BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,137,414	A→G	D274G (GAC→GGC)	flgJ →	FlgJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,137,414	0	A	G	100.0%	356.0 / NA	115	D274G (GAC→GGC)	flgJ	FlgJ
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (40/75); total (40/75)

Only 100 of 124 total aligned reads displayed.

CGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAA  >  NC_000913/1137324‑1137502

cGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGcg                                                                                        >  2:373426/1‑93 (MQ=255)

 ggATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGgcgc                                                                                       <  1:3022906/93‑1 (MQ=255)

 ggATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGgcgc                                                                                       >  2:2293425/1‑93 (MQ=255)

  gATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGcgcg                                                                                      >  1:3549128/1‑93 (MQ=255)

   aTTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCgg                                                                                     >  2:3299620/1‑93 (MQ=255)

    ttACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCggg                                                                                    >  1:1534169/1‑93 (MQ=255)

        tttGGCCGGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTAt                                                                                <  1:3957706/92‑1 (MQ=255)

        gTTGGGCTGTTAACGCGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTAt                                                                                <  1:478417/93‑1 (MQ=255)

        gTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTAt                                                                                >  1:1199488/1‑93 (MQ=255)

         ttGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATg                                                                               <  1:2368075/93‑1 (MQ=255)

          tGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGc                                                                              >  2:1320073/1‑93 (MQ=255)

          tGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGc                                                                              <  2:4606181/93‑1 (MQ=255)

           gggCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGcc                                                                             >  2:1554930/1‑93 (MQ=255)

           gggCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGcc                                                                             >  1:4537510/1‑93 (MQ=255)

            ggttGTTAACGCGTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCa                                                                            <  2:3242079/90‑1 (MQ=255)

            ggCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCa                                                                            <  1:445504/93‑1 (MQ=255)

              cTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCAcc                                                                          <  1:2550654/93‑1 (MQ=255)

               tGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCg                                                                         >  1:3701376/1‑93 (MQ=255)

               tGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGCCACCg                                                                         >  2:1894092/1‑93 (MQ=255)

                  tAACGCGTCACCCGCTCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATc                                                                      <  1:904272/93‑1 (MQ=255)

                  tAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATc                                                                      >  2:837070/1‑93 (MQ=255)

                   aaCGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATcc                                                                     >  2:2725789/1‑93 (MQ=255)

                       cgTAGCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCAc                                                                 <  1:3596720/93‑1 (MQ=255)

                       cgTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCAc                                                                 <  1:2252048/93‑1 (MQ=255)

                       cgTACCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCAc                                                                 <  1:3714994/93‑1 (MQ=255)

                       cgTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCAc                                                                 <  1:511596/93‑1 (MQ=255)

                         taccccGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTa                                                               <  1:4100951/90‑1 (MQ=255)

                         tAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTa                                                               <  1:2673734/93‑1 (MQ=255)

                         tAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTa                                                               <  1:1321141/93‑1 (MQ=255)

                           aCCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATg                                                             >  1:587952/1‑93 (MQ=255)

                             ccGCGCTCCGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGcc                                                           <  1:4428068/93‑1 (MQ=255)

                             ccGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGcc                                                           <  2:3084633/93‑1 (MQ=255)

                             ccGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGcc                                                           >  1:4245900/1‑93 (MQ=255)

                             ccGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGcc                                                           <  1:2026015/93‑1 (MQ=255)

                                cgcTGCGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGc                                                        <  1:1507417/93‑1 (MQ=255)

                                cgcTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGc                                                        >  1:1692348/1‑93 (MQ=255)

                                 gcTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCa                                                       >  2:3244688/1‑93 (MQ=255)

                                  cTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCaa                                                      >  2:2251578/1‑93 (MQ=255)

                                   tACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCaaa                                                     >  2:389315/1‑93 (MQ=255)

                                   gaCGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCaaa                                                     >  2:4503522/2‑93 (MQ=255)

                                    aCGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAAc                                                    <  1:2586575/93‑1 (MQ=255)

                                      gccgccGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTc                                                  <  2:4316079/93‑1 (MQ=255)

                                      gccgccGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTc                                                  <  2:819292/93‑1 (MQ=255)

                                       ccgccgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCa                                                 <  1:289197/93‑1 (MQ=255)

                                       ccgccgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCa                                                 <  2:3671731/93‑1 (MQ=255)

                                        cgccgTGACGACCGCCGCGAGTGCGGAACAGGGGGCTCAGGCCCTACAGGGCTCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCAc                                                <  2:4621611/93‑1 (MQ=255)

                                        cgccgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCAc                                                >  1:836/1‑93 (MQ=255)

                                         gccgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCAcc                                               <  1:4600124/93‑1 (MQ=255)

                                          ccgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCa                                              <  2:2665871/93‑1 (MQ=255)

                                           cgTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCaa                                             <  2:1502786/93‑1 (MQ=255)

                                            gTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCTGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAAc                                            <  1:2515234/93‑1 (MQ=255)

                                            gTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGGTCCTCACTATGCCCGCAAACTCACCAAc                                            >  1:4508881/1‑93 (MQ=255)

                                            gTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAAc                                            >  2:4626508/1‑93 (MQ=255)

                                             tGACGGCCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACa                                           <  1:479638/93‑1 (MQ=255)

                                              gacgacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACAt                                          <  2:2909334/93‑1 (MQ=255)

                                               acgacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATg                                         <  1:4175298/93‑1 (MQ=255)

                                                cgacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGa                                        <  1:2094436/93‑1 (MQ=255)

                                                cgacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGa                                        <  2:4387442/93‑1 (MQ=255)

                                                cgacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGa                                        <  1:4564772/93‑1 (MQ=255)

                                                 gacCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGAt                                       <  2:4250112/93‑1 (MQ=255)

                                                   ccgccgCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTc                                     <  2:4388772/93‑1 (MQ=255)

                                                    cgccgcGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTca                                    <  1:3435078/93‑1 (MQ=255)

                                                      ccgcGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcagc                                  >  1:3911253/1‑93 (MQ=255)

                                                      ccgcGAGTGCGGAACAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcagc                                  >  1:67128/1‑93 (MQ=255)

                                                       cgcgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcagca                                 <  1:1282016/93‑1 (MQ=255)

                                                        gcgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcagcag                                <  1:726865/93‑1 (MQ=255)

                                                        gcgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcagcag                                >  2:83457/1‑93 (MQ=255)

                                                        gcgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTcagcag                                <  1:4299834/93‑1 (MQ=255)

                                                         cgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGa                               <  2:2009133/93‑1 (MQ=255)

                                                         cgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGa                               <  1:788572/93‑1 (MQ=255)

                                                         cgAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGa                               <  1:156818/93‑1 (MQ=255)

                                                          gAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAt                              <  1:3512068/93‑1 (MQ=255)

                                                          gAGTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGAt                              <  2:3793932/93‑1 (MQ=255)

                                                            gTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGa                            >  1:1705625/1‑93 (MQ=255)

                                                            gTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGa                            >  1:3320932/1‑93 (MQ=255)

                                                            gTGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGa                            >  1:2388160/1‑93 (MQ=255)

                                                             tGCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGaa                           <  1:3760187/93‑1 (MQ=255)

                                                              gCGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGaaa                          <  2:1909101/93‑1 (MQ=255)

                                                               cGGAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAAt                         <  2:4266351/93‑1 (MQ=255)

                                                                 gAACAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCg                       >  2:236802/1‑93 (MQ=255)

                                                                 gAACAGGGGGCGCAGGACCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCg                       >  1:253542/1‑93 (MQ=255)

                                                                   aCAGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGAt                     <  1:3567694/93‑1 (MQ=255)

                                                                     aGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATaa                   <  2:722650/93‑1 (MQ=255)

                                                                     aGGGGGCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATaa                   <  2:3141349/93‑1 (MQ=255)

                                                                      gggggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAg                  <  2:2616007/93‑1 (MQ=255)

                                                                      gggggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAg                  <  2:4216955/93‑1 (MQ=255)

                                                                      gggggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAg                  <  2:1265967/93‑1 (MQ=255)

                                                                       ggggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGc                 <  2:1928636/93‑1 (MQ=255)

                                                                       ggggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGc                 <  2:1020907/93‑1 (MQ=255)

                                                                       ggggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGc                 <  1:4540178/93‑1 (MQ=255)

                                                                        gggCGCAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCg                <  2:55335/93‑1 (MQ=255)

                                                                          gcgcAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGAc              <  1:773256/93‑1 (MQ=255)

                                                                            gcAGGCGCTCCAGGGCGCGGGCTATGCCACCGATCCGCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACaa            <  1:257353/93‑1 (MQ=255)

                                                                             cAGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAg           <  1:913979/93‑1 (MQ=255)

                                                                              aGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAgg          <  1:2943980/93‑1 (MQ=255)

                                                                              aGGCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAgg          <  1:1194399/93‑1 (MQ=255)

                                                                              aGGACCTACAGGGCGCGGGCTATGCCACCGATCCTCACTTTGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGCCAAgg          >  2:2963305/1‑93 (MQ=255)

                                                                                gCCCTACAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTg        <  2:4153845/93‑1 (MQ=255)

                                                                                 cccTACAGGGCGCAGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGa       <  1:2384389/93‑1 (MQ=255)

                                                                                    aaCAGGGCGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCa    <  1:1869416/92‑1 (MQ=255)

CGGATTACGTTGGGCTGTTAACGCGTAACCCGCGCTACGCCGCCGTGACGACCGCCGCGAGTGCGGAACAGGGGGCGCAGGCCCTACAGGACGCGGGCTATGCCACCGATCCTCACTATGCCCGCAAACTCACCAACATGATTCAGCAGATGAAATCGATAAGCGACAAGGTGAGCAAA  >  NC_000913/1137324‑1137502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`