BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,551	+T	intergenic (‑120/‑741)	ppiC ← / → rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,550	1	.	T	100.0%	430.1 / NA	123	intergenic (‑119/‑742)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (55/68); total (55/68)

Only 100 of 127 total aligned reads displayed.

AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑C‑TCGCA‑GGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG  >  NC_000913/3957471‑3957626

aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGT‑c‑cc                                                                   <  2:596648/93‑2 (MQ=255)

aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGT‑c‑cc                                                                   <  1:3528767/93‑2 (MQ=255)

   aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGC‑G‑CTTCGCA‑GGT‑c‑cctca                                                                >  2:2461867/1‑89 (MQ=255)

     gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAg                                                               >  2:1798487/1‑93 (MQ=255)

       tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAggg                                                             <  2:3044564/93‑1 (MQ=255)

       tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAggg                                                             >  1:719859/1‑93 (MQ=255)

       tCCGAAGATGCTAACGTATTTGTCAGTCAGGGAGTGGCTGGAACATATATGGAAAAACCCGGGAAATTCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAggg                                                             <  2:4234829/93‑1 (MQ=255)

        ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑CTTCGCA‑GGTCC‑CTCAAgggg                                                            <  1:4260472/93‑1 (MQ=255)

         cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGga                                                           <  1:3895607/93‑1 (MQ=255)

         cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGga                                                           <  2:3104340/93‑1 (MQ=255)

            aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGaa                                                        <  1:1396783/93‑1 (MQ=255)

             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATTGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGaaa                                                       >  2:2592414/1‑93 (MQ=255)

             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCC‑GGTCC‑CTCAAGGGGAGaaa                                                       >  1:4350201/1‑93 (MQ=255)

             gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGaaa                                                       >  1:2899088/1‑93 (MQ=255)

               tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAAc                                                     >  2:2159224/1‑93 (MQ=255)

                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTa                                                  <  2:4326811/93‑1 (MQ=255)

                  tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTa                                                  >  2:2468805/1‑93 (MQ=255)

                  tAACGTAATTGTCAGACAGGAAATGGCTAGTACATATATGGCAAAAGCCAGGAAAATCCGA‑G‑CTTCGCA‑GGT‑CACTCAAGGGAAGAAAACTTa                                                  <  1:4196628/93‑1 (MQ=255)

                   agcGTAATGGTAAGTCAGGGAGTGGCTGGTACATATAGGGCAAAAGCCGGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAg                                                 <  2:1742699/91‑1 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAg                                                 >  2:3003532/1‑93 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAg                                                 <  2:4744306/93‑1 (MQ=255)

                   aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAACCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAg                                                 >  2:4585667/1‑93 (MQ=255)

                    aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAgg                                                <  2:1288017/93‑1 (MQ=255)

                     cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAggg                                               <  2:3673431/93‑1 (MQ=255)

                      gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGc                                              >  2:4378360/1‑93 (MQ=255)

                         aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc                                           >  1:4702288/1‑93 (MQ=255)

                          ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctct                                          <  2:291347/93‑1 (MQ=255)

                          ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCctct                                          <  2:3620030/93‑1 (MQ=255)

                           tGTCAGTCAGGGAGTGGCTGGTACATGTATGGCAAAAGCCGGGAAAATCCGG‑G‑CTTCGCAGGGC‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTa                                         <  2:282603/93‑1 (MQ=255)

                            gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAt                                        <  2:440679/93‑1 (MQ=255)

                            gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAt                                        <  1:4420672/93‑1 (MQ=255)

                            gtcagtcaGGGAGTGCCGGGTACATATAGGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAt                                        <  1:3541469/93‑1 (MQ=255)

                             tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATg                                       <  2:1909374/93‑1 (MQ=255)

                              cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAtcg                                      >  2:232461/1‑91 (MQ=255)

                              cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                      <  1:1625363/93‑1 (MQ=255)

                                gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCGAGGGGAGAAAACTTAGGGCCTCTATGGGc                                    >  2:4689933/1‑93 (MQ=255)

                                 tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                   >  2:754053/1‑93 (MQ=255)

                                 tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                   <  2:114639/93‑1 (MQ=255)

                                   agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                 >  2:4616872/1‑93 (MQ=255)

                                    gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                >  2:2705324/1‑93 (MQ=255)

                                    gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                <  1:992955/93‑1 (MQ=255)

                                     ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                               <  2:3403299/93‑1 (MQ=255)

                                      gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                              >  1:4074900/1‑93 (MQ=255)

                                      gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                              >  2:2403508/1‑93 (MQ=255)

                                      gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                              <  1:852960/93‑1 (MQ=255)

                                      gAGTGACTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                              <  1:1126539/93‑1 (MQ=255)

                                        gTGGCTGGTCCATATATGGCAAAAGCCCGGAAAAACCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAAGGCCTCTATGGGATACAAAGt                            >  2:2012928/1‑93 (MQ=255)

                                        gTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt                            <  1:1397864/93‑1 (MQ=255)

                                         tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                           >  1:777776/1‑93 (MQ=255)

                                         tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                           <  1:1024811/93‑1 (MQ=255)

                                           gCTTGTACATATATGGCAAAAGCCGGAAAAATCC‑G‑GACTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                         <  2:1884503/93‑1 (MQ=255)

                                            cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                        <  1:2086089/93‑1 (MQ=255)

                                            cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                        >  2:1520120/1‑93 (MQ=255)

                                            cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt                        >  1:1481620/1‑93 (MQ=255)

                                             tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAATCTTAGGGCCTCTATGGGCTACAAAGTCATTa                       <  1:2916445/93‑1 (MQ=255)

                                             tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                       >  2:3300711/1‑93 (MQ=255)

                                             tGGAACATATATGGCAAACGCCAGAAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                       <  2:63370/93‑1 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACACAGTCATTAt                      >  1:508743/1‑93 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      <  2:4749242/93‑1 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      <  2:3307059/93‑1 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      <  1:3480991/93‑1 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      <  2:1636641/93‑1 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      >  1:508741/1‑93 (MQ=255)

                                              ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                      >  1:3301713/1‑93 (MQ=255)

                                               gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                     <  2:2348704/93‑1 (MQ=255)

                                               gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                     <  2:4680445/93‑1 (MQ=255)

                                               gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                     <  1:2352706/93‑1 (MQ=255)

                                                tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGTGCTACAAAGTCATTATCg                    >  2:2970956/1‑93 (MQ=255)

                                                tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGTGCTACAAAGTCATTATCg                    >  2:2970955/1‑93 (MQ=255)

                                                tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                    <  1:2119259/93‑1 (MQ=255)

                                                tACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                    >  1:105707/1‑93 (MQ=255)

                                                 aCATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                   <  1:2497532/93‑1 (MQ=255)

                                                  cATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                  <  1:837688/93‑1 (MQ=255)

                                                  cATATATGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                  <  1:2074688/93‑1 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                >  2:4734310/1‑93 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                >  1:875851/1‑93 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                >  2:1542904/1‑93 (MQ=255)

                                                    tatatGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                >  1:1444537/1‑93 (MQ=255)

                                                     atatGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt               >  1:1822942/1‑93 (MQ=255)

                                                     atatGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt               <  1:1144018/93‑1 (MQ=255)

                                                       atGGCAAAAGCGCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg             <  2:235256/93‑1 (MQ=255)

                                                       atGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg             <  1:2281113/93‑1 (MQ=255)

                                                        tGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt            <  2:2052355/93‑1 (MQ=255)

                                                        tGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt            <  1:164173/93‑1 (MQ=255)

                                                        tGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt            >  2:3279773/1‑93 (MQ=255)

                                                        tGGCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt            >  1:4104442/1‑93 (MQ=255)

                                                         ggCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt           <  1:1461593/93‑1 (MQ=255)

                                                         ggCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt           <  2:1647124/93‑1 (MQ=255)

                                                         ggCAAAAGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt           <  2:326793/93‑1 (MQ=255)

                                                           cAAAAGCCCGGAAAATCC‑TGG‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat         <  1:332671/93‑1 (MQ=255)

                                                            aaaaGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatt        >  1:1413870/1‑93 (MQ=255)

                                                             aaaGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt       >  1:2033833/1‑93 (MQ=255)

                                                              aaGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt      >  1:2911528/1‑93 (MQ=255)

                                                               aGCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta     <  2:537388/93‑1 (MQ=255)

                                                                gCCTGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat    >  1:1179011/1‑93 (MQ=255)

                                                                gCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat    <  1:2275320/93‑1 (MQ=255)

                                                                gCCCGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat    >  1:3174822/1‑93 (MQ=255)

                                                                 cccGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCCAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt   <  1:2167410/93‑1 (MQ=255)

                                                                 cccGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt   <  1:3710238/93‑1 (MQ=255)

                                                                  ccGGAAAATCCGG‑G‑CTTCGCA‑GGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg  >  1:327859/1‑93 (MQ=255)

AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑C‑TCGCA‑GGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG  >  NC_000913/3957471‑3957626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`