BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,951,166	+C	coding (35/1818 nt)	ilvD →	dihydroxyacid dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,951,166	1	.	C	100.0%	290.8 / NA	91	G12A (GGG→GCG)	ilvD	dihydroxyacid dehydratase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (6/85); total (6/85)

Only 100 of 116 total aligned reads displayed.

GAGACAGACACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GG‑‑‑GC‑C‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAC  >  NC_000913/3951074‑3951248

gagaCAGACACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑gg                                                                                           <  1:1616233/93‑1 (MQ=255)

 agacagacACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑ggc                                                                                          <  2:257880/93‑2 (MQ=255)

 agacagacACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCGC‑‑GTGCG‑CCG‑g‑gg‑‑‑g                                                                                       >  1:1200442/1‑93 (MQ=255)

  gacagacaCTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCGC‑‑GGGCG‑CTG‑T‑gg‑‑‑gg                                                                                      >  1:493327/1‑92 (MQ=255)

   acagacaCTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTC‑‑GGGGG‑CTG‑T‑gg‑‑‑ggc                                                                                     >  1:2286470/1‑91 (MQ=255)

     agacaCTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTC‑‑CTGGG‑CGG‑T‑gg‑‑‑ggcgg                                                                                   >  2:1722838/1‑89 (MQ=255)

              gAGTAAATAAAGTATGCCTTAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAAt                                                                         <  1:3958536/93‑1 (MQ=255)

              gAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAAt                                                                         <  1:2914970/93‑1 (MQ=255)

                 taaataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑Ac                                                                     <  2:4365174/93‑1 (MQ=255)

                   aataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCg                                                                   <  2:2438566/93‑1 (MQ=255)

                   aataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGGATG‑AACg                                                                   >  2:644878/1‑93 (MQ=255)

                    ataaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGa                                                                  <  1:4540475/93‑1 (MQ=255)

                     taaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGG‑‑CACCCGGATG‑ACCGAc                                                                 >  2:431994/1‑93 (MQ=255)

                     taaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGAc                                                                 <  2:1750617/93‑1 (MQ=255)

                     aaaaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGAc                                                                 <  2:3896076/92‑1 (MQ=255)

                       aaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGc                                                               <  1:383791/93‑1 (MQ=255)

                       aaGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTC‑‑GTGCG‑CTG‑TGGG‑‑‑GCGC‑‑CACCCGGATG‑ACCGACGc                                                               >  2:773959/1‑93 (MQ=255)

                         gTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCg                                                             <  2:3649671/93‑1 (MQ=255)

                            tGCCTGAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGAtt                                                          <  2:4356974/93‑1 (MQ=255)

                            tGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGAtt                                                          <  1:3371048/93‑1 (MQ=255)

                            tGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGAtt                                                          <  1:1301257/93‑1 (MQ=255)

                             gCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGAttt                                                         <  1:3493363/93‑1 (MQ=255)

                              ccTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTc                                                        <  1:4273234/93‑1 (MQ=255)

                              ccTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTc                                                        <  2:174317/93‑1 (MQ=255)

                               cTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCg                                                       <  2:673744/93‑1 (MQ=255)

                               cTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CCCCCGAAAG‑AACGACGCCGATCTCg                                                       >  2:2957748/1‑93 (MQ=255)

                                tAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCgg                                                      <  1:2166710/93‑1 (MQ=255)

                                tAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCgg                                                      <  2:36346/93‑1 (MQ=255)

                                 aaGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTC‑‑GTGCG‑CTG‑T‑GG‑‑‑GG‑CGGCCCCGGAATG‑AACGACGCCGATTTTggg                                                     >  1:3796258/1‑92 (MQ=255)

                                 aaGCACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGt                                                     <  2:690816/93‑1 (MQ=255)

                                  aGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTa                                                    <  1:1707137/93‑1 (MQ=255)

                                   gTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTC‑‑GTGGGCCGG‑G‑GG‑‑‑GCGC‑‑CACCGGGATT‑ACCCACCCCGCATTTGGTaa                                                   >  1:2731897/1‑93 (MQ=255)

