BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,997,285	(T)_6→7	coding (629/756 nt)	b2865 ←	putative lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,997,279	1	.	T	98.1%	754.2 / 4.6	215	coding (635/756 nt)	b2865	putative lipoprotein
Reads supporting (aligned to +/- strand): ref base . (3/1); new base T (94/117); total (97/118)
Fisher's exact test for biased strand distribution p-value = 3.30e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.00e-01

Only 100 of 240 total aligned reads displayed.

GCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTT  >  NC_000913/2997187‑2997366

ccAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑a                                                                                          >  2:1952373/2‑93 (MQ=255)

 cAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑t                                                                                        >  1:46181/1‑93 (MQ=255)

 cAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGATCCCCATAGTGGCG‑A‑t                                                                                        >  2:4013834/1‑93 (MQ=255)

  aaGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tt                                                                                       <  1:127291/93‑1 (MQ=255)

  aaGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tt                                                                                       >  1:3127955/1‑93 (MQ=255)

      aaCGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tttttt                                                                                   >  1:2512214/1‑93 (MQ=255)

      aaCGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tttttt                                                                                   >  1:747716/1‑93 (MQ=255)

          tAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tttttttgcc                                                                               <  2:407015/93‑5 (MQ=255)

          tAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑tttttttgcc                                                                               <  1:2961654/93‑5 (MQ=255)

            gCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCa                                                                              <  1:2519031/93‑1 (MQ=255)

             cGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAg                                                                             >  1:2111953/1‑93 (MQ=255)

             cGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAg                                                                             >  2:1981157/1‑93 (MQ=255)

               gATCAATTGCCGTTGCACGATAACGAATCTGGAAATGCAGGCGCACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAAcc                                                                           <  2:4211897/93‑1 (MQ=255)

                aTCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCt                                                                          <  1:3689619/93‑1 (MQ=255)

                  cAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTc                                                                        <  1:3996622/93‑1 (MQ=255)

                   aaTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCa                                                                       <  2:2077109/93‑1 (MQ=255)

                    aTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCAc                                                                      <  1:1718623/93‑1 (MQ=255)

                    aTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCAc                                                                      <  1:2762725/93‑1 (MQ=255)

                     ttGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCGCT‑TTTTTTGCCCAGCCTTCACg                                                                     >  2:1703154/1‑93 (MQ=255)

                        cccttGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCGTCCGAGCTCCCCTTAGCGGCGAA‑TTTTTTGCCCAGCCTTCACGCtt                                                                  >  2:2809220/4‑93 (MQ=255)

                        ccGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCtt                                                                  <  1:1020307/93‑1 (MQ=255)

                          gTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTg                                                                >  2:4707728/1‑93 (MQ=255)

                              cACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCa                                                            <  2:511217/93‑1 (MQ=255)

                               aCGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCat                                                           >  1:284580/1‑93 (MQ=255)

                               aCGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCat                                                           >  1:1685814/1‑93 (MQ=255)

                                cGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCatt                                                          <  1:48255/93‑1 (MQ=255)

                                   tAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCattatt                                                       <  2:3205289/93‑1 (MQ=255)

                                    aaCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTAttt                                                      >  2:893182/1‑93 (MQ=255)

                                     aCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTa                                                     <  1:348938/93‑1 (MQ=255)

                                     aCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTa                                                     >  1:3641639/1‑93 (MQ=255)

                                      cGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTAc                                                    <  2:3352493/93‑1 (MQ=255)

                                       gAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTAcc                                                   >  2:1439944/1‑93 (MQ=255)

                                         aTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAg                                                 >  1:299337/1‑93 (MQ=255)

                                         aTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAg                                                 >  1:4707983/1‑93 (MQ=255)

                                           cTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGTG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCa                                               >  1:1853265/1‑93 (MQ=255)

                                           cTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCa                                               <  1:1056822/93‑1 (MQ=255)

                                            tGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCAt                                              <  2:3572167/93‑1 (MQ=255)

                                             ggAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATc                                             <  2:2643147/93‑1 (MQ=255)

                                              gAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCg                                            <  1:3206243/93‑1 (MQ=255)

                                               aaaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgt                                           <  2:4174537/93‑1 (MQ=255)

                                               aaaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgt                                           >  2:550517/1‑93 (MQ=255)

                                                aaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtg                                          <  1:3523925/93‑1 (MQ=255)

                                                aaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtg                                          >  2:4419678/1‑93 (MQ=255)

                                                     aGGCGAACAGATAACGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACTCTTTGCCCATTATTTACCAGCATCGTGTTAtt                                     >  2:1830725/1‑93 (MQ=255)

                                                        cGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATg                                  <  2:3123056/93‑1 (MQ=255)

                                                         gAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATgg                                 <  1:2747278/93‑1 (MQ=255)

                                                         gAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATgg                                 <  1:2679677/93‑1 (MQ=255)

                                                         gAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATgg                                 >  1:3365205/1‑93 (MQ=255)

                                                          aaCAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATggg                                >  2:4525257/1‑93 (MQ=255)

                                                          aaCAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATggg                                >  2:1385285/1‑93 (MQ=255)

                                                           aCAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGc                               <  2:707268/93‑1 (MQ=255)

                                                           aCAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGc                               <  2:343438/93‑1 (MQ=255)

                                                            cAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCg                              >  1:486697/1‑93 (MQ=255)

                                                            cAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCg                              >  1:1999332/1‑93 (MQ=255)

                                                            cAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCg                              >  2:405126/1‑93 (MQ=255)

                                                              gATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTa                            >  2:242234/1‑93 (MQ=255)

                                                              gATGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTa                            <  1:2872224/93‑1 (MQ=255)

                                                              gATGCCGCATCCGCGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTa                            >  1:221123/1‑93 (MQ=255)

                                                               aTGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTaa                           <  1:4076851/93‑1 (MQ=255)

                                                               aTGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTaa                           <  1:3593640/93‑1 (MQ=255)

                                                               aTGCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCACATTATTTACCAGCATCGTGTCATTATGGGCGTaa                           <  1:2386137/93‑1 (MQ=255)

                                                                 gCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGc                         >  2:3825283/1‑93 (MQ=255)

                                                                 gCCGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGc                         <  1:792206/93‑1 (MQ=255)

                                                                  ccGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGcc                        >  2:2241681/1‑93 (MQ=255)

                                                                   cGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCg                       <  2:1718021/93‑1 (MQ=255)

                                                                   cGCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCg                       <  2:4423693/93‑1 (MQ=255)

                                                                    gCATCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgt                      <  2:4657500/93‑1 (MQ=255)

                                                                     cATCCGTGCCCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgta                     <  1:3890653/93‑1 (MQ=255)

                                                                      aTCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                    >  1:1741118/1‑93 (MQ=255)

                                                                      aTCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                    <  1:1111182/93‑1 (MQ=255)

                                                                      aTCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                    >  2:686765/1‑93 (MQ=255)

                                                                      aTCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                    <  2:1521892/93‑1 (MQ=255)

                                                                       tCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                   <  2:2713765/93‑1 (MQ=255)

                                                                       tCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                   >  1:1441646/1‑93 (MQ=255)

                                                                       tCCGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                   <  2:4279071/93‑1 (MQ=255)

                                                                        ccGTGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatg                  >  1:3838724/1‑93 (MQ=255)

                                                                           tGCTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgtaa               <  1:684616/93‑1 (MQ=255)

                                                                             cTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATc             <  1:4663978/93‑1 (MQ=255)

                                                                             cTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATc             <  1:4253063/93‑1 (MQ=255)

                                                                             cTCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATc             >  2:1109684/1‑93 (MQ=255)

                                                                              tCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCTTAATGTAATCt            >  2:623112/1‑93 (MQ=255)

                                                                              tCCCCATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCt            <  2:3090659/93‑1 (MQ=255)

                                                                                cccATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATTGGCGTAAGCCGTAATATAATCtta          >  2:2972619/1‑92 (MQ=255)

                                                                                cccATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTc          >  1:2039020/1‑93 (MQ=255)

                                                                                cccATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTc          <  1:40789/93‑1 (MQ=255)

                                                                                 ccATAGTGGCG‑ATTTTTTTGCCCGGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCa         <  2:2588312/93‑1 (MQ=255)

                                                                                 ccATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCa         <  2:4563812/93‑1 (MQ=255)

                                                                                  cATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAc        >  1:1891107/1‑93 (MQ=255)

                                                                                  cATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAc        >  1:3239109/1‑93 (MQ=255)

                                                                                  cATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAc        >  1:2587837/1‑93 (MQ=255)

                                                                                  cATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAc        <  2:4618162/93‑1 (MQ=255)

                                                                                  cATAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAc        <  1:4344723/93‑1 (MQ=255)

                                                                                   aTAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACt       <  1:2282052/93‑1 (MQ=255)

                                                                                   aTAGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCAGTAATGTCATCTTCACt       >  1:3305646/1‑93 (MQ=255)

                                                                                     aGTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtgt     <  2:1593731/93‑1 (MQ=255)

                                                                                      gTGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtgtg    >  1:2618016/1‑93 (MQ=255)

                                                                                       tGGCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTgtgt   <  2:131886/93‑1 (MQ=255)

                                                                                        ggCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGtt  >  1:3369486/1‑93 (MQ=255)

                                                                                        ggCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGtt  >  2:876672/1‑93 (MQ=255)

                                                                                        ggCG‑ATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGAATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGtt  <  1:910359/93‑1 (MQ=255)

GCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGTGGCG‑A‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTT  >  NC_000913/2997187‑2997366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`