BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,557,200	T→C	V137A (GTG→GCG)	b2442 →	putative prophage integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,557,200	0	T	C	100.0%	501.8 / NA	159	V137A (GTG→GCG)	b2442	putative prophage integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (80/79); total (80/79)

Only 100 of 173 total aligned reads displayed.

CCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTATC  >  NC_000913/2557110‑2557289

cccTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCgg                                                                                         >  2:3966061/1‑93 (MQ=255)

cccTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCgg                                                                                         <  2:4537970/93‑1 (MQ=255)

  cTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGgcggcg                                                                                       >  2:3120863/1‑93 (MQ=255)

   ttATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGcggcgg                                                                                      >  2:4450491/1‑93 (MQ=255)

    tactGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGa                                                                                     <  2:2005479/90‑1 (MQ=255)

    tATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGa                                                                                     <  2:2493927/93‑1 (MQ=255)

     aTTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGaa                                                                                    <  2:4628162/93‑1 (MQ=255)

     aTTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGaa                                                                                    <  2:64299/93‑1 (MQ=255)

     aTTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGaa                                                                                    <  2:4344544/93‑1 (MQ=255)

      ttGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAg                                                                                   >  2:3693624/1‑93 (MQ=255)

        gCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGAc                                                                                 <  1:103322/93‑1 (MQ=255)

        gCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGAc                                                                                 >  1:3877582/1‑93 (MQ=255)

        gCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGAc                                                                                 <  1:2567079/93‑1 (MQ=255)

           aaTGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTgg                                                                              >  2:4657293/1‑93 (MQ=255)

            aTGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGt                                                                             >  1:2478547/1‑93 (MQ=255)

            aTGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAACACAGCGGAAGACTGGt                                                                             >  1:4669845/1‑93 (MQ=255)

             tGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGtt                                                                            >  1:2619839/1‑93 (MQ=255)

              ggAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGttt                                                                           >  1:3421413/1‑93 (MQ=255)

                aaTTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGCCTGGTTTGc                                                                         >  2:3174612/1‑93 (MQ=255)

                      cccAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAg                                                                   <  1:1186778/93‑1 (MQ=255)

                         aGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGt                                                                <  2:1305676/93‑1 (MQ=255)

                          gTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGtt                                                               >  1:71551/1‑93 (MQ=255)

                          gTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGACTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGtt                                                               >  1:1829790/1‑93 (MQ=255)

                             gAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTggg                                                            >  1:477895/1‑92 (MQ=255)

                             gAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGa                                                            <  2:665326/93‑1 (MQ=255)

                             gAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGa                                                            <  1:612041/93‑1 (MQ=255)

                              aaCAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAg                                                           >  2:329667/1‑93 (MQ=255)

                              aaCAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAg                                                           <  1:2801771/93‑1 (MQ=255)

                               aCAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAgg                                                          <  1:1908184/93‑1 (MQ=255)

                               aCAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAgg                                                          >  1:2165081/1‑93 (MQ=255)

                                  aGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGggtg                                                       >  1:2402940/1‑93 (MQ=255)

                                     ccGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTc                                                    >  1:4236390/1‑93 (MQ=255)

                                     ccGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGGTGGAGGGGGGTc                                                    >  2:2510262/1‑93 (MQ=255)

                                      cGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCg                                                   >  2:2195331/1‑93 (MQ=255)

                                      cGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCg                                                   >  2:4460109/1‑93 (MQ=255)

                                       gCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCgg                                                  >  2:833711/1‑93 (MQ=255)

                                       gCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGGGGTCgg                                                  >  2:4362852/1‑93 (MQ=255)

                                        cAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGa                                                 >  1:3740648/1‑93 (MQ=255)

                                        cAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGGTGGAGGGTGGGCGGa                                                 >  2:1154486/1‑93 (MQ=255)

                                         aaGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGaa                                                <  2:3748457/93‑1 (MQ=255)

                                          aGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAAt                                               >  2:815552/1‑93 (MQ=255)

                                           ggAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATc                                              >  2:1329824/1‑93 (MQ=255)

                                            gAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGGCGGAATcc                                             >  1:3999596/1‑93 (MQ=255)

                                             aaaaaGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCt                                            >  1:1551765/1‑93 (MQ=255)

                                              aaaaGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTa                                           <  1:2645567/93‑1 (MQ=255)

                                              aaaaGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTa                                           >  1:3701935/1‑93 (MQ=255)

                                               aaaGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTAt                                          <  2:1859046/93‑1 (MQ=255)

                                               aaaGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTAt                                          <  2:2679536/93‑1 (MQ=255)

                                                aaGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATg                                         >  2:3062828/1‑93 (MQ=255)

                                                 aGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGc                                        >  2:3564277/1‑93 (MQ=255)

                                                 aGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGc                                        >  1:1424670/1‑93 (MQ=255)

                                                  gCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCa                                       <  2:4012493/93‑1 (MQ=255)

                                                  gCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCa                                       <  1:4577002/93‑1 (MQ=255)

                                                   ccATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaa                                      >  1:2028350/1‑93 (MQ=255)

                                                    cATTGATGCGCTCAACATGGCGGGAGGGTTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGTGGGGGGGTCGGTATCCTATgacaa                                     >  2:3914039/1‑89 (MQ=255)

                                                    cATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaa                                     <  2:3463523/93‑1 (MQ=255)

                                                    cATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaa                                     >  2:1184877/1‑93 (MQ=255)

                                                    cATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaa                                     >  1:2894291/1‑93 (MQ=255)

                                                    cATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaa                                     >  1:3899396/1‑93 (MQ=255)

                                                     aTTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaaa                                    >  1:3075304/1‑93 (MQ=255)

                                                     aTTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCaaaa                                    >  1:654401/1‑93 (MQ=255)

                                                      ttGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAAc                                   <  1:969653/93‑1 (MQ=255)

                                                      ttGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAAc                                   <  1:4103556/93‑1 (MQ=255)

                                                        gATGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAg                                 <  1:2390162/93‑1 (MQ=255)

                                                         aTGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAgg                                <  1:120269/93‑1 (MQ=255)

                                                         aTGCGCACAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAgg                                <  1:3270726/93‑1 (MQ=255)

                                                          tGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGt                               <  2:2471722/93‑1 (MQ=255)

                                                          tGCGCTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGt                               <  1:1189415/93‑1 (MQ=255)

                                                           gcgcTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTc                              <  2:2065185/93‑1 (MQ=255)

                                                           gcgcTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTc                              <  2:4354268/93‑1 (MQ=255)

                                                           gcgcTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTc                              <  1:3617037/93‑1 (MQ=255)

                                                            cgcTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCa                             >  1:4323416/1‑93 (MQ=255)

                                                            cgcTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCa                             <  2:942605/93‑1 (MQ=255)

                                                              cTCAACATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGa                           <  2:1739390/93‑1 (MQ=255)

                                                                  aCATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCgg                       <  1:1102649/93‑1 (MQ=255)

                                                                  aCATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCgg                       >  1:2901490/1‑93 (MQ=255)

                                                                  aCATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCgg                       >  1:3866801/1‑93 (MQ=255)

                                                                  aCATGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCgg                       >  1:3347393/1‑93 (MQ=255)

                                                                    aTGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGGGGTCGGAATCCTATGCAAAACAGGTCAAATCgcac                     >  2:4046300/1‑90 (MQ=255)

                                                                     tGGCGGCAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGGGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCAc                    >  2:1807937/1‑93 (MQ=255)

                                                                      ggcggcAGGATTTAAGAAGGCGGCGTAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACt                   <  1:4530152/93‑1 (MQ=255)

                                                                         ggcAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGa                <  1:8786/93‑1 (MQ=255)

                                                                           cAGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGaaa              >  2:2013314/1‑93 (MQ=255)

                                                                            aGGATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGaaaa             <  1:2129660/93‑1 (MQ=255)

                                                                             ggATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGaaaaa            >  1:2509915/1‑93 (MQ=255)

                                                                             ggATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGaaaaa            <  2:1629887/93‑1 (MQ=255)

                                                                             ggATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGaaaaa            <  1:4492465/93‑1 (MQ=255)

                                                                              gATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAg           <  2:2888664/93‑1 (MQ=255)

                                                                              gATTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAg           <  1:1156203/93‑1 (MQ=255)

                                                                               aTTTAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGa          >  1:1534647/1‑93 (MQ=255)

                                                                                tttAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGAc         >  2:871011/1‑93 (MQ=255)

                                                                                 ttAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACg        >  2:4530616/1‑93 (MQ=255)

                                                                                 ttAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGCGTTCGGAATCCTATTCAAAACAGGTGGGCTCGGCACTAGATAAAGACg        >  2:2325809/1‑93 (MQ=255)

                                                                                  tAAGAAGGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGt       <  2:3025229/93‑1 (MQ=255)

                                                                                  tAAGAAGGCGCCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGATCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGt       <  2:965900/93‑1 (MQ=255)

                                                                                    agaagGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCt     >  1:3725003/1‑93 (MQ=255)

                                                                                    agaagGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCt     <  1:3596288/93‑1 (MQ=255)

                                                                                     gaagGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTa    <  2:2156558/93‑1 (MQ=255)

                                                                                      aagGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTAt   <  2:623956/93‑1 (MQ=255)

                                                                                       agGCGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTTGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTATc  <  1:483323/93‑1 (MQ=255)

CCCTTATTGCCAATGGAATTAACCCAGTGGAACAAGCCCGCAAGGAAAAAGCCATTGATGCGCTCAACATGGCGGCAGGATTTAAGAAGGTGGCGGAAGACTGGTTTGCTACCAGGGTTGGAGGGTGGTCGGAATCCTATGCAAAACAGGTCAGATCGGCACTAGAAAAAGACGTCTATC  >  NC_000913/2557110‑2557289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`