BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,990,667	C→T	Q58Q (CAG→CAA)	pgsA ←	phosphatidylglycerophosphate synthetase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,990,667	0	C	T	100.0%	421.8 / NA	118	Q58Q (CAG→CAA)	pgsA	phosphatidylglycerophosphate synthetase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (75/43); total (75/43)

Only 100 of 121 total aligned reads displayed.

GCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCA  >  NC_000913/1990577‑1990753

gCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTg                                                                                      >  2:2997227/1‑93 (MQ=255)

    tgATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTc                                                                                  <  2:492378/93‑1 (MQ=255)

     gATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAATTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTcc                                                                                 >  1:2511668/1‑93 (MQ=255)

      aTAATGCTCGGTTATCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCa                                                                                >  2:3264725/1‑93 (MQ=255)

      aTAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTccg                                                                                >  2:1881561/1‑92 (MQ=255)

      aTAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCa                                                                                >  1:1803891/1‑93 (MQ=255)

      aTAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCa                                                                                <  1:1836045/93‑1 (MQ=255)

            cTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAgcggcg                                                                          <  2:2929655/93‑1 (MQ=255)

            cTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAgcggcg                                                                          >  1:326721/1‑93 (MQ=255)

               ggTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGc                                                                       >  2:1427658/1‑93 (MQ=255)

                gTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGcc                                                                      <  2:5378/93‑1 (MQ=255)

                gTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGcc                                                                      >  1:804920/1‑93 (MQ=255)

                   aCCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCgaga                                                                   <  2:3111648/93‑1 (MQ=255)

                   aCCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGa                                                                   <  1:3070233/93‑1 (MQ=255)

                    ccAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGaa                                                                  >  1:2084091/1‑93 (MQ=255)

                     cAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGaaa                                                                 <  1:2350928/93‑1 (MQ=255)

                     cAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGaaa                                                                 >  1:776060/1‑93 (MQ=255)

                     cAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGaaa                                                                 <  1:3036091/93‑1 (MQ=255)

                      aGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCAGCGTGCCAGaaaa                                                                >  1:4568516/1‑93 (MQ=255)

                       gCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAAc                                                               >  2:1477408/1‑93 (MQ=255)

                       gCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAAc                                                               >  1:4241648/1‑93 (MQ=255)

                       gCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAAc                                                               <  2:2309146/93‑1 (MQ=255)

                       gCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAAc                                                               >  2:4273081/1‑93 (MQ=255)

                         aCCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCa                                                             >  2:163896/1‑93 (MQ=255)

                         aCCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCa                                                             <  1:1495061/93‑1 (MQ=255)

                          ccATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGACAACCAt                                                            >  1:1741778/1‑93 (MQ=255)

                          ccATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCAt                                                            >  1:76431/1‑93 (MQ=255)

                           cATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATc                                                           <  2:743020/93‑1 (MQ=255)

                           cATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATc                                                           >  1:4051858/1‑93 (MQ=255)

                           cATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATc                                                           >  1:930769/1‑93 (MQ=255)

                                 gATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACca                                                     >  2:309357/1‑93 (MQ=255)

                                 gATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACca                                                     >  2:1470101/1‑93 (MQ=255)

                                  aTAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGCACcag                                                    >  2:3317746/1‑93 (MQ=255)

                                  aTAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcag                                                    <  2:1097457/93‑1 (MQ=255)

                                  aTAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcag                                                    <  1:3433836/93‑1 (MQ=255)

                                  aTAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcag                                                    >  1:3138708/1‑93 (MQ=255)

                                     gCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtca                                                 >  1:3163420/1‑93 (MQ=255)

                                     gCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtca                                                 >  1:2381411/1‑93 (MQ=255)

                                     gCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtca                                                 >  2:2836740/1‑93 (MQ=255)

                                       cACGAGAACTTTATCTGCCACAGGGTGAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtcagt                                               <  2:3793078/93‑1 (MQ=255)

                                       cACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtcagt                                               >  1:670810/1‑93 (MQ=255)

                                       cACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtcagt                                               >  2:1443843/1‑93 (MQ=255)

                                        aCGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCagtcagtc                                              >  1:4130889/1‑93 (MQ=255)

                                        aCGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCagtcagtc                                              >  2:747339/1‑93 (MQ=255)

                                        aCGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCagtcagtc                                              >  1:2733452/1‑93 (MQ=255)

                                          gagaACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAc                                            >  2:3443750/1‑93 (MQ=255)

                                          gagaACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAc                                            >  2:4611333/1‑93 (MQ=255)

                                           agaACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAcc                                           <  2:503464/93‑1 (MQ=255)

                                             aaCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAccgc                                         >  2:464614/1‑93 (MQ=255)

