BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,590,121	T→C	K27R (AAG→AGG)	hipA ←	HipA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,590,121	0	T	C	100.0%	339.0 / NA	105	K27R (AAG→AGG)	hipA	HipA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (44/61); total (44/61)

Only 100 of 119 total aligned reads displayed.

ACGGCATCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACTTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCA  >  NC_000913/1590031‑1590210

aCGGCATCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGGGCATACCTa                                                                                         >  2:2365299/1‑93 (MQ=255)

 cGGCATCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCCGTGCATACCTaa                                                                                        >  1:2516791/1‑93 (MQ=255)

  ggCATCAGAGGTGATATTCCCCCTCTGCAATTGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTaaa                                                                                       <  2:1633414/93‑1 (MQ=255)

   gCATCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAg                                                                                      <  1:2581295/93‑1 (MQ=255)

    cATCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAgg                                                                                     <  1:3973962/93‑1 (MQ=255)

    cATCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAgg                                                                                     <  2:3483220/93‑1 (MQ=255)

    cATCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAgg                                                                                     <  1:1636463/93‑1 (MQ=255)

     aTCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGgt                                                                                    <  1:142490/93‑1 (MQ=255)

     aTCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGgt                                                                                    <  1:1979452/93‑1 (MQ=255)

     aTCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGGGCATACCTAAAAgt                                                                                    >  2:4026158/1‑93 (MQ=255)

      tCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTCAAGgtg                                                                                   >  1:2680711/1‑93 (MQ=255)

      tCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAgggg                                                                                   >  1:3233147/1‑91 (MQ=255)

       cAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGgtgt                                                                                  <  1:4453598/93‑1 (MQ=255)

         gagGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAAACACTCCCGTGCATACCTAAAGGTGTgc                                                                                >  2:1071586/1‑93 (MQ=255)

           ggTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTgcgc                                                                              >  1:4581497/1‑93 (MQ=255)

            gTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTgcgcg                                                                             <  2:1888746/93‑1 (MQ=255)

             tGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTgcgcgc                                                                            <  1:403348/93‑1 (MQ=255)

             tGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAAACACTCCGGTGCATACCTAAAGGGGTgcgcgc                                                                            >  2:3115832/1‑93 (MQ=255)

              gATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGcc                                                                           <  1:4467087/93‑1 (MQ=255)

                tatTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGt                                                                         <  1:3275703/93‑1 (MQ=255)

                 atTCCCTCTCTGCAATGGCAGCGAAAGTGACAACCGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGtt                                                                        <  2:4358328/93‑1 (MQ=255)

                 atTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGtt                                                                        <  1:2938213/93‑1 (MQ=255)

                  ttCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTg                                                                       <  2:886339/93‑1 (MQ=255)

                   tCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAGACACTCCGCGCCATACCGAAAGGTGGGCGCGCCGCTgg                                                                      >  2:2128615/1‑93 (MQ=255)

                    cccccTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGc                                                                     >  2:4683535/1‑93 (MQ=255)

                     ccccTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCt                                                                    <  1:1032158/93‑1 (MQ=255)

                       ccTCTGCAATGGCATCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAAACACTCCGGTGCATACCTTAAGGTGTGCGCGCCGTTGGCtga                                                                  >  2:3195377/1‑91 (MQ=255)

                       ccTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTTGTAAACACTCCGGTGCATACCCAAAGGTGAGCGGCCCGTTgggtta                                                                  >  2:4146331/1‑89 (MQ=255)

                       ccTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCCGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTaa                                                                  >  1:2038551/1‑93 (MQ=255)

                         tctGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCCTACCTAAAGGTGTGCGCGCCGTTGGCTAACt                                                                >  1:2609723/1‑93 (MQ=255)

                          ctGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACtt                                                               <  2:1305075/93‑1 (MQ=255)

                             cAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGt                                                            <  2:9570/93‑1 (MQ=255)

                              aaTGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCCCTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGtt                                                           <  1:3420542/93‑1 (MQ=255)

                              aaTGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGtt                                                           >  2:2935248/1‑93 (MQ=255)

                              aaTGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGtt                                                           <  2:2290166/93‑1 (MQ=255)

                              aaTGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGtt                                                           >  1:3427700/1‑93 (MQ=255)

                               aTGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTa                                                          <  1:300997/93‑1 (MQ=255)

                               aTGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTa                                                          >  1:2224219/1‑93 (MQ=255)

                                tGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTaa                                                         >  1:1949107/1‑93 (MQ=255)

                                 ggCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAAc                                                        <  1:4058746/93‑1 (MQ=255)

                                 ggCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAAc                                                        <  2:3428020/93‑1 (MQ=255)

                                 ggCACCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAAc                                                        <  1:490981/93‑1 (MQ=255)

                                  gCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACt                                                       <  2:487399/93‑1 (MQ=255)

                                  gCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTACGGTGCATACCTAAAAGTGCGCGCGCCGTTGGGTAACCTCGTTAACt                                                       >  1:3600131/1‑93 (MQ=255)

                                    aGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCCCTCCGGTGCATACCTAAAGGGGTTCGCGCCGGTGGCTTACCTCGTTACCTcc                                                     >  2:1857709/1‑92 (MQ=255)

                                    aGCGAAAGGGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGTTGTGCGCGCCGTTGGCTAACTTCGTTAACTCg                                                     <  1:1629022/93‑1 (MQ=255)

                                     gCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGc                                                    >  1:2496926/1‑93 (MQ=255)

                                     gCGAAAGTAACAACGGTCTGGCATAACGGCTTGCTAACCACCCCGGCGGATACCTAAAGGCGTGCGCGCCGTTGGGTCACTTCGTTAACTCGc                                                    >  2:413301/1‑93 (MQ=255)

                                       gAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCt                                                  >  1:2574322/1‑93 (MQ=255)

                                        aaaGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTa                                                 <  1:1013532/93‑1 (MQ=255)

                                        aaaGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTa                                                 >  2:1193826/1‑93 (MQ=255)

                                          aGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTACCTTCGTTAACGCGCCTAcc                                               >  1:4409360/1‑93 (MQ=255)

                                             gACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGc                                            >  1:4236659/1‑93 (MQ=255)

                                             gACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGc                                            <  2:4309795/93‑1 (MQ=255)

                                             gACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGc                                            >  1:3020792/1‑93 (MQ=255)

                                              aCAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCt                                           <  1:2831245/93‑1 (MQ=255)

                                                 aCGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCCCCGgt                                        >  2:989804/1‑93 (MQ=255)

                                                  cGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGgtt                                       <  2:949100/93‑1 (MQ=255)

                                                    gTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGgttgt                                     >  2:1488302/1‑93 (MQ=255)

                                                     tCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACACGCCTACCCGCTGgttgtt                                    <  2:4545615/93‑1 (MQ=255)

                                                         gCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATc                                >  1:4479515/1‑93 (MQ=255)

                                                         gCATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATc                                >  1:2306586/1‑93 (MQ=255)

                                                          cATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATcc                               <  1:285154/93‑1 (MQ=255)

                                                          cATAACGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATcc                               <  2:280005/93‑1 (MQ=255)

                                                             aaCGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAg                            <  1:1638100/93‑1 (MQ=255)

                                                             aaCGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAg                            >  2:3706275/1‑93 (MQ=255)

                                                             aaCGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAg                            <  2:3427700/93‑1 (MQ=255)

                                                              aCGGCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCCAGt                           >  2:354593/1‑93 (MQ=255)

                                                                ggCTTGCTAACCACTCCGGTGCCTACCTTAAGGTGGGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTGGTTCATCCAAGTGa                         >  1:1457774/1‑93 (MQ=255)

                                                                 gCTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGAc                        >  1:1070061/1‑93 (MQ=255)

                                                                  cTTGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACa                       >  1:412978/1‑93 (MQ=255)

                                                                   ttGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACaa                      <  2:4652141/93‑1 (MQ=255)

                                                                   ttGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACaa                      >  2:3880746/1‑93 (MQ=255)

                                                                   ttGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACaa                      >  1:1188139/1‑93 (MQ=255)

                                                                   ttGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACaa                      <  1:3818024/93‑1 (MQ=255)

                                                                    tGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCTCCTACCCGCTGGTTGTTCATCCAAGTGACAAg                     <  2:2691327/93‑1 (MQ=255)

                                                                    tGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAg                     <  2:3738375/93‑1 (MQ=255)

                                                                    tGCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAg                     <  1:4114824/93‑1 (MQ=255)

                                                                     gCTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGt                    >  1:4365433/1‑93 (MQ=255)

                                                                      cTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGtt                   <  1:1486691/93‑1 (MQ=255)

                                                                      cTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGtt                   <  2:1744616/93‑1 (MQ=255)

                                                                      cTAACCACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGtt                   <  1:568412/93‑1 (MQ=255)

                                                                         aCCACTCCGGTGCATCCCTAAAGGTGTGCGCACCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAg                <  1:4680802/93‑1 (MQ=255)

                                                                           cACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGc              >  1:3071109/1‑93 (MQ=255)

                                                                           cACTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGc              <  1:3254234/93‑1 (MQ=255)

                                                                            aCTCCGGTGCATACCTAAAGGTGTGCGCTCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCa             <  1:791184/93‑1 (MQ=255)

                                                                            aCTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCa             <  1:2022715/93‑1 (MQ=255)

                                                                            aCTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCa             >  2:4637256/1‑93 (MQ=255)

                                                                             cTCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCAt            <  2:3580906/93‑1 (MQ=255)

                                                                              tCCGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCAtt           >  2:3667898/1‑93 (MQ=255)

                                                                               ccGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTa          <  2:3957309/93‑1 (MQ=255)

                                                                                cGGTGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTAc         >  1:1945610/1‑93 (MQ=255)

                                                                                   tGCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCAc      >  1:3187124/1‑93 (MQ=255)

                                                                                    gCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACt     >  1:3943299/1‑93 (MQ=255)

                                                                                    gCATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACt     <  1:4098460/93‑1 (MQ=255)

                                                                                     cATACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTc    >  1:3063375/1‑93 (MQ=255)

                                                                                       tACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCa  <  2:4242131/93‑1 (MQ=255)

                                                                                       tACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCa  >  1:1095943/1‑93 (MQ=255)

                                                                                       tACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCa  <  2:95386/93‑1 (MQ=255)

                                                                                       tACCTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCa  <  1:862703/93‑1 (MQ=255)

ACGGCATCAGAGGTGATATTCCCCCTCTGCAATGGCAGCGAAAGTGACAACGGTCTGGCATAACGGCTTGCTAACCACTCCGGTGCATACTTAAAGGTGTGCGCGCCGTTGGCTAACTTCGTTAACTCGCCTACCCGCTGGTTGTTCATCCAAGTGACAAGTTTAGGCATTACCACTCCA  >  NC_000913/1590031‑1590210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`