BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	969,798	T→C	L396P (CTC→CCC)	ycaQ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	969,798	0	T	C	100.0%	347.6 / NA	112	L396P (CTC→CCC)	ycaQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (52/60); total (52/60)

Only 100 of 117 total aligned reads displayed.

CGCTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCT  >  NC_000913/969708‑969886

cGCTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCccct                                                                                        <  2:1963949/93‑1 (MQ=255)

 gCTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCtt                                                                                       <  1:16323/93‑1 (MQ=255)

  cTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCttt                                                                                      <  2:2460768/93‑1 (MQ=255)

  cTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCttt                                                                                      >  1:2820604/1‑93 (MQ=255)

   tGCAAAAAGGGCTGCGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCTACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTa                                                                                     <  2:3827112/93‑1 (MQ=255)

   tGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTa                                                                                     >  2:1269380/1‑93 (MQ=255)

    gCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTAc                                                                                    >  1:1248823/1‑93 (MQ=255)

       aaaaGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGa                                                                                 >  2:695973/1‑93 (MQ=255)

       aaaaGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGa                                                                                 <  2:577936/93‑1 (MQ=255)

        aaaGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGAt                                                                                <  1:2191544/93‑1 (MQ=255)

           gggCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCGTTTACTGATTGc                                                                             >  2:288591/1‑93 (MQ=255)

           gggCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGc                                                                             >  1:4212147/1‑93 (MQ=255)

           gggCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGc                                                                             >  1:722643/1‑93 (MQ=255)

           gggCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGc                                                                             >  2:2862842/1‑93 (MQ=255)

           gggCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGc                                                                             <  2:560212/93‑1 (MQ=255)

             gCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCg                                                                           >  2:3496889/1‑93 (MQ=255)

              cTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGc                                                                          <  1:2901001/93‑1 (MQ=255)

               tACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCa                                                                         >  2:3551644/1‑93 (MQ=255)

               tACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCa                                                                         >  1:2610256/1‑93 (MQ=255)

                aCGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCAc                                                                        >  1:644515/1‑93 (MQ=255)

                   tCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCgg                                                                     >  1:556752/1‑93 (MQ=255)

                     aGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCt                                                                   >  1:348466/1‑93 (MQ=255)

                      ggCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTg                                                                  <  2:4530955/93‑1 (MQ=255)

                         gATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGGGACATTAGGATGCTGCCCGCCACGCCCCTTTACTGATTTCCGCACCGGCTGGGa                                                               >  2:63526/1‑93 (MQ=255)

                         gATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGGGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGa                                                               >  1:255150/1‑93 (MQ=255)

                          aTTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGaa                                                              >  2:268252/1‑93 (MQ=255)

                          aTTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGaa                                                              >  2:2033198/1‑93 (MQ=255)

                            tACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAAt                                                            >  2:4296372/1‑93 (MQ=255)

                             aCTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATa                                                           >  1:1109557/1‑93 (MQ=255)

                             aCTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATa                                                           >  2:2444208/1‑93 (MQ=255)

                             aCTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATa                                                           <  2:3908835/93‑1 (MQ=255)

                              cTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAg                                                          <  2:2964199/93‑1 (MQ=255)

                              cTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAg                                                          <  1:1480432/93‑1 (MQ=255)

                                 aTTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGAcc                                                       >  1:3764474/1‑93 (MQ=255)

                                 aTTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGAcc                                                       <  1:1840910/93‑1 (MQ=255)

                                  tttCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGAccc                                                      <  2:1871993/93‑1 (MQ=255)

                                  tttCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGAccc                                                      >  2:3078840/1‑93 (MQ=255)

                                     cGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGt                                                   >  2:3244889/1‑93 (MQ=255)

                                         aaCTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCa                                               >  1:1730536/1‑93 (MQ=255)

                                         aaCTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCa                                               <  1:3370213/93‑1 (MQ=255)

                                          aCTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCAt                                              <  1:3935070/93‑1 (MQ=255)

                                             ggCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATaaa                                           <  1:3568632/93‑1 (MQ=255)

                                              gcagcaGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGCAATAGACCCCGTCGCATAAAt                                          <  2:2984820/93‑1 (MQ=255)

                                              gcagcaGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAAt                                          <  2:1015591/93‑1 (MQ=255)

                                              gcagcaGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAAt                                          <  1:3708809/93‑1 (MQ=255)

                                                agcagGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGa                                        <  1:300551/93‑1 (MQ=255)

                                                 gcagGCAACGCTGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGAt                                       <  1:4552317/93‑1 (MQ=255)

                                                 gcagGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGAt                                       >  2:4063616/1‑93 (MQ=255)

                                                 gcagGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGAt                                       >  1:1237147/1‑93 (MQ=255)

                                                  cagGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGAtt                                      <  2:204747/93‑1 (MQ=255)