                                   gTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTC‑‑GTGCG‑CTG‑TGGG‑‑‑GCGC‑‑CACCCGAATG‑AACGACGCCGATTTTGGTaa                                                   >  2:2702989/1‑93 (MQ=255)

                                   gTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGATGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGtga                                                   <  1:4211938/93‑3 (MQ=255)

                                    tACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAg                                                  <  1:456917/93‑1 (MQ=255)

                                     aCCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGc                                                 <  2:3714448/93‑1 (MQ=255)

                                      ccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCGC‑‑GTGCG‑CTG‑C‑GGC‑‑GCGC‑‑CCCCGGCATGAACCCAC‑CCCACTTCGGTAAGcc                                                >  1:3469010/1‑93 (MQ=255)

                                      ccGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCCC‑‑GTGCG‑CCGCT‑GC‑‑‑GCGC‑‑CCCCGGGATG‑AACGACGCCCCTTTCTGGAAGcc                                                >  2:3930541/1‑93 (MQ=255)

                                       cGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCg                                               <  2:2154903/93‑1 (MQ=255)

                                       cGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCg                                               <  1:939762/93‑1 (MQ=255)

                                        gTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGGAGG‑ACCGAAGCCGAATTCGGTAAAccca                                              >  2:1346172/1‑91 (MQ=255)

                                          tCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGAtt                                            <  2:1651175/93‑1 (MQ=255)

                                          tCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGGTC‑‑CTGCG‑GGG‑G‑GGC‑‑GCGG‑‑CACCCGAAAG‑CCCGCCGCCCATTTCTGTAAGCCGCtt                                            >  1:332267/1‑93 (MQ=255)

                                          tCCGCCACCACCACTCATGGTCGTAATATGGCGGGGGCTCCGGGGCG‑TTG‑G‑GG‑‑‑CG‑C‑‑CACCCGAATG‑ACCCACGCCGCTTTTGGGAAGGCggct                                            >  1:1070240/1‑90 (MQ=255)

                                           ccGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTa                                           <  2:3077173/93‑1 (MQ=255)

                                           ccGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTa                                           <  1:3950195/93‑1 (MQ=255)

                                            cGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTAt                                          <  2:1057164/93‑1 (MQ=255)

                                            cGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTAt                                          <  1:4013553/93‑1 (MQ=255)

                                             gCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATc                                         <  1:3132281/93‑1 (MQ=255)

                                             gCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATc                                         <  2:2558720/93‑1 (MQ=255)

                                              ccaccaccaCTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATcg                                        <  2:517990/93‑1 (MQ=255)

                                              ccaccaccaCTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CCG‑T‑GGC‑‑GCGC‑‑CACCCGAATG‑ACCGACCCCGAGTTCGGTAAGCCCGTTATcg                                        >  2:336127/1‑93 (MQ=255)

                                               caccaccacTCATGGGCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATcgc                                       <  1:1234030/93‑1 (MQ=255)

                                                cccaccacTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATcgcg                                      <  2:4278977/92‑1 (MQ=255)

                                                accaccacTCATGGTCGTAATATGGCGGGGGCTC‑‑GTGCG‑CTG‑T‑GGCGCGC‑C‑‑CCCCGGAA‑G‑AACGACGCCCATTTCGGTGAGACGACTATtgcg                                      >  2:447684/1‑93 (MQ=255)

                                                  caccacTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGt                                    <  1:1642063/93‑1 (MQ=255)

                                                  caccacTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGt                                    <  2:1255042/93‑1 (MQ=255)

                                                    ccacTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTtg                                  <  1:1445898/93‑1 (MQ=255)

                                                      ccTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTtgtg                                <  2:3229987/92‑1 (MQ=255)

                                                      acTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTtgtg                                <  2:4746821/93‑1 (MQ=255)

                                                        tCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGaa                              <  2:3961890/93‑1 (MQ=255)

                                                        tCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGaa                              <  1:2214470/93‑1 (MQ=255)

                                                        tCATGGTCGTAATATGGCGGGGGCTC‑‑GTGCG‑CTG‑TGGG‑‑‑GCGC‑‑CCCCCGGATG‑ACCGCCCCCCATTTTTGTTAGGCCATTTTCGCGGTtgtgta                              >  2:3027847/1‑91 (MQ=255)

                                                         cATGGTCGTAATATGGGGGGGGCTC‑‑GTGCG‑CTG‑TGGG‑‑‑GCGC‑‑CACCCGGATG‑ACCGACGCCGAATTCGGGAAGCCGATTATCGCGGGTGTGGAc                             >  2:4506665/1‑93 (MQ=255)

                                                         cATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAAc                             <  2:4731679/93‑1 (MQ=255)

                                                          aTGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACt                            <  2:2655115/93‑1 (MQ=255)

                                                           tGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTc                           <  2:1769825/93‑1 (MQ=255)

                                                             gTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGt                         <  1:2585324/93‑1 (MQ=255)

                                                             gTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGt                         <  2:1554359/93‑1 (MQ=255)

                                                              tCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGtt                        <  2:517264/93‑1 (MQ=255)

                                                               cGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTc                       <  1:1539218/93‑1 (MQ=255)

                                                               cGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTc                       <  2:1647658/93‑1 (MQ=255)

                                                                   atatGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCAccc                   <  2:2070869/93‑1 (MQ=255)

                                                                    tatGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCa                  <  2:3134200/93‑1 (MQ=255)

                                                                     atGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCaa                 <  1:1030812/93‑1 (MQ=255)

                                                                     atGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCaa                 <  1:2611960/93‑1 (MQ=255)

                                                                      tGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAt                <  1:3296565/93‑1 (MQ=255)

                                                                       ggCGGTTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAtt               <  1:1274847/93‑1 (MQ=255)

                                                                       ggCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAtt               <  1:1274848/93‑1 (MQ=255)

                                                                        gCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAttt              <  2:115874/93‑1 (MQ=255)

                                                                        gCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAttt              <  2:680811/93‑1 (MQ=255)

                                                                        gCGGGTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAAttt              <  2:1986488/93‑1 (MQ=255)

                                                                           ggTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTa           <  1:2504533/93‑1 (MQ=255)

                                                                            gTGCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTATAc          <  1:3574851/93‑1 (MQ=255)

                                                                              gCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCg        <  2:3627478/93‑1 (MQ=255)

                                                                              gCTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCg        >  1:224926/1‑93 (MQ=255)

                                                                               cTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCgg       >  2:3708362/1‑93 (MQ=255)

                                                                               cTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCgg       <  1:2247489/93‑1 (MQ=255)

                                                                               cTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCgg       <  2:1396762/93‑1 (MQ=255)

                                                                               cTC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCgg       <  2:3020198/93‑1 (MQ=255)

                                                                                tC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCggg      >  1:1463993/1‑93 (MQ=255)

                                                                                tC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCggg      <  1:3843585/93‑1 (MQ=255)

                                                                                tC‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCggg      <  2:2866677/93‑1 (MQ=255)

                                                                                 c‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGt     <  2:2813322/93‑1 (MQ=255)

                                                                                 c‑‑GTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGt     <  1:2525995/93‑1 (MQ=255)

                                                                                    gTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTc    >  1:4733053/1‑93 (MQ=255)

                                                                                    gTGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTc    <  1:1261020/93‑1 (MQ=255)

                                                                                     tGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTATCGGGTCa   >  2:2156924/1‑93 (MQ=255)

                                                                                     tGCG‑CTG‑T‑GGC‑‑GCGC‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCa   <  2:743695/93‑1 (MQ=255)

                                                                                      gcg‑cTG‑T‑GGC‑‑GCAC‑‑CACCGAAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCaa  <  2:4221021/93‑2 (MQ=255)

GAGACAGACACTGGGAGTAAATAAAGTATGCCTAAGTACCGTTCCGCCACCACCACTCATGGTCGTAATATGGCGGGTGCTC‑‑GTGCG‑CTG‑T‑GG‑‑‑GC‑C‑‑CACCGGAATG‑ACCGACGCCGATTTCGGTAAGCCGATTATCGCGGTTGTGAACTCGTTCACCCAATTTGTACCGGGTCAC  >  NC_000913/3951074‑3951248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`