BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,490,230	T→C	intergenic (‑77/‑264)	b1420 ← / → trg	hypothetical protein/methyl‑accepting chemotaxis protein III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,490,230	0	T	C	100.0%	313.5 / NA	100	intergenic (‑77/‑264)	b1420/trg	hypothetical protein/methyl‑accepting chemotaxis protein III
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (44/56); total (44/56)

Only 100 of 104 total aligned reads displayed.

ATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCG  >  NC_000913/1490140‑1490319

aTTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGTCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGcct                                                                                         <  1:185103/93‑1 (MQ=255)

aTTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGcct                                                                                         >  2:1330533/1‑93 (MQ=255)

 ttGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGcctc                                                                                        <  1:2042871/93‑1 (MQ=255)

  tGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCa                                                                                       <  2:1467275/93‑1 (MQ=255)

   tcTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAg                                                                                      <  1:3630643/92‑1 (MQ=255)

     tAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGc                                                                                    >  1:3746301/1‑93 (MQ=255)

     tAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGc                                                                                    >  1:2888383/1‑93 (MQ=255)

     tAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGc                                                                                    <  2:4331964/93‑1 (MQ=255)

      aGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCa                                                                                   <  1:1260829/93‑1 (MQ=255)

        gTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCAcc                                                                                 >  1:1839776/1‑93 (MQ=255)

         ttCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCAccc                                                                                >  2:2932911/1‑93 (MQ=255)

         ttCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCAccc                                                                                >  2:467842/1‑93 (MQ=255)

            aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCa                                                                             <  2:1124442/93‑1 (MQ=255)

            aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCa                                                                             <  2:2436013/93‑1 (MQ=255)

             ttCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAg                                                                            <  1:2327067/93‑1 (MQ=255)

              tCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAgg                                                                           >  2:1554740/1‑93 (MQ=255)

               cGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGc                                                                          <  2:2030091/93‑1 (MQ=255)

                gTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCa                                                                         <  2:1957268/93‑1 (MQ=255)

                gTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCa                                                                         <  2:1185336/93‑1 (MQ=255)

                 ttGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCAt                                                                        >  1:4593797/1‑93 (MQ=255)

                  tGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATc                                                                       <  1:3065819/93‑1 (MQ=255)

                  tGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATc                                                                       <  1:1313362/93‑1 (MQ=255)

                   ggCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATcc                                                                      >  1:2925817/1‑93 (MQ=255)

                    gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCt                                                                     >  2:4016055/1‑93 (MQ=255)

                    gCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCt                                                                     <  2:2292866/93‑1 (MQ=255)

                     ccTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTa                                                                    <  1:2666842/93‑1 (MQ=255)

                     ccTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTa                                                                    >  1:4335687/1‑93 (MQ=255)

                      cTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTAt                                                                   >  2:861569/1‑93 (MQ=255)

                      cTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTAt                                                                   >  1:1521419/1‑93 (MQ=255)

                       tCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATg                                                                  >  2:4001430/1‑93 (MQ=255)

                       tCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATg                                                                  <  1:1540832/93‑1 (MQ=255)

                        cGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGa                                                                 <  2:3268494/93‑1 (MQ=255)

                        cGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGa                                                                 <  2:3719292/93‑1 (MQ=255)

                         ggTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAg                                                                <  1:646870/93‑1 (MQ=255)

                          gTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAgg                                                               >  1:3681/1‑93 (MQ=255)

                          gTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAgg                                                               >  1:3633874/1‑93 (MQ=255)

                           ttGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGt                                                              <  1:3384121/93‑1 (MQ=255)

                            tGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGtt                                                             <  2:4029952/93‑1 (MQ=255)

                            tGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGtt                                                             >  2:374309/1‑93 (MQ=255)

                             gATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGttt                                                            <  2:1722047/93‑1 (MQ=255)

                             gATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATCCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGttt                                                            <  2:2683941/93‑1 (MQ=255)

                              aTAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTc                                                           >  2:779754/1‑93 (MQ=255)

                              aTAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTc                                                           <  2:2918668/93‑1 (MQ=255)

                               tAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTcc                                                          <  2:3622562/93‑1 (MQ=255)

                               tAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTcc                                                          >  2:1645662/1‑93 (MQ=255)

                                 gAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCtt                                                        >  1:675222/1‑93 (MQ=255)

                                   aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAg                                                      <  2:3551939/93‑1 (MQ=255)

                                   aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAg                                                      >  2:1445949/1‑93 (MQ=255)

