Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,587,936 A→G R30R (CGT→CGC b1505 ← putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,587,9360AG99.2% 380.0 / ‑4.5 121R30R (CGT→CGCb1505putative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (54/66);  total (55/66)
Fisher's exact test for biased strand distribution p-value = 4.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.79e-01

Only 100 of 124 total aligned reads displayed.

TGACGTGTTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCACTCAT  >  NC_000913/1587846‑1588025
                                                                                          |                                                                                         
tGACGTGTTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACcgcg                                                                                         >  2:3414527/1‑93 (MQ=255)
tGACGTGTTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACcgcg                                                                                         >  1:4145799/1‑93 (MQ=255)
tGACGTGTTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACcgcg                                                                                         >  1:4388355/1‑93 (MQ=255)
  aCGTGTTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCt                                                                                       >  1:551889/1‑93 (MQ=255)
   cGTGTTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCtt                                                                                      <  1:1590859/93‑1 (MQ=255)
    gtgtTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTa                                                                                     >  1:1869992/1‑93 (MQ=255)
     tgtTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTAc                                                                                    >  1:3397434/1‑93 (MQ=255)
     tgtTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAAATGCTTATTTGTTCCTGACCGCGCTTAc                                                                                    <  2:429375/93‑1 (MQ=255)
      gtTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACt                                                                                   <  1:4307743/93‑1 (MQ=255)
        tCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGt                                                                                 <  2:3278357/93‑1 (MQ=255)
        tCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGt                                                                                 <  1:3082110/93‑1 (MQ=255)
         ccAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTa                                                                                <  2:4297266/93‑1 (MQ=255)
         ccAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTa                                                                                >  2:4669425/1‑93 (MQ=255)
           aGTACCTTTGGCGAGTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGa                                                                              <  2:1663380/93‑1 (MQ=255)
           aGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGa                                                                              >  1:272651/1‑93 (MQ=255)
           aGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTCCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGa                                                                              <  2:4622545/93‑1 (MQ=255)
            gTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGaa                                                                             >  1:3682691/1‑93 (MQ=255)
            gTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGaa                                                                             <  2:929983/93‑1 (MQ=255)
             tAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAAc                                                                            <  2:3232848/93‑1 (MQ=255)
                cTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGa                                                                         <  1:2354272/93‑1 (MQ=255)
                cTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGa                                                                         <  1:1221530/93‑1 (MQ=255)
                cTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGa                                                                         <  1:3202046/93‑1 (MQ=255)
                 tttGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGAt                                                                        <  1:1733686/93‑1 (MQ=255)
                 tttGGCGACTGGCACTGAAAAATATCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTGCCTGACCGCGCTTACTGTAGAACAGAt                                                                        <  2:4335657/93‑1 (MQ=255)
                  ttGGCGACTGGCAATGAAAAATGTCGTACCGTAGTTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGAtt                                                                       <  1:1459825/93‑1 (MQ=255)
                    ggCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTaa                                                                     <  1:3786627/93‑1 (MQ=255)
                    ggCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTaa                                                                     <  1:1250820/93‑1 (MQ=255)
                       gACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAaat                                                                  >  2:4006537/1‑93 (MQ=255)
                         cTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAaataa                                                                <  1:601703/93‑1 (MQ=255)
                          tGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAaataat                                                               <  2:2128099/93‑1 (MQ=255)
                          tGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAaataat                                                               <  1:4041484/93‑1 (MQ=255)
                          tGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAaataat                                                               <  2:356158/93‑1 (MQ=255)
                           tgCACTGAAAAATGTCGTAGCGTAATTTCCAAGCTGCTGAGCGATGCTTATTTGTCCCGGACCGCGCTTACTGTAGAACAGATTAAAATAATc                                                              <  2:1592322/92‑1 (MQ=255)
                           ggCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATc                                                              <  1:1412180/93‑1 (MQ=255)
                           ggCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATc                                                              >  1:3845958/1‑93 (MQ=255)
                             cACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCaa                                                            <  2:1050311/93‑1 (MQ=255)
                             cACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCaa                                                            <  2:590886/93‑1 (MQ=255)
                             cACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCaa                                                            <  1:97772/93‑1 (MQ=255)
                               cTGAAAAATGTCGTGCCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGCCCGCTCTTACTGTAGAACAGATTAAAATAATCAATa                                                          <  2:4483514/93‑1 (MQ=255)
                               cTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATa                                                          >  2:1265115/1‑93 (MQ=255)
                                tGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATACTCAATaa                                                         <  2:3803375/93‑1 (MQ=255)
                                tGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATaa                                                         >  1:2156229/1‑93 (MQ=255)
                                tGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATaa                                                         >  1:3215768/1‑93 (MQ=255)
                                 gAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATaaa                                                        >  2:2032525/1‑93 (MQ=255)
                                   aaaaTGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAAtt                                                      <  2:3914626/93‑1 (MQ=255)
                                    aaaTGTCTTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGCCCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATtg                                                     <  2:1924338/93‑1 (MQ=255)
                                    aaaTGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATtg                                                     <  2:1195387/93‑1 (MQ=255)
                                        gTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTc                                                 <  2:3625384/93‑1 (MQ=255)
                                         tCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCt                                                <  1:1933864/93‑1 (MQ=255)
                                            tACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCt                                             >  1:3152384/1‑93 (MQ=255)
                                             aCCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTc                                            >  2:1190367/1‑93 (MQ=255)
                                              ccGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCa                                           <  2:3030870/93‑1 (MQ=255)
                                              ccGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCa                                           >  2:2791125/1‑93 (MQ=255)
                                              ccGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCa                                           >  2:1200185/1‑93 (MQ=255)
                                                gTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTTGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCAtt                                         >  1:3683388/1‑93 (MQ=255)
                                                gTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCAtt                                         <  1:655113/93‑1 (MQ=255)
                                                gTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCAtt                                         >  1:4521867/1‑93 (MQ=255)
                                                    tttCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGgtg                                     >  2:4008365/1‑93 (MQ=255)
                                                    tttCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGgtg                                     <  1:2454579/93‑1 (MQ=255)
                                                    tttCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGgtg                                     >  1:2127787/1‑93 (MQ=255)
                                                     ttCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGgtgt                                    <  1:1456990/93‑1 (MQ=255)
                                                      tCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGtc                                   >  1:1080257/1‑93 (MQ=255)
                                                      tCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGtc                                   >  1:1862776/1‑93 (MQ=255)
                                                      tCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGtc                                   <  1:1590802/93‑1 (MQ=255)
                                                       ccAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGtct                                  >  2:3103043/1‑93 (MQ=255)
                                                       ccAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGtct                                  <  2:2332910/93‑1 (MQ=255)
                                                        cAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGtctc                                 <  2:4136102/93‑1 (MQ=255)
                                                         aaGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTcc                                >  2:1329818/1‑93 (MQ=255)
                                                         aaGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTcc                                >  1:2183467/1‑93 (MQ=255)
                                                         aaGCTGCTGAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTcc                                <  1:165196/93‑1 (MQ=255)
                                                            ctgctgAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGt                             >  2:2928038/1‑93 (MQ=255)
                                                             tgctgAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTa                            <  1:1653305/93‑1 (MQ=255)
                                                                tgAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTagga                         <  1:1108452/93‑1 (MQ=255)
                                                                tgAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTagga                         >  2:751216/1‑93 (MQ=255)
                                                                tgAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTagga                         <  2:2955065/93‑1 (MQ=255)
                                                                tgAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTagga                         >  1:3220724/1‑93 (MQ=255)
                                                                tgAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTagga                         >  2:2389916/1‑93 (MQ=255)
                                                                tgAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTagga                         <  2:1420318/93‑1 (MQ=255)
                                                                tgAGAGATGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTagga                         <  1:3349521/93‑1 (MQ=255)
                                                                 gagagaTGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTaggag                        <  1:426630/93‑1 (MQ=255)
                                                                 gagagaTGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTaggag                        >  2:765257/1‑93 (MQ=255)
                                                                 gagagaTGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTaggag                        >  2:2389646/1‑93 (MQ=255)
                                                                     gaTGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGNTNATTGGTGTCTCCGNTAGGAGGCtt                    >  2:1857571/1‑93 (MQ=255)
                                                                       tGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGa                  >  2:3821464/1‑93 (MQ=255)
                                                                       tGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGa                  >  1:1557110/1‑93 (MQ=255)
                                                                       tGCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGa                  <  2:2487319/93‑1 (MQ=255)
                                                                        gCTTATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGAc                 <  1:297360/93‑1 (MQ=255)
                                                                          ttATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACgg               <  2:2163773/93‑1 (MQ=255)
                                                                          ttATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACgg               >  1:3170921/1‑93 (MQ=255)
                                                                          ttATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACgg               >  1:4348620/1‑93 (MQ=255)
                                                                           tATTTGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGgt              <  2:718289/93‑1 (MQ=255)
                                                                             tttGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGgtgt            <  1:1154986/93‑1 (MQ=255)
                                                                             tttGTTCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGgtgt            >  1:3909281/1‑93 (MQ=255)
                                                                                 ttCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAAcc        >  2:425325/1‑93 (MQ=255)
                                                                                  tCCTGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCa       >  1:1989732/1‑93 (MQ=255)
                                                                                     tGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCACTc    >  1:2590567/1‑93 (MQ=255)
                                                                                     tGACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCACTc    >  2:2021765/1‑93 (MQ=255)
                                                                                      gACCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCACTCa   >  2:1470623/1‑93 (MQ=255)
                                                                                       aCCGCGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCACTCAt  <  2:2672111/93‑1 (MQ=255)
                                                                                       aCCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCACTCAt  >  1:4050470/1‑93 (MQ=255)
                                                                                          |                                                                                         
TGACGTGTTCCAGTAACTTTGGCGACTGGCACTGAAAAATGTCGTACCGTAATTTCCAAGCTGCTGAGAGATGCTTATTTGTTCCTGACCACGCTTACTGTAGAACAGATTAAAATAATCAATAAATTGTGTCTGCTCATTGGTGTCTCCGGTAGGAGGCTTGACGGTGTAACCACTCAT  >  NC_000913/1587846‑1588025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: