BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,753,655	T→C	intergenic (+256/‑525)	smpB → / → intA	small protein B/prophage CP4‑57 integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,753,655	0	T	C	100.0%	502.8 / NA	161	intergenic (+256/‑525)	smpB/intA	small protein B/prophage CP4‑57 integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (65/96); total (65/96)

Only 100 of 167 total aligned reads displayed.

GAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCT  >  NC_000913/2753565‑2753744

gAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGgcgc                                                                                         >  1:3935988/1‑93 (MQ=255)

 aGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCa                                                                                        <  1:2395492/93‑1 (MQ=255)

  ggCTGGTCATGGCGCTCATAAATCTGGTATACTTGCCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCAt                                                                                       <  1:406389/93‑1 (MQ=255)

     tGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGcc                                                                                    >  2:805299/1‑93 (MQ=255)

       gTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGa                                                                                  <  2:482683/93‑1 (MQ=255)

        tCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGACACCCAAGGCGCATGCCGAg                                                                                 >  1:4224965/1‑93 (MQ=255)

        tCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAg                                                                                 <  2:3348643/93‑1 (MQ=255)

        tCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAg                                                                                 >  1:2151616/1‑93 (MQ=255)

         cATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgg                                                                                <  1:302205/93‑1 (MQ=255)

           tGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgggg                                                                              <  1:4360107/93‑1 (MQ=255)

           tGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAgggg                                                                              >  2:154776/1‑93 (MQ=255)

            ggCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGc                                                                             <  2:4280870/93‑1 (MQ=255)

            ggCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGc                                                                             <  1:3849283/93‑1 (MQ=255)

             gcgcTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCg                                                                            <  1:1469355/93‑1 (MQ=255)

              cgcTCATAAATCTGGCATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGACGGGCgg                                                                           >  1:906002/1‑93 (MQ=255)

               gcTCATAAATCTGGTATACTTACCTTTACCCATTGGGGCTGATTCTGGATCCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGt                                                                          <  1:781913/93‑1 (MQ=255)

                cTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGtt                                                                         >  1:1065740/1‑93 (MQ=255)

                cTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGtt                                                                         <  1:1233360/93‑1 (MQ=255)

                cTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGtt                                                                         <  1:2087023/93‑1 (MQ=255)

                cTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGtt                                                                         <  1:1203313/93‑1 (MQ=255)

                 tcatcaATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg                                                                        >  2:2176984/1‑93 (MQ=255)

                 tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg                                                                        >  2:3979229/1‑93 (MQ=255)

                 tCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTg                                                                        >  1:2015532/1‑93 (MQ=255)

                  cATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTgg                                                                       >  2:1430427/1‑93 (MQ=255)

                    tAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGcc                                                                     <  1:762334/93‑1 (MQ=255)

                    tAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGcc                                                                     >  2:1243303/1‑93 (MQ=255)

                      aaTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCtg                                                                   >  1:1461090/1‑92 (MQ=255)

                      aaTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTc                                                                   >  1:740048/1‑93 (MQ=255)

                       aTCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCg                                                                  >  2:3831579/1‑93 (MQ=255)

                         cTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTTGCCTCGTa                                                                <  2:3052705/93‑1 (MQ=255)

                         cTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTa                                                                <  1:449438/93‑1 (MQ=255)

                          tGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGAGGTTGGCCTCGTaa                                                               <  1:2326394/93‑1 (MQ=255)

                           ggTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaa                                                              <  2:2921122/93‑1 (MQ=255)

                            gTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaa                                                             >  2:2439712/1‑93 (MQ=255)

                            gTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaa                                                             >  2:3255141/1‑93 (MQ=255)

                            gTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaa                                                             <  2:135937/93‑1 (MQ=255)

                             tataCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaaa                                                            <  1:1002892/93‑1 (MQ=255)

                             tataCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaaa                                                            >  1:304049/1‑93 (MQ=255)

                             tataCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTaaaaa                                                            <  2:1963546/93‑1 (MQ=255)

                               taCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGc                                                          <  2:1358819/93‑1 (MQ=255)

                                aCTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGcc                                                         >  2:2623841/1‑93 (MQ=255)

                                  ttACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGc                                                       >  2:624541/1‑93 (MQ=255)

                                    aCCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaa                                                     >  1:4268596/1‑93 (MQ=255)

                                    aCCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaa                                                     <  1:1505664/93‑1 (MQ=255)

                                     ccTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaa                                                    >  2:1976204/1‑93 (MQ=255)

                                     ccTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaa                                                    >  2:2360410/1‑93 (MQ=255)

                                        ttACACATTGGGTCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaaaa                                                 <  2:3341433/93‑1 (MQ=255)

                                        ttACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCaaaaaa                                                 <  2:3711332/93‑1 (MQ=255)

                                          tcacaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATa                                               <  1:3404737/92‑1 (MQ=255)

                                           cacaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAg                                              <  1:4305913/93‑1 (MQ=255)

                                           cacaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAg                                              >  2:3381538/1‑93 (MQ=255)

                                            acaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGt                                             <  2:3174675/93‑1 (MQ=255)

                                            acaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGt                                             <  1:3544323/93‑1 (MQ=255)

                                            acaTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGt                                             >  1:2819152/1‑93 (MQ=255)

                                             caTTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTc                                            >  2:2111217/1‑93 (MQ=255)

                                               ttGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGc                                          >  2:2434430/1‑93 (MQ=255)

                                               ttGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGc                                          <  1:2638537/93‑1 (MQ=255)

                                                   ggCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAac                                      <  1:2791013/93‑1 (MQ=255)

                                                   ggCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAac                                      <  2:3807916/93‑1 (MQ=255)

                                                     cTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacga                                    <  1:3509690/93‑1 (MQ=255)

                                                      tGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacgac                                   >  1:2315456/1‑93 (MQ=255)

                                                      tGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacgac                                   <  2:1263531/93‑1 (MQ=255)

                                                      tGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacgac                                   <  2:187989/93‑1 (MQ=255)

                                                      tGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAacgac                                   >  1:3965271/1‑93 (MQ=255)

                                                        aTTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAAcgacga                                 >  2:1027003/1‑93 (MQ=255)

                                                        aTTCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAAcgacga                                 >  2:1244439/1‑93 (MQ=255)

                                                         ttCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGaa                                >  1:98620/1‑93 (MQ=255)

                                                          tCTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGaaa                               <  2:3072997/93‑1 (MQ=255)

                                                           cTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGaaaa                              >  1:3653454/1‑93 (MQ=255)

                                                           cTGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGaaaa                              <  1:3363549/93‑1 (MQ=255)

                                                           cTGGAGTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTGGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGaaaa                              <  1:1372929/93‑1 (MQ=255)

                                                            tGGATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAAc                             >  1:2499733/1‑93 (MQ=255)

                                                             ggATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACt                            >  2:3336112/1‑93 (MQ=255)

                                                              gATTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTa                           <  1:1292745/93‑1 (MQ=255)

                                                               aTTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAAGTAc                          >  2:1671310/1‑93 (MQ=255)

                                                               aTTCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTAc                          >  2:4409889/1‑93 (MQ=255)

                                                                ttCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACg                         >  2:4160981/1‑93 (MQ=255)

                                                                 tCGACGGGATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGc                        <  2:4200957/93‑1 (MQ=255)

                                                                 tCGACGGGATTTGCGAAACCAAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGc                        <  2:2812383/93‑1 (MQ=255)

                                                                      gggATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTag                   <  2:319588/93‑1 (MQ=255)

                                                                      gggATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTag                   <  2:2334597/93‑1 (MQ=255)

                                                                        gATTTGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTagca                 >  2:1740662/1‑93 (MQ=255)

                                                                          tttGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTagcagc               >  1:1558469/1‑93 (MQ=255)

                                                                          tttGCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTagcagc               <  1:3653932/93‑1 (MQ=255)

                                                                             gCGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTta            >  1:1548521/1‑93 (MQ=255)

                                                                              cGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaa           <  2:1985063/93‑1 (MQ=255)

                                                                              cGAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaa           <  1:3906388/93‑1 (MQ=255)

                                                                               gAAACCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaat          <  2:1690288/93‑1 (MQ=255)

                                                                                aaaCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaata         >  1:4111095/1‑93 (MQ=255)

                                                                                 aaCCCAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTtaataa        <  2:621936/93‑1 (MQ=255)

                                                                                   cccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAAcc      <  2:276774/93‑1 (MQ=255)

                                                                                    ccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCt     <  1:2537356/93‑1 (MQ=255)

                                                                                    ccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCt     <  2:2997624/93‑1 (MQ=255)

                                                                                    ccAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCt     >  2:441151/1‑93 (MQ=255)

                                                                                     cAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTg    >  1:1841219/1‑93 (MQ=255)

                                                                                     cAAGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTg    <  1:4464954/93‑1 (MQ=255)

                                                                                      aaGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGc   <  1:3571312/93‑1 (MQ=255)

                                                                                      aaGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGc   <  2:3403196/93‑1 (MQ=255)

                                                                                      aaGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGc   >  2:862361/1‑93 (MQ=255)

                                                                                       aGGCGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCt  <  1:681301/93‑1 (MQ=255)

GAGGCTGGTCATGGCGCTCATAAATCTGGTATACTTACCTTTACACATTGGGGCTGATTCTGGATTCGACGGGATTTGCGAAACCCAAGGTGCATGCCGAGGGGCGGTTGGCCTCGTAAAAAGCCGCAAAAAATAGTCGCAAACGACGAAAACTACGCTTTAGCAGCTTAATAACCTGCT  >  NC_000913/2753565‑2753744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`