑93 (MQ=255)

                                                           gATTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGc                            <  1:4432837/93‑1 (MQ=255)

                                                            aTTGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGcc                           <  2:3171109/93‑1 (MQ=255)

                                                             ttGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCa                          >  2:3096705/1‑93 (MQ=255)

                                                             ttGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCa                          >  2:917743/1‑93 (MQ=255)

                                                             ttGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCa                          >  2:4181189/1‑93 (MQ=255)

                                                             ttGCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCa                          >  1:2593081/1‑93 (MQ=255)

                                                             ggtcccGTGCGCAAGGCGGCGTAATGCGCCGTGTCAACCCGCGCGCCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGAGGCCa                          <  2:2375255/90‑1 (MQ=255)

                                                               gCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATc                        <  2:3188291/93‑1 (MQ=255)

                                                               gCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATc                        <  2:2753130/93‑1 (MQ=255)

                                                               gCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATc                        <  1:3632702/93‑1 (MQ=255)

                                                               gCCCGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATc                        >  2:1435821/1‑93 (MQ=255)

                                                                 ccGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGc                      >  2:2921022/1‑93 (MQ=255)

                                                                 ccGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGc                      >  1:3070727/1‑93 (MQ=255)

                                                                  cGTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGcc                     >  1:4471419/1‑93 (MQ=255)

                                                                   gTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCa                    >  1:1580506/1‑93 (MQ=255)

                                                                   gTGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCa                    >  2:139118/1‑93 (MQ=255)

                                                                    tGCGCAAGGCGGCGTAATGCGCCGTGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCag                   <  2:3225515/93‑1 (MQ=255)

                                                                    tGCGCAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCag                   >  2:3910650/1‑93 (MQ=255)

                                                                     gcgcAATGCGGCGTAATGCGCCATGTCAAACCGCACGTCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCaga                  <  2:695845/93‑1 (MQ=255)

                                                                     gcgcAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCaga                  <  1:4477487/93‑1 (MQ=255)

                                                                        cAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCGAGAGCg               >  1:1344666/1‑93 (MQ=255)

                                                                        cAAGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCg               >  2:3899790/1‑93 (MQ=255)

                                                                         aaGGCGGCTTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCgg              <  2:1821062/93‑1 (MQ=255)

                                                                         aaGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCgg              <  1:1790107/93‑1 (MQ=255)

                                                                         aaGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCgg              >  1:1716498/1‑93 (MQ=255)

                                                                          aGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCgga             >  1:2252703/1‑92 (MQ=255)

                                                                          aGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGt             >  1:2717588/1‑93 (MQ=255)

                                                                          aGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGt             >  1:4674460/1‑93 (MQ=255)

                                                                          aGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGt             >  2:709365/1‑93 (MQ=255)

                                                                          aGGCGGCGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGt             >  1:1504624/1‑93 (MQ=255)

                                                                           ggcggcGTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGta            <  1:3931894/93‑1 (MQ=255)

                                                                               gcgTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGTATACg        >  1:962535/1‑93 (MQ=255)

                                                                               gcgTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGTATACg        >  1:347307/1‑93 (MQ=255)

                                                                                 gTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGTATACGCt      >  1:1416168/1‑93 (MQ=255)

                                                                                 gTAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGTATACGCt      >  1:1359062/1‑93 (MQ=255)

                                                                                  tAATGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGTATACGCtc     >  1:4245506/1‑92 (MQ=255)

                                                                                   aaTGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGTATACGCTTg    <  2:3416482/93‑1 (MQ=255)

                                                                                     tGCGCCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGTATACGCTTGCg  <  2:3971284/93‑1 (MQ=255)

CAGCTGCCGCCAGAAACCGTTTACGCCCAGACGCTGTATCAAATTGGCGCGCTGGCAACGATTGCCCGTGCGCAAGGCGGCGTAATGCGTCATGTCAAACCGCACGGCATGTTGTACAACCAGGCGGCGAAAGAAGCACAACTGGCAGACGCCATCGCCAGAGCGGTATACGCTTGCG  >  NC_000913/744601‑744778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`