BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,056,882	T→C	Y99C (TAC→TGC)	torR ←	TorR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,056,882	0	T	C	99.1%	343.0 / ‑4.6	112	Y99C (TAC→TGC)	torR	TorR
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (53/58); total (53/59)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.41e-01

Only 100 of 120 total aligned reads displayed.

TGCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGTAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCT  >  NC_000913/1056792‑1056971

tgCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCaa                                                                                         <  2:4588289/93‑1 (MQ=255)

   ggTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCTGTTTGGTGACGCAATCg                                                                                      >  1:722667/1‑93 (MQ=255)

    gTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGt                                                                                     >  2:3209080/1‑93 (MQ=255)

    gTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGt                                                                                     >  2:837676/1‑93 (MQ=255)

    gTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGt                                                                                     >  1:3326700/1‑93 (MQ=255)

     ttGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTc                                                                                    <  2:440157/93‑1 (MQ=255)

       gAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCCCCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTg                                                                                  <  1:1158503/93‑1 (MQ=255)

       gAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTg                                                                                  >  2:1140073/1‑93 (MQ=255)

         gCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTgcg                                                                                >  2:2995125/1‑93 (MQ=255)

          cTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTgcgc                                                                               >  1:1802429/1‑93 (MQ=255)

             gTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCa                                                                            <  2:138445/93‑1 (MQ=255)

              tCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTGCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCAt                                                                           <  2:4661713/93‑1 (MQ=255)

               cgcgcgAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCAtt                                                                          <  1:3333205/93‑1 (MQ=255)

                  gcgAGGTCGATTCGCCAGAGCATATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTcc                                                                       <  1:3203404/93‑1 (MQ=255)

                   cgAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCa                                                                      <  1:3204799/93‑1 (MQ=255)

                   cgAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCa                                                                      <  2:3825240/93‑1 (MQ=255)

                      ggTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGcc                                                                   >  2:2181020/1‑93 (MQ=255)

                      ggTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGcc                                                                   >  2:921086/1‑93 (MQ=255)

                        tCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCACATTTCCAGCCca                                                                 >  1:3021044/1‑93 (MQ=255)

                         cGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaa                                                                <  2:1545114/93‑1 (MQ=255)

                          gATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaac                                                               >  2:745581/1‑93 (MQ=255)

                          gATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaac                                                               >  1:4673181/1‑93 (MQ=255)

                          gATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaac                                                               >  2:2285743/1‑93 (MQ=255)

                           aTTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaaca                                                              <  2:1107791/93‑1 (MQ=255)

                            ttCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCcaacaa                                                             >  2:4281034/1‑93 (MQ=255)

                             tCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAAt                                                            <  2:193943/93‑1 (MQ=255)

                              cGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATa                                                           <  1:384905/93‑1 (MQ=255)

                               gCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATAc                                                          <  2:3729168/93‑1 (MQ=255)

                               gCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATAc                                                          <  1:1123623/93‑1 (MQ=255)

                               gCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATAc                                                          >  1:1636972/1‑93 (MQ=255)

                               gCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATAc                                                          >  2:4248829/1‑93 (MQ=255)

                                  agagCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGt                                                       <  1:1975209/93‑1 (MQ=255)

                                  agagCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGt                                                       >  2:4474268/1‑93 (MQ=255)

                                  agagCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGt                                                       >  1:1993237/1‑93 (MQ=255)

                                  agagCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGt                                                       <  2:2992542/93‑1 (MQ=255)

                                   gagCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTc                                                      >  1:2957373/1‑93 (MQ=255)

                                      cAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAAt                                                   >  2:1173944/1‑93 (MQ=255)

                                      cAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAAt                                                   <  1:2233431/93‑1 (MQ=255)

                                       aGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATc                                                  >  2:3670139/1‑93 (MQ=255)

                                       aGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATc                                                  <  2:2009132/93‑1 (MQ=255)

                                       aGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATc                                                  <  1:3794363/93‑1 (MQ=255)

                                       aGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATc                                                  <  2:2172841/93‑1 (MQ=255)

                                         aTTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCg                                                >  1:497922/1‑93 (MQ=255)

                                         aTTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCg                                                <  1:963760/93‑1 (MQ=255)

                                           ttttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGAt                                              <  2:163843/93‑1 (MQ=255)

                                           ttttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGAt                                              >  2:2087255/1‑93 (MQ=255)

                                           ttttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGAt                                              <  2:109412/93‑1 (MQ=255)

                                           ttttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGAt                                              <  2:2405730/93‑1 (MQ=255)

                                           ttgtCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGAt                                              <  1:1086908/90‑1 (MQ=255)

                                            tttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATc                                             >  1:1829810/1‑93 (MQ=255)

                                            tttCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATc                                             <  1:3556514/93‑1 (MQ=255)

                                              tCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGc                                           <  1:140765/93‑1 (MQ=255)

                                                aCCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTg                                         >  2:313077/1‑93 (MQ=255)

                                                 cccGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGc                                        <  1:4545536/93‑1 (MQ=255)

                                                 cccGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGc                                        >  2:4382662/1‑93 (MQ=255)

                                                  ccGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCg                                       >  2:3124254/1‑93 (MQ=255)

                                                  ccGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCg                                       >  2:2774198/1‑93 (MQ=255)

                                                  ccGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCg                                       >  1:3794800/1‑93 (MQ=255)

                                                  ccGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCg                                       >  1:3189367/1‑93 (MQ=255)

                                                    gTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTc                                     <  1:1020534/93‑1 (MQ=255)

                                                    gTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTc                                     <  2:3578902/93‑1 (MQ=255)

                                                    gTACTACCAGGTCGCGCCGTTCCAGCGGCTTCGTGACGCAATCGTCTTCGCCCATTTCCAGCCCAACAATACGGTCAATACGATCGCCGCGTc                                     >  2:2274246/1‑93 (MQ=255)

                                                     tactacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGGAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGACAATCCGATCGCTGCGTcc                                    >  2:3360915/1‑93 (MQ=255)

                                                     tactacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTcc                                    >  1:680887/1‑93 (MQ=255)

                                                       ctacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCgg                                  >  1:1551187/1‑93 (MQ=255)

                                                       ctacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCgg                                  >  1:3006086/1‑93 (MQ=255)

                                                        tacCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGt                                 >  2:3315562/1‑93 (MQ=255)

                                                         acCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTa                                >  2:1574389/1‑93 (MQ=255)

                                                           cAGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAAc                              <  2:3701158/93‑1 (MQ=255)

                                                            aGTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAAcc                             >  1:2123185/1‑93 (MQ=255)

                                                             gTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCa                            <  1:2233627/93‑1 (MQ=255)

                                                             gTTCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCa                            <  1:1527216/93‑1 (MQ=255)

                                                             gTTCGCGCAGTCCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGACTAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCa                            <  2:4325288/93‑1 (MQ=255)

                                                              ttCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAg                           >  2:2478936/1‑93 (MQ=255)

                                                               tCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGa                          >  2:386872/1‑93 (MQ=255)

                                                               tCGCGCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGa                          >  2:2840682/1‑93 (MQ=255)

                                                                cgcgCAGTTCCAGCGGTTTGGTGACGCCATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaa                         <  1:2156131/93‑1 (MQ=255)

                                                                cgcgCAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaa                         <  1:2725133/93‑1 (MQ=255)

                                                                 gcgcAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaat                        <  1:1370110/93‑1 (MQ=255)

                                                                 gcgcAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaat                        <  2:472653/93‑1 (MQ=255)

                                                                 gcgcAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaat                        >  2:3035859/1‑93 (MQ=255)

                                                                  cgcAGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGaata                       <  1:4103701/93‑1 (MQ=255)

                                                                     aGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAatcatc                    >  1:2870426/1‑93 (MQ=255)

                                                                     aGTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATc                    >  1:4175678/1‑93 (MQ=255)

                                                                      gTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATcc                   >  2:3315317/1‑93 (MQ=255)

                                                                      gTTCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATcc                   <  1:3791981/93‑1 (MQ=255)

                                                                       ttCCAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATccc                  <  1:1222382/93‑1 (MQ=255)

                                                                         ccAGGGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCa                <  2:1237320/93‑1 (MQ=255)

                                                                          cAGCGGTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCAc               >  2:2952630/1‑93 (MQ=255)

                                                                            gCGGTTTGGTGACGCAATCGGCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCg             >  1:2137409/1‑93 (MQ=255)

                                                                              ggTTTGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGtt           <  2:3375628/93‑1 (MQ=255)

                                                                               gTTTGGTGCCGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGCCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTg          >  1:4159218/1‑93 (MQ=255)

                                                                                tttGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGa         <  2:446284/93‑1 (MQ=255)

                                                                                tttGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGa         <  2:697146/93‑1 (MQ=255)

                                                                                  tGGTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGc       <  2:2375061/93‑1 (MQ=255)

                                                                                    gTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGt     <  2:3134140/93‑1 (MQ=255)

                                                                                    gTGACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAACCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCCCCGTTGAGCGt     <  2:63169/93‑1 (MQ=255)

                                                                                      gACGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTtc   <  1:3446748/93‑1 (MQ=255)

                                                                                       aCGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTtct  <  1:4290370/93‑1 (MQ=255)

                                                                                       aCGCAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTtct  <  1:2260371/93‑1 (MQ=255)

TGCGGTTGAGCTTGTCGCGCGAGGTCGATTCGCCAGAGCAGATTTTTCACCCGTACTACCAGTTCGCGCAGTTCCAGCGGTTTGGTGACGTAATCGTCTGCGCCCATTTCCAGCCCAACAATACGGTCAATCCGATCGCTGCGTCCGGTAACCAGAATAATCCCCACCGTTGAGCGTTCT  >  NC_000913/1056792‑1056971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`