                                   aaTATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAg                                                      <  2:4560652/93‑1 (MQ=255)

                                    atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAgg                                                     <  2:3772970/93‑1 (MQ=255)

                                    atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAgg                                                     <  2:3776380/93‑1 (MQ=255)

                                    atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAgg                                                     >  1:1080211/1‑93 (MQ=255)

                                     tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAggg                                                    >  2:3334539/1‑93 (MQ=255)

                                      atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGa                                                   <  2:1101970/93‑1 (MQ=255)

                                      atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGa                                                   >  2:10866/1‑93 (MQ=255)

                                       tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAc                                                  <  1:1167056/93‑1 (MQ=255)

                                       tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGAAc                                                  <  2:2889010/93‑1 (MQ=255)

                                          gtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGaa                                               >  2:4496167/1‑93 (MQ=255)

                                           tgggggCGTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGaaa                                              <  2:4435056/91‑1 (MQ=255)

                                           tcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGaaa                                              <  2:3749705/93‑1 (MQ=255)

                                            cggGCCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGaaaa                                             <  1:3632121/93‑1 (MQ=255)

                                              gggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaata                                           >  2:1494447/1‑93 (MQ=255)

                                               ggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaataa                                          >  1:1522160/1‑93 (MQ=255)

                                                  cTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCa                                       >  1:4080711/1‑93 (MQ=255)

                                                   ttCATCTTTCTGATTCCCGGCTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAc                                      >  2:4341985/1‑93 (MQ=255)

                                                    tCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACt                                     >  2:1736926/1‑93 (MQ=255)

                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                   >  1:3134011/1‑93 (MQ=255)

                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                   >  1:2789283/1‑93 (MQ=255)

                                                       tCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCa                                  >  2:3443107/1‑93 (MQ=255)

                                                        cTTTCTGATGCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCAc                                 <  2:3807604/93‑1 (MQ=255)

                                                         tttCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACg                                <  1:3911334/93‑1 (MQ=255)

                                                           tCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGaa                              <  2:658623/93‑1 (MQ=255)

                                                           tCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGaa                              <  1:1304150/93‑1 (MQ=255)

                                                            cTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGaaa                             <  2:1146697/93‑1 (MQ=255)

                                                             tGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAt                            <  2:1654286/93‑1 (MQ=255)

                                                             tGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAt                            <  1:545579/93‑1 (MQ=255)

                                                              gATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAtt                           <  2:2844133/93‑1 (MQ=255)

                                                              gATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAtt                           >  2:1851299/1‑93 (MQ=255)

                                                               aTTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTg                          <  1:356289/93‑1 (MQ=255)

                                                                  cccGGTTAGCCTG‑AAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTg                      <  1:3231352/93‑1 (MQ=255)

                                                                     ggTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCt                    <  1:4445910/93‑1 (MQ=255)

                                                                      gTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTg                   >  2:3196527/1‑93 (MQ=255)

                                                                       ttAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGt                  >  2:867467/1‑93 (MQ=255)

                                                                         aGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGtct                <  2:4618127/93‑3 (MQ=255)

                                                                          gCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGtttt               >  1:3495632/1‑93 (MQ=255)

                                                                          gCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGtttt               <  2:2749667/93‑1 (MQ=255)

                                                                            cTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTcc             >  1:122626/1‑93 (MQ=255)

                                                                              gAAAACAGAGAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAg           <  2:2388350/93‑1 (MQ=255)

                                                                              gAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAg           >  1:2976738/1‑93 (MQ=255)

                                                                              gAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAg           >  1:446020/1‑93 (MQ=255)

                                                                              gAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAg           >  1:4638518/1‑93 (MQ=255)

                                                                              gAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAg           <  2:2403042/93‑1 (MQ=255)

                                                                               aaaaCAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGa          <  1:1671314/93‑1 (MQ=255)

                                                                                aaaCAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGaa         <  1:3370497/93‑1 (MQ=255)

                                                                                 aaCAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAt        <  2:3208513/93‑1 (MQ=255)

                                                                                    aGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAtttt     >  1:270262/1‑93 (MQ=255)

                                                                                    aGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAtttt     >  2:157555/1‑93 (MQ=255)

                                                                                       aaGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCg  >  2:2834793/1‑93 (MQ=255)

                                                                                       aaGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCg  <  1:3985623/93‑1 (MQ=255)

                                                                                       aaGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCg  <  2:1160262/93‑1 (MQ=255)

ATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTCG  >  NC_000913/1490140‑1490319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`