                                              aCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAccgcc                                        >  2:3566711/1‑93 (MQ=255)

                                              aCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAccgcc                                        >  2:887939/1‑93 (MQ=255)

                                              aCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAccgcc                                        >  1:1482740/1‑93 (MQ=255)

                                                tttATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACcgccgc                                      >  2:1479554/1‑93 (MQ=255)

                                                tttATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACcgccgc                                      >  2:2415845/1‑93 (MQ=255)

                                                  tATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGa                                    >  2:4111165/1‑93 (MQ=255)

                                                  tATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGa                                    <  1:1546810/93‑1 (MQ=255)

                                                  tATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGa                                    >  2:2233904/1‑93 (MQ=255)

                                                    tCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACg                                  >  2:4003282/1‑93 (MQ=255)

                                                     cTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGc                                 <  1:2904778/93‑1 (MQ=255)

                                                      tGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCa                                >  1:1916096/1‑93 (MQ=255)

                                                         cacaGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaa                             >  2:3302757/1‑93 (MQ=255)

                                                          acaGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaaa                            >  1:1120805/1‑93 (MQ=255)

                                                          acaGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGACGCGACGCAGaca                            >  2:874321/1‑91 (MQ=255)

                                                          acaGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGAGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaaa                            >  2:2798544/1‑93 (MQ=255)

                                                           caGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaaaa                           <  1:4648137/93‑1 (MQ=255)

                                                             gggTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATg                         <  1:3232737/93‑1 (MQ=255)

                                                             gggCCAAGAAAACCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATg                         <  2:2078705/93‑1 (MQ=255)

                                                               gTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAg                       <  2:2629612/93‑1 (MQ=255)

                                                               gTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAg                       <  1:2991439/93‑1 (MQ=255)

                                                                tCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAgc                      >  1:987558/1‑93 (MQ=255)

                                                                tCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAgc                      >  1:2876285/1‑93 (MQ=255)

                                                                  aaGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAgcgc                    >  1:1370688/1‑93 (MQ=255)

                                                                  aaGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAgcgc                    >  1:3749858/1‑93 (MQ=255)

                                                                   aGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGCAAATGAGcgcg                   >  1:3700365/1‑93 (MQ=255)

                                                                   aGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcg                   >  2:1517577/1‑93 (MQ=255)

                                                                   aGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcg                   >  1:539837/1‑93 (MQ=255)

                                                                     gAAAGCACCAACCCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCgcggc                 <  1:1713867/93‑1 (MQ=255)

                                                                       aaGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGTACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGcggcgg               <  1:2515856/93‑1 (MQ=255)

                                                                        aGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCggcggc              <  1:4430746/93‑1 (MQ=255)

                                                                        aGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCggcggc              <  1:3575717/93‑1 (MQ=255)

                                                                           aCCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaaa           >  2:675953/1‑93 (MQ=255)

                                                                           aCCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaaa           >  1:390113/1‑93 (MQ=255)

                                                                            ccAACCCGGGTGCTTTGATTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCCCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc          <  2:557182/93‑1 (MQ=255)

                                                                            ccAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc          <  2:4329014/93‑1 (MQ=255)

                                                                            ccAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc          <  2:2815107/93‑1 (MQ=255)

                                                                            ccAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc          >  1:4475995/1‑93 (MQ=255)

                                                                            ccAAACCGCGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc          <  2:3459635/93‑1 (MQ=255)

                                                                             cAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACg         <  2:1776132/93‑1 (MQ=255)

                                                                              aacccGGGTGCTTTGGTTCCAGCGGCGTGCCAAAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACgg        <  1:439678/90‑1 (MQ=255)

                                                                              aaaCGGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCCCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACgg        <  2:59033/93‑1 (MQ=255)

                                                                              aaaCCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAACCCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACgg        <  2:4639598/93‑1 (MQ=255)

                                                                              aaaCCGGGTGCTTTGGTTCCAGCGGCGTCCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACgg        >  1:3693415/1‑93 (MQ=255)

                                                                               aaCCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGc       <  1:1966/93‑1 (MQ=255)

                                                                                aCCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCg      <  2:1870344/93‑1 (MQ=255)

                                                                                 ccGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGa     >  1:928043/1‑93 (MQ=255)

                                                                                 ccGGGAGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGTACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGAAAACGGCGa     >  2:602729/1‑93 (MQ=255)

                                                                                   gggTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCCGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGAcc   >  2:3740108/1‑93 (MQ=255)

                                                                                   gggTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGAcc   >  1:253397/1‑93 (MQ=255)

                                                                                    ggTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCa  <  1:4089041/93‑1 (MQ=255)

                                                                                    ggTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCa  <  1:1779570/93‑1 (MQ=255)

GCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCA  >  NC_000913/1990577‑1990753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`