| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,008,400 | +GAAA | coding (483/516 nt) | b4555 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,008,398 | 1 | . | A | 100.0% | 132.3 / NA | 40 | E161K (GAA→AAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (18/22); total (18/22) | |||||||||||
| * | NC_000913 | 4,008,398 | 2 | . | A | 100.0% | 134.6 / NA | 40 | E161K (GAA→AAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (18/22); total (18/22) | |||||||||||
| * | NC_000913 | 4,008,398 | 3 | . | G | 100.0% | 124.3 / NA | 40 | E161? (GAA→NAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (18/22); total (18/22) | |||||||||||
| * | NC_000913 | 4,008,398 | 4 | . | A | 100.0% | 137.6 / NA | 40 | E161K (GAA→AAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (18/22); total (18/22) | |||||||||||
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑TT‑‑G‑TGACGGGATGAACGACGCCGAAATGCT > NC_000913/4008309‑4008457 |||| gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGCTTCAAAAAGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a > 2:3326159/1‑93 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:3966728/93‑1 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 1:1782384/93‑1 (MQ=255) gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag < 1:1177000/93‑2 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 1:46973/1‑91 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 1:3511183/1‑91 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAAGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 1:3215869/1‑91 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa > 2:2281928/1‑90 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa > 2:3445805/1‑90 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa < 1:3329958/93‑4 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tt < 2:1756261/93‑1 (MQ=255) gtGGAAGTGATGGCGGGCGGCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑ttt < 2:1612774/92‑2 (MQ=255) cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑ttt < 2:2585349/93‑2 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttg > 1:3760002/1‑91 (MQ=255) ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttgg > 1:4328546/1‑90 (MQ=255) ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttgg > 1:1504553/1‑90 (MQ=255) gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttggt > 2:362797/1‑89 (MQ=255) gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttggt < 2:3225814/93‑5 (MQ=255) gtGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACggg < 1:3290333/92‑1 (MQ=255) aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACggg < 1:980410/93‑1 (MQ=255) tGGCGGGCGGCGTTTCAAAAGGCAATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGa < 2:2605564/93‑1 (MQ=255) ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGAt < 2:1250992/93‑1 (MQ=255) gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATg > 2:4734727/1‑93 (MQ=255) cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGa < 2:1009336/93‑1 (MQ=255) cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGa < 2:2641560/93‑1 (MQ=255) gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGaa < 1:1004691/93‑1 (MQ=255) gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGaa < 2:594135/93‑1 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAac > 2:2025077/1‑93 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTAGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAac > 2:1242468/1‑93 (MQ=255) gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacg < 1:3802206/93‑1 (MQ=255) cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacga < 1:2414018/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgac < 1:321200/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgac < 2:907022/93‑1 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgacg > 1:978131/1‑93 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgacg > 1:1848270/1‑93 (MQ=255) cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGc < 2:1666186/93‑1 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGcc > 1:1095282/1‑93 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGcc < 2:4673438/93‑1 (MQ=255) tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaa > 2:3850580/4‑93 (MQ=255) gcaaaaGGCCCTGCGCTGTAAGCGCTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaa < 2:3861309/90‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaaa > 1:2116878/3‑93 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaaa < 2:643823/91‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTT‑‑GTTGACGGGAGGAACTACGCCGAAAt > 2:3805337/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt > 2:2436174/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt > 2:208377/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt < 2:2079373/92‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt < 1:3137890/92‑1 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATg > 1:3644293/1‑93 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATg > 2:991364/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCt > 1:1869543/1‑93 (MQ=255) |||| GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑TT‑‑G‑TGACGGGATGAACGACGCCGAAATGCT > NC_000913/4008309‑4008457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |