Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,358,926 T→C T3A (ACC→GCC)  b1297 ← putative glutamine synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,358,9260TC99.1% 367.3 / NA 115T3A (ACC→GCC) b1297putative glutamine synthetase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (81/33);  minor base A (1/0);  total (82/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 115 total aligned reads displayed.

TCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAA  >  NC_000913/1358838‑1359015
                                                                                        |                                                                                         
tCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTcc                                                                                       >  1:1171448/1‑93 (MQ=255)
tCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTcc                                                                                       >  1:3480540/1‑93 (MQ=255)
 ccAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCa                                                                                      >  1:2211054/1‑93 (MQ=255)
  cAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCAt                                                                                     >  1:582848/1‑93 (MQ=255)
    ggTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTTCATGa                                                                                   >  2:1777591/1‑93 (MQ=255)
     gTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAt                                                                                  >  2:1114786/1‑93 (MQ=255)
      tAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAtt                                                                                 >  1:2103874/1‑93 (MQ=255)
      tAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAtt                                                                                 >  2:39398/1‑93 (MQ=255)
        gCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAttct                                                                               >  1:2937734/1‑93 (MQ=255)
          gTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAttcttc                                                                             >  1:4514183/1‑93 (MQ=255)
          gTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAttcttc                                                                             >  2:2721094/1‑93 (MQ=255)
          gTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGAttcttc                                                                             >  1:2921434/1‑93 (MQ=255)
           tttCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCg                                                                            >  2:2245459/1‑93 (MQ=255)
           tttCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCg                                                                            >  1:2216664/1‑93 (MQ=255)
            ttCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGc                                                                           >  1:388112/1‑93 (MQ=255)
             tCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGcc                                                                          >  2:2353162/1‑93 (MQ=255)
                 ttCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTg                                                                      >  2:54718/1‑93 (MQ=255)
                    cTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgtt                                                                   >  1:4682910/1‑93 (MQ=255)
                    cTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTACATTAATTTTTGCCTTTGgtt                                                                   >  2:1807227/1‑93 (MQ=255)
                     tGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgttt                                                                  >  1:3060424/1‑93 (MQ=255)
                     tGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgttt                                                                  >  2:469459/1‑93 (MQ=255)
                         tAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGgtttgttt                                                              >  2:2942996/1‑93 (MQ=255)
                           acggCGCCCCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTc                                                            <  2:2165701/91‑1 (MQ=255)
                             ggCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTTCg                                                          >  1:4084248/1‑93 (MQ=255)
                             ggCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCg                                                          >  2:753118/1‑93 (MQ=255)
                                gcTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTTCGCTc                                                       >  2:3350835/1‑93 (MQ=255)
                                  ccccccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGt                                                     <  2:3335994/91‑1 (MQ=255)
                                   cccccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGtt                                                    <  1:1799186/92‑1 (MQ=255)
                                   cccccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGtt                                                    <  1:911711/92‑1 (MQ=255)
                                   aCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGtt                                                    >  2:2750027/1‑93 (MQ=255)
                                   aCCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGtt                                                    >  2:3815741/1‑93 (MQ=255)
                                    ccccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTa                                                   >  2:1488395/1‑93 (MQ=255)
                                     cccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTAt                                                  >  1:425343/1‑93 (MQ=255)
                                     cccGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCCTTTGTTTGTTTTGCGCTCGTTAt                                                  >  2:1046540/1‑93 (MQ=255)
                                       cGCCTCTCTTCTGACTGCTGTCCAACGTACTCTACTTCAACGATATTGGCTTCCCTGATTCTTCAACTTTAGTTTGTTTTCCGCTCGTTATcc                                                <  1:4682091/93‑2 (MQ=255)
                                       cGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCa                                                >  2:1511760/1‑93 (MQ=255)
                                        gCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCaa                                               >  1:4090490/1‑93 (MQ=255)
                                        gCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCaa                                               <  2:1381280/93‑1 (MQ=255)
                                         ccTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCaaa                                              >  2:2234101/1‑93 (MQ=255)
                                         ccTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCaaa                                              <  2:3617330/93‑1 (MQ=255)
                                           tctctTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGc                                            >  2:4434766/1‑93 (MQ=255)
                                             tcttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGt                                          >  2:4636334/1‑93 (MQ=255)
                                             tcttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGt                                          >  1:4164887/1‑93 (MQ=255)
                                             tcttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGt                                          >  2:2661446/1‑93 (MQ=255)
                                               ttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaa                                        >  1:4582966/1‑93 (MQ=255)
                                               ttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaa                                        >  2:1525349/1‑93 (MQ=255)
                                               ttctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaa                                        >  2:4454325/1‑93 (MQ=255)
                                                tctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaaa                                       >  2:975254/1‑93 (MQ=255)
                                                tctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaaa                                       >  1:993745/1‑93 (MQ=255)
                                                tctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaaa                                       >  1:1626329/1‑93 (MQ=255)
                                                 ctGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTaaaa                                      <  2:822666/93‑1 (MQ=255)
                                                   gACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAata                                    <  1:3533526/93‑1 (MQ=255)
                                                   gACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAata                                    <  2:3084464/93‑1 (MQ=255)
                                                     ctgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAtata                                  <  2:1084111/93‑1 (MQ=255)
                                                     ctgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAtata                                  <  2:2290520/93‑1 (MQ=255)
                                                     ctgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAtata                                  <  2:4214852/93‑1 (MQ=255)
                                                     ctgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAAtata                                  <  2:422058/93‑1 (MQ=255)
                                                      tgctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATaa                                 <  1:60210/93‑1 (MQ=255)
                                                       gctgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAAt                                <  2:1934729/93‑1 (MQ=255)
                                                         tgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGa                              >  1:772505/1‑93 (MQ=255)
                                                         tgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGa                              >  1:2612754/1‑93 (MQ=255)
                                                         tgAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGa                              <  2:1821401/93‑1 (MQ=255)
                                                          gAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGac                             >  2:1133046/1‑93 (MQ=255)
                                                          gAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGac                             >  2:3787159/1‑93 (MQ=255)
                                                          gAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGac                             >  1:2128344/1‑93 (MQ=255)
                                                          gAACAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGac                             >  1:571123/1‑93 (MQ=255)
                                                           aaCAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGacc                            <  1:1703396/93‑1 (MQ=255)
                                                            aCAAAGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGacca                           >  1:2059250/1‑93 (MQ=255)
                                                              aaaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGaccacc                         >  1:4164513/1‑93 (MQ=255)
                                                               aaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAccacca                        <  2:1024762/93‑1 (MQ=255)
                                                               aaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAccacca                        <  1:3347096/93‑1 (MQ=255)
                                                               aaGTTCTCTACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGAccacca                        >  2:3659235/1‑93 (MQ=255)
                                                                     tctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGaa                  >  1:4354269/1‑93 (MQ=255)
                                                                     tctACTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGaa                  <  1:4055697/93‑1 (MQ=255)
                                                                        aCTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCt               >  2:4009409/1‑93 (MQ=255)
                                                                        aCTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCt               >  2:1495525/1‑93 (MQ=255)
                                                                        aCTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCt               <  2:3739000/93‑1 (MQ=255)
                                                                        aCTTCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCt               >  1:1132803/1‑93 (MQ=255)
                                                                          ttCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTTCGCTCGTTATCAAAGCGGAAAATATAATGACCAACATTCGAATCTGt             >  2:1295819/1‑93 (MQ=255)
                                                                           tCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTa            <  2:1058834/93‑1 (MQ=255)
                                                                           tCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTa            >  2:2971732/1‑93 (MQ=255)
                                                                           tCAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTa            <  1:3967451/93‑1 (MQ=255)
                                                                            cAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTAt           >  1:1548877/1‑93 (MQ=255)
                                                                            cAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTAt           <  2:2428402/93‑1 (MQ=255)
                                                                            cAACGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTAt           >  2:2125973/1‑93 (MQ=255)
                                                                             aaCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATg          <  1:562784/93‑1 (MQ=255)
                                                                              aCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGc         >  2:3929047/1‑93 (MQ=255)
                                                                              aCGATATTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGc         >  2:2130737/1‑93 (MQ=255)
                                                                                 atatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCaaa      >  1:3893391/1‑93 (MQ=255)
                                                                                  tatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATGTAATGACCACCATTCGAATCTGTATGCAAAc     >  1:2074706/1‑93 (MQ=255)
                                                                                  tatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAc     <  2:2589803/93‑1 (MQ=255)
                                                                                  tatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAc     >  1:2147686/1‑93 (MQ=255)
                                                                                  tatTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAAc     <  1:757257/93‑1 (MQ=255)
                                                                                   atTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACt    >  1:2725451/1‑93 (MQ=255)
                                                                                   atTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACt    >  1:1527555/1‑93 (MQ=255)
                                                                                   atTGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACt    >  1:2280309/1‑93 (MQ=255)
                                                                                    ttGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTa   >  1:2778344/1‑93 (MQ=255)
                                                                                    ttGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTa   >  2:3001199/1‑93 (MQ=255)
                                                                                     tGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTaa  <  1:759819/93‑1 (MQ=255)
                                                                                     tGGCTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGGTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTaa  <  1:565332/93‑1 (MQ=255)
                                                                                        |                                                                                         
TCCAGGTAGCGTTTCACTTCCTGCGTAAAGGCGCTACCCCGCCTCTCTTCTGACTGCTGAACAAAGTTCTCTACTTCAACGATATTGGTTTCCATGATTCTTCGCCTTTGGTTTGTTTTCCGCTCGTTATCAAAGCGTAAAATATAATGACCACCATTCGAATCTGTATGCAAACTAA  >  NC_000913/1358838‑1359015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: