Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,778,911 T→C T656A (ACT→GCT)  ypjA ← putative ATP‑binding component of a transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,778,9110TC99.5% 575.5 / NA 182T656A (ACT→GCT) ypjAputative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (85/96);  minor base A (1/0);  total (86/96)
Fisher's exact test for biased strand distribution p-value = 4.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 187 total aligned reads displayed.

CATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGC  >  NC_000913/2778821‑2779000
                                                                                          |                                                                                         
cATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAgcgc                                                                                         >  1:46279/1‑93 (MQ=255)
  tataCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCa                                                                                       >  2:4523085/1‑93 (MQ=255)
  tataCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCa                                                                                       >  1:2437105/1‑93 (MQ=255)
   ataCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCaa                                                                                      <  1:1863293/93‑1 (MQ=255)
    taCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAAc                                                                                     >  1:5788/1‑93 (MQ=255)
    taCCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAAc                                                                                     <  1:3908246/93‑1 (MQ=255)
      ccGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACAt                                                                                   <  2:313335/93‑1 (MQ=255)
      ccGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACAt                                                                                   <  1:2299227/93‑1 (MQ=255)
      ccGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACAt                                                                                   <  1:2212364/93‑1 (MQ=255)
      ccGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACAt                                                                                   >  2:618794/1‑93 (MQ=255)
       cGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATc                                                                                  <  2:1175493/93‑1 (MQ=255)
        gTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGGCAACATCt                                                                                 >  1:633484/1‑93 (MQ=255)
        gTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCt                                                                                 >  2:2793656/1‑93 (MQ=255)
              ttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCa                                                                           <  2:4080841/93‑1 (MQ=255)
              ttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCa                                                                           >  1:4209246/1‑93 (MQ=255)
              ttgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCa                                                                           <  2:3734050/93‑1 (MQ=255)
               tgcCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCAt                                                                          >  2:3334885/1‑93 (MQ=255)
                 ccACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATaa                                                                        >  2:3968048/1‑93 (MQ=255)
                   aCCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAAc                                                                      >  1:3499420/1‑93 (MQ=255)
                     cTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACAt                                                                    >  2:2701907/1‑93 (MQ=255)
                     cTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACAt                                                                    <  1:1327972/93‑1 (MQ=255)
                     cTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACAt                                                                    <  1:1495746/93‑1 (MQ=255)
                     cTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACAt                                                                    <  2:4454593/93‑1 (MQ=255)
                     cTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACAt                                                                    <  2:3454423/93‑1 (MQ=255)
                      tttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATc                                                                   <  2:1525718/93‑1 (MQ=255)
                      tttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATc                                                                   >  1:1382350/1‑93 (MQ=255)
                      tttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATc                                                                   >  2:4403441/1‑93 (MQ=255)
                      tttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATc                                                                   >  1:451825/1‑93 (MQ=255)
                      tttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATc                                                                   >  1:228487/1‑93 (MQ=255)
                       ttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATcc                                                                  <  1:4271670/93‑1 (MQ=255)
                       ttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATcc                                                                  <  1:2415888/93‑1 (MQ=255)
                       ttGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATcc                                                                  >  1:3673852/1‑93 (MQ=255)
                        tGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCa                                                                 >  1:2093700/1‑93 (MQ=255)
                           tatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAttt                                                              <  2:2123701/93‑1 (MQ=255)
                           tatTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAttt                                                              >  2:1992863/1‑93 (MQ=255)
                            atTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtttt                                                             <  1:4157486/93‑1 (MQ=255)
                            atTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtttt                                                             >  2:3712978/1‑93 (MQ=255)
                            atTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtttt                                                             >  2:361693/1‑93 (MQ=255)
                            atTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCAtttt                                                             >  2:1713302/1‑93 (MQ=255)
                             tttGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTg                                                            >  1:4085029/1‑93 (MQ=255)
                              ttGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGc                                                           >  2:466230/1‑93 (MQ=255)
                               tGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGcc                                                          >  1:3121205/1‑93 (MQ=255)
                                  tttATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGtt                                                       >  1:3576584/1‑93 (MQ=255)
                                   ttATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTg                                                      <  1:1124551/93‑1 (MQ=255)
                                   ttATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTg                                                      >  2:1364983/1‑93 (MQ=255)
                                    tATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTgg                                                     <  1:3548674/93‑1 (MQ=255)
                                      tCAGAAGTGGCACTGGCATATATTGTTTGGGTTCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCa                                                   <  1:1553607/93‑1 (MQ=255)
                                       cAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCAt                                                  <  2:4411463/93‑1 (MQ=255)
                                       cAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCAt                                                  <  1:1785907/93‑1 (MQ=255)
                                        aGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCAtt                                                 <  1:3240356/93‑1 (MQ=255)
                                         gAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATta                                                >  2:2962358/1‑93 (MQ=255)
                                         gAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATta                                                <  1:1392913/93‑1 (MQ=255)
                                          aaGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaa                                               <  1:2568968/93‑1 (MQ=255)
                                           aGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaat                                              >  1:2075834/1‑93 (MQ=255)
                                            gTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaata                                             <  2:3490850/93‑1 (MQ=255)
                                            gTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaata                                             <  2:3894410/93‑1 (MQ=255)
                                            gTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaata                                             <  1:2798968/93‑1 (MQ=255)
                                            gTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATtaata                                             <  2:1525917/93‑1 (MQ=255)
                                              ggCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTaataat                                           <  1:1831250/93‑1 (MQ=255)
                                               gCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATc                                          <  1:1149481/93‑1 (MQ=255)
                                               gCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATc                                          <  1:979067/93‑1 (MQ=255)
                                                 aCTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCgt                                        <  2:1786050/93‑1 (MQ=255)
                                                 aCTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCgt                                        <  2:485080/93‑1 (MQ=255)
                                                 aCTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCgt                                        <  1:3535260/93‑1 (MQ=255)
                                                  cTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCgtg                                       <  2:824421/93‑1 (MQ=255)
                                                    ggCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTc                                     <  1:4483996/93‑1 (MQ=255)
                                                      cATATATTGTCTGGGTGCCAGCTCTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCaa                                   <  1:4174820/93‑1 (MQ=255)
                                                        tatatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACt                                 <  2:3853511/93‑1 (MQ=255)
                                                         atatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTg                                <  2:3513540/93‑1 (MQ=255)
                                                          tatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgc                               <  2:3222212/93‑1 (MQ=255)
                                                          tatTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgc                               >  1:61533/1‑93 (MQ=255)
                                                          tatTGTTTGGGTGCCAGCACTATTGAGTACAGAGCCAACATCTTTTACATAAACATCCATTTTGCCGTTGGCATTCATAATCGTGTCAACTgc                               >  1:1879718/1‑93 (MQ=255)
                                                           atTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgcg                              >  2:1539033/1‑93 (MQ=255)
                                                           atTGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgcg                              >  1:295251/1‑93 (MQ=255)
                                                            ttGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgcgc                             >  2:4355536/1‑93 (MQ=255)
                                                            ttGTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgcgc                             >  1:2723502/1‑93 (MQ=255)
                                                            tggTTTGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTgcgc                             <  2:3832660/91‑1 (MQ=255)
                                                               tttGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCggg                          <  2:2914064/93‑1 (MQ=255)
                                                                ttGGGTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGa                         <  2:302425/93‑1 (MQ=255)
                                                                  gggTGCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAAc                       >  2:2144113/1‑93 (MQ=255)
                                                                      gCCAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGt                   <  2:913412/93‑1 (MQ=255)
                                                                        cAGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTga                 <  2:3578555/93‑1 (MQ=255)
                                                                         aGCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTgac                <  2:2937140/93‑1 (MQ=255)
                                                                          gCACTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTgacg               >  2:570376/1‑93 (MQ=255)
                                                                            aCTATTGAGTACATCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTgacgac             <  2:2052421/93‑1 (MQ=255)
                                                                            aCTATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTgacgac             <  1:2630342/93‑1 (MQ=255)
                                                                              tATTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTg           <  2:3461312/93‑1 (MQ=255)
                                                                               aTTGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGt          >  2:933423/1‑93 (MQ=255)
                                                                                ttGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGtt         >  1:819750/1‑93 (MQ=255)
                                                                                ttGAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGtt         >  2:2843814/1‑93 (MQ=255)
                                                                                  gAGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTaa       <  1:2369466/93‑1 (MQ=255)
                                                                                   aGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAAt      <  1:3426483/93‑1 (MQ=255)
                                                                                   aGTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAAt      >  2:267429/1‑93 (MQ=255)
                                                                                    gTACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATg     >  1:3251715/1‑93 (MQ=255)
                                                                                     tACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGACCCAGTGACGACTGTTAATGa    <  1:487239/93‑1 (MQ=255)
                                                                                     tACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGa    <  1:3972038/93‑1 (MQ=255)
                                                                                     tACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGa    <  2:2258911/93‑1 (MQ=255)
                                                                                     tACAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGa    <  2:161860/93‑1 (MQ=255)
                                                                                       cAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGc  <  1:4357134/93‑1 (MQ=255)
                                                                                       cAGCGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGc  >  1:697527/1‑93 (MQ=255)
                                                                                          |                                                                                         
CATATACCGTTTGCTTGCCACCTTTGATATTTGCTTTATCAGAAGTGGCACTGGCATATATTGTTTGGGTGCCAGCACTATTGAGTACAGTGCCAACATCTTTTCCATAAACATCCATTTTGCCGTTGGCATTAATAATCGTGTCAACTGCGCGGGAACCAGTGACGACTGTTAATGAGC  >  NC_000913/2778821‑2779000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: