BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,690,777	T→C	L29L (CTA→CTG)	uidC ←	membrane‑associated protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,690,777	0	T	C	100.0%	201.7 / NA	66	L29L (CTA→CTG)	uidC	membrane‑associated protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (27/39); total (27/39)

AATCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGTAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACT  >  NC_000913/1690688‑1690864

aaTCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGt                                                                                      >  2:935025/1‑93 (MQ=255)

 aTCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTc                                                                                     >  1:125178/1‑93 (MQ=255)

 aTCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTc                                                                                     >  2:134419/1‑93 (MQ=255)

 aTCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTc                                                                                     >  2:1919186/1‑93 (MQ=255)

 aTCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTc                                                                                     >  2:3841436/1‑93 (MQ=255)

  acctccCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTcc                                                                                    <  1:276997/92‑1 (MQ=255)

   cctccCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTccc                                                                                   <  1:1305929/93‑1 (MQ=255)

     tccCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGc                                                                                 >  1:834930/1‑93 (MQ=255)

       ccTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCtt                                                                               <  2:3296828/93‑1 (MQ=255)

       ccTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCtt                                                                               >  2:3072303/1‑93 (MQ=255)

       ccTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCtt                                                                               <  2:795534/93‑1 (MQ=255)

         tGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCa                                                                             >  2:1589759/1‑93 (MQ=255)

          gTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCAt                                                                            <  1:2654720/93‑1 (MQ=255)

           tACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATc                                                                           <  2:513883/93‑1 (MQ=255)

           tACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATc                                                                           >  1:3769829/1‑93 (MQ=255)

            aCCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCg                                                                          >  1:2117900/1‑93 (MQ=255)

             cccATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGt                                                                         <  2:2760388/93‑1 (MQ=255)

             cccATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGt                                                                         >  1:152177/1‑93 (MQ=255)

              ccATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTc                                                                        <  2:2359862/93‑1 (MQ=255)

                   cGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCa                                                                   <  2:1627248/93‑1 (MQ=255)

                    gTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAg                                                                  >  2:1804091/1‑93 (MQ=255)

                     tAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGt                                                                 >  1:684089/1‑93 (MQ=255)

                     tAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGt                                                                 >  2:3458251/1‑93 (MQ=255)

                     tAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGt                                                                 <  1:68218/93‑1 (MQ=255)

                      aaaTATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGtt                                                                >  1:798976/1‑93 (MQ=255)

                       aaTATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTg                                                               <  2:1983221/93‑1 (MQ=255)

                        atatCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTgc                                                              <  2:3546919/93‑1 (MQ=255)

                        atatCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTgc                                                              >  2:2179455/1‑93 (MQ=255)

                          atCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTgcgc                                                            >  2:4157303/1‑93 (MQ=255)

                          atCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTgcgc                                                            <  1:3188401/93‑1 (MQ=255)

                              ctTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCa                                                        <  1:2812455/93‑1 (MQ=255)

                              ctTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCa                                                        <  2:1931906/93‑1 (MQ=255)

                                ccccGCGCTAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATa                                                      <  2:735265/92‑1 (MQ=255)

                                      gcCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCaga                                                <  1:1744509/93‑1 (MQ=255)

                                        cAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAgg                                              >  2:3097949/1‑93 (MQ=255)

                                         aGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGt                                             >  2:1465837/1‑93 (MQ=255)

                                         aGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGt                                             <  2:2442243/93‑1 (MQ=255)

                                          gCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTa                                            >  2:1504587/1‑93 (MQ=255)

                                           cACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTaa                                           <  2:4651689/93‑1 (MQ=255)

                                           cACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTaa                                           <  1:3413837/93‑1 (MQ=255)

                                            acagggCTTAGCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAg                                          <  2:689905/90‑1 (MQ=255)

                                            aCTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAg                                          <  2:2176750/93‑1 (MQ=255)

                                            aCTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAg                                          >  2:1134054/1‑93 (MQ=255)

                                            aCTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAg                                          <  1:2585850/93‑1 (MQ=255)

                                              tGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGc                                        <  2:4612748/93‑1 (MQ=255)

                                              tGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGc                                        <  1:1719467/93‑1 (MQ=255)

                                              tGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGc                                        <  2:2899373/93‑1 (MQ=255)

                                                 gCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCag                                     >  1:3282683/1‑93 (MQ=255)

                                                 gCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCag                                     <  2:1002384/93‑1 (MQ=255)

                                                     aTCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGc                                 <  1:743613/93‑1 (MQ=255)

                                                        cGCCCTGCGCATTTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCAGCGTAAGCCAGTTGCGCCGCATAAGAAGAGGTAAGGCCAGAGGCAGc                              <  2:2713667/93‑1 (MQ=255)

                                                            cTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTc                          <  2:3287029/93‑1 (MQ=255)

                                                             tGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCa                         <  2:2611868/93‑1 (MQ=255)

                                                             tGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCa                         <  1:3170294/93‑1 (MQ=255)

                                                              gcgcAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAg                        >  2:1838532/1‑93 (MQ=255)

                                                                gcAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGc                      >  1:919010/1‑93 (MQ=255)

                                                                gcAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGc                      >  2:4147719/1‑93 (MQ=255)

                                                                  aaTTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCaa                    >  2:2717587/1‑93 (MQ=255)

                                                                   aTTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATACGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCaaa                   <  1:1208600/93‑1 (MQ=255)

                                                                    ttCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAAt                  >  1:1251100/1‑93 (MQ=255)

                                                                     tCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATa                 <  2:2949529/93‑1 (MQ=255)

                                                                     tCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATa                 <  2:670011/93‑1 (MQ=255)

                                                                      cGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATaa                <  2:505575/93‑1 (MQ=255)

                                                                      cGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATaa                <  1:203224/93‑1 (MQ=255)

                                                                       gTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAAc               >  2:3640713/1‑93 (MQ=255)

                                                                       gTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAAc               <  1:548329/93‑1 (MQ=255)

                                                                                 cTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGcc     <  1:2814393/93‑1 (MQ=255)

                                                                                    aTGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACt  <  1:2882860/93‑1 (MQ=255)

AATCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGTAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACT  >  NC_000913/1690688‑1690864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`