New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 4008398 | 43 (0.240) | 36 (0.210) +AAGA |
17/172 | 8.7 | 46.4% | coding (481/516 nt) | b4555 | hypothetical protein |
? | NC_000913 | 4008399 = | 43 (0.240) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
Rejected: Coverage evenness skew score above cutoff. |
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑TT‑‑G‑TGACGGGATGAACGACGCCGAAATGCT > NC_000913/4008309‑4008457 | gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGCTTCAAAAAGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a > 2:3326159/1‑93 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 2:3966728/93‑1 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aa < 1:1782384/93‑1 (MQ=255) gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag < 1:1177000/93‑2 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 1:46973/1‑91 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 1:3511183/1‑91 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAAGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 1:3215869/1‑91 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa > 2:2281928/1‑90 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa > 2:3445805/1‑90 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa < 1:3329958/93‑4 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tt < 2:1756261/93‑1 (MQ=255) gtGGAAGTGATGGCGGGCGGCGTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑ttt < 2:1612774/92‑2 (MQ=255) cTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑ttt < 2:2585349/93‑2 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttg > 1:3760002/1‑91 (MQ=255) ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttgg > 1:4328546/1‑90 (MQ=255) ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttgg > 1:1504553/1‑90 (MQ=255) gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttggt > 2:362797/1‑89 (MQ=255) gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑tttggt < 2:3225814/93‑5 (MQ=255) gtGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACggg < 1:3290333/92‑1 (MQ=255) aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACggg < 1:980410/93‑1 (MQ=255) tGGCGGGCGGCGTTTCAAAAGGCAATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGa < 2:2605564/93‑1 (MQ=255) ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGAt < 2:1250992/93‑1 (MQ=255) gcgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATg > 2:4734727/1‑93 (MQ=255) cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGa < 2:1009336/93‑1 (MQ=255) cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGa < 2:2641560/93‑1 (MQ=255) gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGaa < 1:1004691/93‑1 (MQ=255) gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGaa < 2:594135/93‑1 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAac > 2:2025077/1‑93 (MQ=255) ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTAGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAac > 2:1242468/1‑93 (MQ=255) gcggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacg < 1:3802206/93‑1 (MQ=255) cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacga < 1:2414018/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgac < 1:321200/93‑1 (MQ=255) ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgac < 2:907022/93‑1 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgacg > 1:978131/1‑93 (MQ=255) gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAacgacg > 1:1848270/1‑93 (MQ=255) cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGc < 2:1666186/93‑1 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGcc > 1:1095282/1‑93 (MQ=255) gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGcc < 2:4673438/93‑1 (MQ=255) tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaa > 2:3850580/4‑93 (MQ=255) gcaaaaGGCCCTGCGCTGTAAGCGCTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaa < 2:3861309/90‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaaa > 1:2116878/3‑93 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGaaa < 2:643823/91‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTT‑‑GTTGACGGGAGGAACTACGCCGAAAt > 2:3805337/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt > 2:2436174/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt > 2:208377/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt < 2:2079373/92‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAAt < 1:3137890/92‑1 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATg > 1:3644293/1‑93 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATg > 2:991364/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑TTTGG‑TGACGGGATGAACGACGCCGAAATGCt > 1:1869543/1‑93 (MQ=255) | GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑TT‑‑G‑TGACGGGATGAACGACGCCGAAATGCT > NC_000913/4008309‑4008457 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |