Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,008,429 | +TG | coding (512/516 nt) | b4555 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,008,429 | 1 | . | T | 98.4% | 219.4 / ‑4.6 | 64 | L171S (TTG→TCG) | b4555 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (0/0); major base T (35/28); minor base C (1/0); total (36/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.81e-01 | |||||||||||
* | NC_000913 | 4,008,429 | 2 | . | G | 100.0% | 205.5 / NA | 64 | L171W (TTG→TGG) | b4555 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (36/28); total (36/28) |
TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑TT‑‑G‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGAAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCT > NC_000913/4008346‑4008503 || tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tt < 2:1756261/93‑1 (MQ=255) gtGGAAGTGATGGCGGGCGGCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑ttt < 2:1612774/92‑2 (MQ=255) cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑ttt < 2:2585349/93‑2 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttg > 1:3760002/1‑91 (MQ=255) ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttgg > 1:1504553/1‑90 (MQ=255) ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttgg > 1:4328546/1‑90 (MQ=255) gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttggt < 2:3225814/93‑5 (MQ=255) gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttggt > 2:362797/1‑89 (MQ=255) gtGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACggg < 1:3290333/92‑1 (MQ=255) aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACggg < 1:980410/93‑1 (MQ=255) tGGCGGGCGGCGTTTCAAAAGGCAATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGa < 2:2605564/93‑1 (MQ=255) ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGAt < 2:1250992/93‑1 (MQ=255) gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATg > 2:4734727/1‑93 (MQ=255) cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGa < 2:1009336/93‑1 (MQ=255) cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGa < 2:2641560/93‑1 (MQ=255) gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGaa < 1:1004691/93‑1 (MQ=255) gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGaa < 2:594135/93‑1 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAac > 2:2025077/1‑93 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTAGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAac > 2:1242468/1‑93 (MQ=255) gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacg < 1:3802206/93‑1 (MQ=255) cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacga < 1:2414018/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgac < 1:321200/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgac < 2:907022/93‑1 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgacg > 1:1848270/1‑93 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgacg > 1:978131/1‑93 (MQ=255) cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGc < 2:1666186/93‑1 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGcc > 1:1095282/1‑93 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGcc < 2:4673438/93‑1 (MQ=255) tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaa > 2:3850580/4‑93 (MQ=255) gcaaaaGGCCCTGCGCTGTAAGCGCTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaa < 2:3861309/90‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaaa > 1:2116878/3‑93 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaaa < 2:643823/91‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTT‑‑GTTGACGGGAGGAACTACGCCGAAAt > 2:3805337/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt < 2:2079373/92‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt > 2:208377/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt > 2:2436174/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt < 1:3137890/92‑1 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATg > 2:991364/1‑93 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATg > 1:3644293/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCt > 1:1869543/1‑93 (MQ=255) actgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATggg > 1:1016550/5‑93 (MQ=255) actgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATggg < 1:267191/89‑1 (MQ=255) ctgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGc > 2:4612409/4‑93 (MQ=255) ctgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGc < 1:3744933/90‑1 (MQ=255) ctgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATAATgcgc > 1:4680336/4‑93 (MQ=255) tgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCa > 1:2286020/3‑93 (MQ=255) tgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCa < 2:1794732/91‑1 (MQ=255) tgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCa > 1:665597/3‑93 (MQ=255) tgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCa < 1:4711744/91‑1 (MQ=255) tgggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCa > 2:2364535/3‑93 (MQ=255) gggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAg > 2:62315/2‑93 (MQ=255) ggCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGt < 1:1646592/93‑1 (MQ=255) cTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTgc < 1:381191/93‑2 (MQ=255) cTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTgc < 1:381190/93‑2 (MQ=255) tACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGGAG‑GGGAAAGGCTGCATTATGGGCAGTgcg > 2:970755/1‑91 (MQ=255) tACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAATGCTGCATTATGGGCAGTgcg > 1:3704512/1‑91 (MQ=255) tACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTgcg > 2:1579815/1‑91 (MQ=255) tACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTgcg > 1:59826/1‑91 (MQ=255) tACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGAAGTgcg > 1:1825793/1‑91 (MQ=255) gccTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCgcacc > 1:1272301/3‑93 (MQ=255) gccTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCgcacc > 2:2489388/3‑93 (MQ=255) g‑CTGAAAGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCgcacca < 1:2170429/93‑1 (MQ=255) cTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAg > 2:4601069/1‑93 (MQ=255) cTGAAGGATTGTATTGCG‑TTCGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAg > 2:4601068/1‑93 (MQ=255) tGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:1685417/1‑93 (MQ=255) tGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc < 1:963472/93‑1 (MQ=255) tGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 2:1165742/1‑93 (MQ=255) gAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg > 2:1517882/1‑93 (MQ=255) gAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg > 2:3491886/1‑93 (MQ=255) aGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc > 1:253634/1‑93 (MQ=255) aGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc < 1:3598158/93‑1 (MQ=255) ggATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:3354691/1‑93 (MQ=255) ggATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:2878223/1‑93 (MQ=255) ggATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt < 1:3876459/93‑1 (MQ=255) || TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑TT‑‑G‑TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGAAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCT > NC_000913/4008346‑4008503 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |