BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,964,115	G→A	S34L (TCA→TTA)	flhB ←	FlhB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,964,115	0	G	A	100.0%	387.3 / NA	107	S34L (TCA→TTA)	flhB	FlhB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (49/58); total (49/58)

Only 100 of 111 total aligned reads displayed.

AGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTGAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGCTC  >  NC_000913/1964025‑1964204

aGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAg                                                                                         <  2:1806593/93‑1 (MQ=255)

aGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAg                                                                                         <  1:2627336/93‑1 (MQ=255)

aGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAg                                                                                         >  1:764853/1‑93 (MQ=255)

aGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAg                                                                                         >  2:3324043/1‑93 (MQ=255)

   ccAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTc                                                                                      <  1:707559/93‑1 (MQ=255)

   ccAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTc                                                                                      >  2:313330/1‑93 (MQ=255)

   ccAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTc                                                                                      >  1:1785435/1‑93 (MQ=255)

   ccAGCGGAGAGCATGCCCGAAAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTc                                                                                      <  2:555030/93‑1 (MQ=255)

    cAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCa                                                                                     <  1:3920432/93‑1 (MQ=255)

     aGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGCCAg                                                                                    >  1:3256634/1‑93 (MQ=255)

       cGGAGACCATCCCCGACAAGCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGGAAAATCAGCAGTAAGGTCAGtt                                                                                  <  2:1411409/93‑1 (MQ=255)

        ggAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTc                                                                                 >  1:3980688/1‑93 (MQ=255)

         gagaGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCa                                                                                <  1:4169405/93‑1 (MQ=255)

         gagaGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCa                                                                                >  2:3961340/1‑93 (MQ=255)

         gagaGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGGCAGTTCa                                                                                >  2:3046354/1‑93 (MQ=255)

          agagCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCAc                                                                               >  2:515190/1‑93 (MQ=255)

           gagCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACg                                                                              >  2:11854/1‑93 (MQ=255)

           gagCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACg                                                                              >  2:3212029/1‑93 (MQ=255)

            agCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACgg                                                                             <  2:3827060/93‑1 (MQ=255)

              cATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGa                                                                           <  1:2021555/93‑1 (MQ=255)

               ctGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGaa                                                                          <  2:3129601/92‑1 (MQ=255)

                tGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAc                                                                         >  1:2230133/1‑93 (MQ=255)

                tGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAc                                                                         <  2:2600075/93‑1 (MQ=255)

                tGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAc                                                                         >  2:762823/1‑93 (MQ=255)

                 gCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAcg                                                                        >  1:4244879/1‑93 (MQ=255)

                  cccGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAcgc                                                                       <  1:608940/93‑1 (MQ=255)

                  cccGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAcgc                                                                       <  2:3511976/93‑1 (MQ=255)

                  cccGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGCCAGTTCACGGGAAcgc                                                                       >  1:3011694/1‑93 (MQ=255)

                   ccGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAAcgcg                                                                      <  2:326523/93‑1 (MQ=255)

                    cGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCgg                                                                     >  2:2209004/1‑93 (MQ=255)

                    cGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCgg                                                                     <  1:1595667/93‑1 (MQ=255)

                     gACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCggg                                                                    <  2:859148/93‑1 (MQ=255)

                      aCAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGa                                                                   <  2:1764893/93‑1 (MQ=255)

                      aCAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGa                                                                   >  1:4248511/1‑93 (MQ=255)

                         aTCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGAttt                                                                >  2:1945500/1‑93 (MQ=255)

                         aTCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGAttt                                                                >  1:3218862/1‑93 (MQ=255)

                         aTCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGAttt                                                                <  2:2964746/93‑1 (MQ=255)

                         aTCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGAttt                                                                <  2:1029709/93‑1 (MQ=255)

                          tCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTg                                                               >  2:779500/1‑93 (MQ=255)

                          tCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTg                                                               >  2:2490695/1‑93 (MQ=255)

                           cGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGc                                                              <  1:4484288/93‑1 (MQ=255)

                             aCGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGccc                                                            <  2:184933/93‑1 (MQ=255)

                              cGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGcccc                                                           <  2:604843/93‑1 (MQ=255)

                                     gCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTccc                                                    <  2:4405739/93‑1 (MQ=255)

                                        acacacCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCcgcg                                                 >  1:2728419/1‑93 (MQ=255)

                                         cacacCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCgcgc                                                <  2:112199/93‑1 (MQ=255)

                                          acacCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCt                                               <  2:4586477/93‑1 (MQ=255)

                                            acCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCttt                                             >  1:1831398/1‑93 (MQ=255)

                                              cGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCttttt                                           <  1:2404360/93‑1 (MQ=255)

                                               gCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTc                                          <  1:3857785/93‑1 (MQ=255)

                                                ccAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCt                                         <  2:4153426/93‑1 (MQ=255)

                                                 cAAGCCAGATAACACTAGCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTa                                        <  1:4370738/93‑1 (MQ=255)

