BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,490,510	C→T	S6L (TCA→TTA)	trg →	methyl‑accepting chemotaxis protein III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,490,510	0	C	T	100.0%	342.8 / NA	96	S6L (TCA→TTA)	trg	methyl‑accepting chemotaxis protein III
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (46/50); total (46/50)

Only 100 of 101 total aligned reads displayed.

TTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTCACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTT  >  NC_000913/1490420‑1490599

tttGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTtac                                                                                         <  2:3334782/93‑1 (MQ=255)

tttGGTCATAAGTAATTACCGTCAAGTGCCGATCACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTtac                                                                                         >  2:1184056/1‑93 (MQ=255)

 ttGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTtaca                                                                                        <  2:3235555/93‑1 (MQ=255)

  tGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAg                                                                                       >  1:1279527/1‑93 (MQ=255)

     tCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGa                                                                                    <  2:446020/93‑1 (MQ=255)

     tCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGa                                                                                    >  2:4250943/1‑93 (MQ=255)

     tCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGa                                                                                    <  2:4080711/93‑1 (MQ=255)

       aTAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGAtt                                                                                  <  1:4016055/93‑1 (MQ=255)

        tAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTa                                                                                 <  2:3931106/93‑1 (MQ=255)

         aaGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAg                                                                                <  1:2277300/93‑1 (MQ=255)

          aGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAgg                                                                               >  2:2173262/1‑93 (MQ=255)

          aGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAgg                                                                               >  2:2173263/1‑93 (MQ=255)

            tAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGtt                                                                             <  2:122626/93‑1 (MQ=255)

             aaTTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttt                                                                            <  1:3239644/93‑1 (MQ=255)

              aTTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGtttt                                                                           <  2:2976738/93‑1 (MQ=255)

               ttACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttttt                                                                          >  2:3121772/1‑93 (MQ=255)

               ttACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttttt                                                                          >  2:4557138/1‑93 (MQ=255)

               ttACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttttt                                                                          <  2:1522160/93‑1 (MQ=255)

               ttACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGttttt                                                                          >  2:606813/1‑93 (MQ=255)

                     tCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatc                                                                    <  2:1733550/93‑1 (MQ=255)

                     tCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatc                                                                    <  1:3443107/93‑1 (MQ=255)

                       aaGTGCCGAGGACTTTCTATCAGGAGTAAACCTGGACTAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcac                                                                  <  2:675222/93‑1 (MQ=255)

                        aGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcaca                                                                 >  2:3005097/1‑93 (MQ=255)

                          tGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGcatcacatc                                                               >  2:3923690/1‑93 (MQ=255)

                             ctaTGACTTTCTATCAGGAGTAACCCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAgg                                                            <  1:2429967/91‑1 (MQ=255)

                              gATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggt                                                           >  2:1355426/1‑93 (MQ=255)

                               ataaCTTACTATCAGGAGTAAACCTAGACGAGCGACATCGGTAATGACTACCTCTCCCTTACAGCGATTAGGTTTTTTGCATCACCTCAggtt                                                          <  2:4681946/90‑1 (MQ=255)

                               aTGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggtt                                                          <  2:751670/93‑1 (MQ=255)

                                tGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttg                                                         >  1:3013935/1‑93 (MQ=255)

                                 gACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttgg                                                        <  2:1078491/93‑1 (MQ=255)

                                  aCTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttggt                                                       <  1:10866/93‑1 (MQ=255)

                                   cTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAggttggtt                                                      >  1:3749412/1‑93 (MQ=255)

                                    tttCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTc                                                     <  2:1883601/93‑1 (MQ=255)

                                     ttCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTcc                                                    >  1:2300775/1‑93 (MQ=255)

                                       cTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGt                                                  <  1:867467/93‑1 (MQ=255)

                                       cTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGt                                                  >  1:4229815/1‑93 (MQ=255)

                                        tATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGtt                                                 <  2:2189065/93‑1 (MQ=255)

                                         ttCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATGCAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                <  1:3405263/92‑1 (MQ=255)

                                         aTCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGttt                                                >  1:1323818/1‑92 (MQ=255)

                                         aTCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                <  1:1736926/93‑1 (MQ=255)

                                         aTCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                <  2:270262/93‑1 (MQ=255)

                                         aTCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTa                                                >  1:1323817/1‑93 (MQ=255)

                                          tCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAt                                               >  1:3858696/1‑93 (MQ=255)

                                          tCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAt                                               <  1:1028418/93‑1 (MQ=255)

                                           cAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAtt                                              >  2:443768/1‑93 (MQ=255)

                                            agaaGTAAACCTGGACGAGAGACAACGGTAATGAATACAGCTCTCTTACGGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAttt                                             <  2:4621309/90‑1 (MQ=255)

                                            aGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAttt                                             >  1:3693354/1‑93 (MQ=255)

                                            aGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAttt                                             >  2:3604870/1‑93 (MQ=255)