                                                  cagGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGAtt                                      <  1:2256717/93‑1 (MQ=255)

                                                   agGCAACGCGGGTGACATTATGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTa                                     <  1:4579573/93‑1 (MQ=255)

                                                   agGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTa                                     <  2:2823443/93‑1 (MQ=255)

                                                   agGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTa                                     <  2:36095/93‑1 (MQ=255)

                                                   agGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTa                                     <  2:4132886/93‑1 (MQ=255)

                                                    ggCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTAt                                    <  1:3096374/93‑1 (MQ=255)

                                                    ggCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTAt                                    >  1:1011726/1‑93 (MQ=255)

                                                    ggCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTAt                                    <  2:465121/93‑1 (MQ=255)

                                                      cAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGa                                  <  2:3304514/93‑1 (MQ=255)

                                                        aCGCGGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATa                                >  2:2769793/1‑93 (MQ=255)

                                                         cgcgGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGTAAATAGACCCCGTCGCATAAATGATTATGATaa                               <  2:321318/93‑1 (MQ=255)

                                                         cgcgGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATaa                               <  2:458442/93‑1 (MQ=255)

                                                         cgcgGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATaa                               <  1:2921266/93‑1 (MQ=255)

                                                         cgcgGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATaa                               <  1:3912966/93‑1 (MQ=255)

                                                          gcgGGTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAg                              <  2:2185862/93‑1 (MQ=255)

                                                            gggTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAt                            <  2:3196758/93‑1 (MQ=255)

                                                            gggTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAt                            <  2:2599743/93‑1 (MQ=255)

                                                             ggTGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAtt                           <  1:4630688/93‑1 (MQ=255)

                                                               tGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTa                         <  1:2428937/93‑1 (MQ=255)

                                                               tGACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTa                         <  2:1249788/93‑1 (MQ=255)

                                                                gACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTAt                        >  1:4516113/1‑93 (MQ=255)

                                                                gACATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTAt                        >  1:3402123/1‑93 (MQ=255)

                                                                 aCATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATg                       <  2:1335676/93‑1 (MQ=255)

                                                                  cATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGc                      <  2:2817992/93‑1 (MQ=255)

                                                                  cATTAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGc                      <  1:3071724/93‑1 (MQ=255)

                                                                   aTTAGGATACTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGCCGCCTAAATGAATATGATAAGATTTATGCa                     >  2:4567883/1‑93 (MQ=255)

                                                                    ttAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAACTGATTATGATAAGATTTCTGCAt                    >  2:345516/1‑93 (MQ=255)

                                                                     tAGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCAtt                   <  1:4369251/93‑1 (MQ=255)

                                                                      aGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTc                  <  1:2081342/93‑1 (MQ=255)

                                                                      aGGATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTc                  <  2:3919274/93‑1 (MQ=255)

                                                                       ggATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCa                 <  1:3672021/93‑1 (MQ=255)

                                                                        gATGCTGCCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCAt                >  2:1808092/1‑93 (MQ=255)

                                                                          tgctgcCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATaa              <  2:2447701/93‑1 (MQ=255)

                                                                          tgctgcCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATaa              >  1:2810450/1‑93 (MQ=255)

                                                                           gctgcCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAAc             <  1:1937888/93‑1 (MQ=255)

                                                                            ctgcCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAAcc            <  2:117044/93‑1 (MQ=255)

                                                                            ctgcCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAAcc            <  1:1128217/93‑1 (MQ=255)

                                                                             tgcCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATaagcg           >  2:4601466/1‑90 (MQ=255)

                                                                             tgcCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATCAccc           >  2:1979470/1‑93 (MQ=255)

                                                                             tgcCCGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAAccc           >  2:4033062/1‑93 (MQ=255)

                                                                               cccGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGTCCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGa         <  1:1282474/93‑1 (MQ=255)

                                                                               cccGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGa         <  1:2937760/93‑1 (MQ=255)

                                                                                ccGCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGAt        <  2:3500163/93‑1 (MQ=255)

                                                                                  gCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGCTTATGATAAGATTTATGCATTCATTACCCGATcc      >  2:2855886/1‑93 (MQ=255)

                                                                                  gCAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATcc      >  2:1647583/1‑93 (MQ=255)

                                                                                   cAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCa     >  1:3724437/1‑93 (MQ=255)

                                                                                   cAAGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCa     >  1:497725/1‑93 (MQ=255)

                                                                                     aGGCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTTATAACTCGATCCATc   >  1:2123561/1‑93 (MQ=255)

                                                                                      ggCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCt  >  1:4571561/1‑93 (MQ=255)

                                                                                      ggCCCCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCt  <  2:697941/93‑1 (MQ=255)

CGCTGCAAAAAGGGCTACGTCAGGCGATTACTGATTTCGCTAACTGGCAGCAGGCAACGCGGGTGACATTAGGATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCT  >  NC_000913/969708‑969886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`