                                                 cAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTa                                        >  2:329717/1‑93 (MQ=255)

                                                 cAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTa                                        >  1:1141250/1‑93 (MQ=255)

                                                   aaCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGt                                      <  1:39468/93‑1 (MQ=255)

                                                   aaCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGt                                      <  1:3040078/93‑1 (MQ=255)

                                                   aaCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGt                                      >  1:4665701/1‑93 (MQ=255)

                                                   aaCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGt                                      <  1:3717714/93‑1 (MQ=255)

                                                    aCCAGATAACACTACCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCCCGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTc                                     <  1:249153/93‑1 (MQ=255)

                                                    aCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTc                                     >  2:3395289/1‑93 (MQ=255)

                                                    aCCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTc                                     <  1:1086230/93‑1 (MQ=255)

                                                       aGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGt                                  <  2:4613413/93‑1 (MQ=255)

                                                       aGATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGt                                  <  2:2869197/93‑1 (MQ=255)

                                                        gATAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTg                                 <  1:4645828/93‑1 (MQ=255)

                                                         aTAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGa                                <  1:3212029/93‑1 (MQ=255)

                                                         aTAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGa                                <  2:4028267/93‑1 (MQ=255)

                                                         aTAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGa                                <  1:629145/93‑1 (MQ=255)

                                                          tAACACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAg                               >  1:1284434/1‑93 (MQ=255)

                                                           aaCACTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTCTCTAGTCGGTGAgg                              >  1:2346442/1‑93 (MQ=255)

                                                            acacTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGCACGCGGGATTTGCCCCTCTTCCTGCGCTTTTTCTAGTCGGTGAGgt                             <  2:3780906/93‑1 (MQ=255)

                                                            acacTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGgt                             >  2:1161115/1‑93 (MQ=255)

                                                            acacTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGgt                             <  1:3896382/93‑1 (MQ=255)

                                                             cccTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCTCGCTTTTTCTAGTCGGTGAGgtg                            <  1:2144422/91‑1 (MQ=255)

                                                               cTAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGtgtg                          >  1:1736646/1‑93 (MQ=255)

                                                                tAACGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTgg                         >  2:1615842/1‑93 (MQ=255)

                                                                  aCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTgggg                       <  1:2213860/93‑1 (MQ=255)

                                                                  aCGCCCACCAGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTgggg                       <  1:230323/93‑1 (MQ=255)

                                                                      ccaccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCtt                   >  2:395244/1‑93 (MQ=255)

                                                                      ccaccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCtt                   >  1:2056617/1‑93 (MQ=255)

                                                                       caccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTc                  >  1:709873/1‑93 (MQ=255)

                                                                       caccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGGCGGTGAGGTGTGGGGGCTTc                  <  2:4438411/93‑1 (MQ=255)

                                                                         ccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTg                <  1:1782334/93‑1 (MQ=255)

                                                                         ccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTg                >  2:1458318/1‑93 (MQ=255)

                                                                         ccaGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTg                <  2:2137912/93‑1 (MQ=255)

                                                                          caGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGt               <  1:104136/93‑1 (MQ=255)

                                                                          caGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGt               <  2:2164704/93‑1 (MQ=255)

                                                                           aGCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCCTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGtt              >  2:433749/1‑93 (MQ=255)

                                                                            gCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGttt             >  2:1439031/1‑93 (MQ=255)

                                                                            gCAAAATCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGttt             >  1:1629521/1‑93 (MQ=255)

                                                                                aaTCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtc         >  1:890478/1‑93 (MQ=255)

                                                                                aaTCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtc         >  2:698184/1‑93 (MQ=255)

                                                                                 aTCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcg        >  2:1024204/1‑93 (MQ=255)

                                                                                  tCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcgt       >  1:3838815/1‑93 (MQ=255)

                                                                                  tCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcgt       <  2:2773966/93‑1 (MQ=255)

                                                                                  tCAGCAGTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcgt       <  1:3206989/93‑1 (MQ=255)

                                                                                   cagcagTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTgtcgtc      <  1:781586/93‑1 (MQ=255)

                                                                                    agcagTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGtcgtcg     >  1:2111489/1‑93 (MQ=255)

                                                                                     gcagTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGc    >  2:1289158/1‑93 (MQ=255)

                                                                                       agTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGctc  >  2:2646900/1‑93 (MQ=255)

                                                                                       agTAAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGctc  <  1:3665122/93‑1 (MQ=255)

AGCCCAGCGGAGAGCATGCCCGACAATCGACGGGCCAGCGACACACCGCCAAACCAGATAACACTAACGCCCACCAGCAAAATCAGCAGTGAGGTCAGTTCACGGGAACGCGGGATTTGCCCCTCTTCCCGCGCTTTTTCTAGTCGGTGAGGTGTGGGGGCTTCTGTTTTGTCGTCGCTC  >  NC_000913/1964025‑1964204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`