                                            aGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAttt                                             <  1:3137456/93‑1 (MQ=255)

                                            aGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTAttt                                             >  1:3181539/1‑93 (MQ=255)

                                                 tAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTg                                        <  2:2539184/93‑1 (MQ=255)

                                                     ccTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCAtt                                    <  2:557968/93‑1 (MQ=255)

                                                      cTGGACGAGAGACAACGGTAATGAATGCAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTc                                   >  1:1634157/1‑93 (MQ=255)

                                                      cTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTc                                   >  1:1009301/1‑93 (MQ=255)

                                                      cTGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTc                                   >  1:3124305/1‑93 (MQ=255)

                                                       tGGACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCt                                  >  1:987226/1‑93 (MQ=255)

                                                         gACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAg                                >  2:3802183/1‑93 (MQ=255)

                                                         gACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAg                                <  2:1713881/93‑1 (MQ=255)

                                                         gACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAg                                <  1:2048540/93‑1 (MQ=255)

                                                         gACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAg                                <  1:2189372/93‑1 (MQ=255)

                                                         gACGAGAGACAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAg                                <  1:4585768/93‑1 (MQ=255)

                                                            gagagaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCg                             >  2:3500456/1‑93 (MQ=255)

                                                            gagagaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCg                             >  2:2267526/1‑93 (MQ=255)

                                                              gagaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGt                           >  2:3549395/1‑93 (MQ=255)

                                                              gagaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGt                           >  1:4022010/1‑93 (MQ=255)

                                                               agaCAACGGTAATGAATACGACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTa                          <  2:4259515/93‑1 (MQ=255)

                                                               agaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTa                          <  1:2837052/93‑1 (MQ=255)

                                                                gaCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTAt                         >  1:1356940/1‑93 (MQ=255)

                                                                 aCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATc                        >  1:3628976/1‑93 (MQ=255)

                                                                 aCAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATc                        <  1:3261752/93‑1 (MQ=255)

                                                                  cAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCt                       >  1:2383092/1‑93 (MQ=255)

                                                                  cAACGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCt                       <  2:569632/93‑1 (MQ=255)

                                                                   aaCGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCtt                      >  1:4075505/1‑93 (MQ=255)

                                                                     cGGTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAg                    <  2:332502/93‑1 (MQ=255)

                                                                       gTAATGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGtt                  >  1:2896264/1‑93 (MQ=255)

                                                                        tAATGAATGCAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTc                 <  1:3383826/93‑1 (MQ=255)

                                                                          aTGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTa               <  1:1488997/93‑1 (MQ=255)

                                                                           tGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTAt              <  2:1907217/93‑1 (MQ=255)

                                                                           tGAATACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTAt              >  1:2644096/1‑93 (MQ=255)

                                                                             aaTACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTc            >  2:1053930/1‑93 (MQ=255)

                                                                              aTACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCg           <  1:154111/93‑1 (MQ=255)

                                                                               tACAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGc          >  2:2039209/1‑93 (MQ=255)

                                                                                aCAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCa         <  1:2834793/93‑1 (MQ=255)

                                                                                aCAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCa         <  1:1494447/93‑1 (MQ=255)

                                                                                 cAACTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAt        <  1:2490073/93‑1 (MQ=255)

                                                                                  aaCTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAtt       <  2:1611985/93‑1 (MQ=255)

                                                                                  aaCTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCAtt       <  1:3443305/93‑1 (MQ=255)

                                                                                   aCTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTa      >  2:728196/1‑93 (MQ=255)

                                                                                    cTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTaa     <  2:450774/93‑1 (MQ=255)

                                                                                    cTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTaa     <  2:3100324/93‑1 (MQ=255)

                                                                                    cTCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTaa     >  2:1634130/1‑93 (MQ=255)

                                                                                     tCCCTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAg    >  2:1312705/1‑93 (MQ=255)

                                                                                      cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   <  2:2061504/93‑1 (MQ=255)

                                                                                      cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   >  2:4185000/1‑93 (MQ=255)

                                                                                      cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   <  1:2382917/93‑1 (MQ=255)

                                                                                      cccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGt   >  1:3394663/1‑93 (MQ=255)

                                                                                       ccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGtt  >  2:1776372/1‑93 (MQ=255)

                                                                                       ccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGtt  >  2:1242868/1‑93 (MQ=255)

                                                                                       ccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGtt  >  1:3435456/1‑93 (MQ=255)

                                                                                       ccTTACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGtt  <  1:3140588/93‑1 (MQ=255)

TTTGGTCATAAGTAATTACCGTCAAGTGCCGATGACTTTCTATCAGGAGTAAACCTGGACGAGAGACAACGGTAATGAATACAACTCCCTCACAGCGATTAGGTTTTTTGCATCACATCAGGTTGGTTCCGTTATTTGCCTGCATTCTAGGCGGTATCTTAGTTCTATTCGCATTAAGTT  >  NC_000913/1490420‑1490599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`