Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,949,4110AC66.1% 813.2 / inf 451N197H (AAC→CAC) yecDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (90/63);  new base C (183/115);  total (273/178)
Fisher's exact test for biased strand distribution p-value = 6.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 462 total aligned reads displayed.

TGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATCACCAGCCTTGAAGAGTATGCCCGCCACT  >  NC_000913/1949321‑1949503
                                                                                          |                                                                                            
  tAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAAcgc                                                                                          >  1:4715998/1‑93 (MQ=255)
  tAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAAcgc                                                                                          <  1:3923616/93‑1 (MQ=255)
      gccgccAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTa                                                                                      <  1:4465612/93‑1 (MQ=255)
       ccgccAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTAt                                                                                     <  2:1867003/93‑1 (MQ=255)
       ccgccAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTAt                                                                                     <  2:816998/93‑1 (MQ=255)
       ccgccAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTAt                                                                                     >  2:4654638/1‑93 (MQ=255)
           cAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGAtt                                                                                 >  1:4510014/1‑93 (MQ=255)
             gcgcCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTa                                                                               <  2:4355313/93‑1 (MQ=255)
             gcgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTa                                                                               >  1:1082692/1‑93 (MQ=255)
             gcgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTa                                                                               >  1:772785/1‑93 (MQ=255)
              cgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCGCGCGTTATGATTTAc                                                                              <  2:1592629/93‑1 (MQ=255)
              cgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTAc                                                                              <  1:314843/93‑1 (MQ=255)
              cgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTAc                                                                              >  1:2008401/1‑93 (MQ=255)
               gcCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACa                                                                             >  1:195139/1‑93 (MQ=255)
               gcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACa                                                                             <  1:1474523/93‑1 (MQ=255)
               gcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACa                                                                             >  2:303312/1‑93 (MQ=255)
                ccGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACAt                                                                            <  2:3375867/93‑1 (MQ=255)
                ccGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACAt                                                                            >  1:1650041/1‑93 (MQ=255)
                 cGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATc                                                                           <  2:441023/93‑1 (MQ=255)
                 cGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATc                                                                           <  2:4593883/93‑1 (MQ=255)
                  gAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCg                                                                          <  2:2507033/93‑1 (MQ=255)
                   agcagcACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCgg                                                                         <  1:460286/93‑1 (MQ=255)
                   agcaacACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCgg                                                                         <  1:2812533/93‑1 (MQ=255)
                    gcagcaCAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGt                                                                        >  1:2180232/1‑93 (MQ=255)
                    gcagcaCAATAACAGTATCAACCATATCTACCCGCGCATCCCCCGTATGCGGCGCGCGGACGAGCTCCTCAACGCGTTATGATTTACAtttgt                                                                        >  2:4734241/1‑89 (MQ=255)
                    gcaacaCAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGt                                                                        >  1:359284/1‑93 (MQ=255)
                     caacacaATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTc                                                                       <  1:229514/90‑1 (MQ=255)
                      aacacaATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCt                                                                      >  1:1872695/3‑93 (MQ=255)
                         acaATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGcc                                                                   <  1:2637264/93‑1 (MQ=255)
                          caATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCg                                                                  >  1:1592112/1‑93 (MQ=255)
                          caATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCg                                                                  <  2:1689138/93‑1 (MQ=255)
                           aaTAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGc                                                                 >  1:1007355/1‑93 (MQ=255)
                            aTAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCa                                                                >  2:3961570/1‑93 (MQ=255)
                             tAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCaa                                                               >  1:2658530/1‑93 (MQ=255)
                             tAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCaa                                                               >  2:3650477/1‑93 (MQ=255)
                              aaCAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAAt                                                              >  1:4293010/1‑93 (MQ=255)
                              aaCAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAAt                                                              >  2:1794864/1‑93 (MQ=255)
                               aCAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATg                                                             <  1:2926795/93‑1 (MQ=255)
                                  gTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTc                                                          >  2:1020667/1‑93 (MQ=255)
                                     tCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCa                                                       >  1:3004896/1‑93 (MQ=255)
                                       aaCCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATc                                                     >  1:1288858/1‑93 (MQ=255)
                                       aaCCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATc                                                     >  2:1321112/1‑93 (MQ=255)
                                        atcATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATcc                                                    >  1:1409267/3‑93 (MQ=255)
                                         ccATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCt                                                   >  1:3385287/1‑93 (MQ=255)
                                            tatCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTaaa                                                >  1:2513041/1‑93 (MQ=255)
                                            tatCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTaaa                                                >  2:1452587/1‑93 (MQ=255)
                                             atCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAAt                                               >  2:2899632/1‑93 (MQ=255)
                                              tCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCCTCCTAAATg                                              >  2:883006/1‑93 (MQ=255)
                                               cTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATgg                                             >  2:1136215/1‑93 (MQ=255)
                                                tACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATggg                                            >  2:1290269/1‑93 (MQ=255)
                                                tACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATggg                                            <  1:1526321/93‑1 (MQ=255)
                                                tACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATggg                                            <  2:2018910/93‑1 (MQ=255)
                                                tACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATggg                                            >  2:15141/1‑93 (MQ=255)
                                                 aCCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGt                                           <  2:4319622/93‑1 (MQ=255)
                                                 aCCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGt                                           >  1:3509107/1‑93 (MQ=255)
                                                 aCCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGt                                           <  2:3728180/93‑1 (MQ=255)
                                                  cccGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTg                                          >  2:705904/1‑93 (MQ=255)
                                                    cgcgCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCg                                        >  1:660824/1‑93 (MQ=255)
                                                     gcgcATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCgg                                       >  1:2866800/1‑93 (MQ=255)
                                                     gcgcATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCgg                                       >  2:4064114/1‑93 (MQ=255)
                                                      cgcATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGt                                      <  2:1937024/93‑1 (MQ=255)
                                                       gcATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGtt                                     <  1:749899/93‑1 (MQ=255)
                                                       gcATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGtt                                     >  1:2439422/1‑93 (MQ=255)
                                                         aTCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTgg                                   <  1:3704851/93‑1 (MQ=255)
                                                         aTCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTgg                                   <  2:1739653/93‑1 (MQ=255)
                                                          tCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTggg                                  <  2:4250826/93‑1 (MQ=255)
                                                          tCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTggg                                  <  2:3225245/93‑1 (MQ=255)
                                                          tCGCCCGTGTGCGTAGCGTGGAAGAGAACCTCAACGCGTTATGATTTACATAGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTggg                                  >  1:4021509/1‑93 (MQ=255)
                                                            gCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTgggta                                >  1:4411444/1‑91 (MQ=255)
                                                            gCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTgggta                                >  2:1365579/1‑91 (MQ=255)
                                                             cccGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTAt                               >  1:584951/1‑93 (MQ=255)
                                                              ccGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATc                              >  2:733936/1‑93 (MQ=255)
                                                              ccGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATc                              <  1:415401/93‑1 (MQ=255)
                                                              cagtgtGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACAGCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATc                              <  1:2223784/91‑1 (MQ=255)
                                                               cGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTTGCATCCTAAATGGGTGCGGTTGGGTATCa                             >  1:3236340/1‑93 (MQ=255)
                                                               cGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCa                             >  1:4261296/1‑93 (MQ=255)
                                                                 tgtgCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCAcc                           >  1:176168/1‑93 (MQ=255)
                                                                 tgtgCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATTAcc                           <  2:4138742/93‑1 (MQ=255)
                                                                 tgtgCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTAGCATCCTAAATGGGTGCGGTTGGGGATCAcc                           >  2:2629308/1‑93 (MQ=255)
                                                                   tgCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAg                         >  2:4499170/1‑93 (MQ=255)
                                                                   tgCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAg                         >  2:564204/1‑93 (MQ=255)
                                                                   tgCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATCACCAg                         <  1:1807415/93‑1 (MQ=255)
                                                                    gCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGc                        >  2:3903249/1‑93 (MQ=255)
                                                                    gCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGc                        >  1:802403/1‑93 (MQ=255)
                                                                      gTAGCGTGGAAGAGATCTTTCACGCGTTATGATTTACATCGGTCTGCCGTAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCATCAGCCt                      >  2:4212845/1‑93 (MQ=255)
                                                                      gTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGCCt                      >  2:1225855/1‑93 (MQ=255)
                                                                      gTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGCCt                      >  2:366857/1‑93 (MQ=255)
                                                                      gTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGCCt                      <  2:2269601/93‑1 (MQ=255)
                                                                      gTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGCCt                      >  2:2230954/1‑93 (MQ=255)
                                                                      gTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATCACCAGCCt                      >  2:3152755/1‑93 (MQ=255)
                                                                       tAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGCCtt                     <  2:3057390/93‑1 (MQ=255)
                                                                         gCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGCCTTGa                   <  2:2725300/93‑1 (MQ=255)
                                                                          cGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATCACCAGCCTTGaa                  <  2:2764911/93‑1 (MQ=255)
                                                                           gTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATCACCAGCCTTGAag                 <  1:3765133/93‑1 (MQ=255)
                                                                             ggAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATCACCAGCCTTGAagag               >  2:4425892/1‑93 (MQ=255)
                                                                                agagATCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGCCTTGAAGAGTAt            >  2:2117898/1‑93 (MQ=255)
                                                                                 gagaTCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGCCTTGAAGAGTATg           >  2:2067572/1‑93 (MQ=255)
                                                                                   gaTCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATCACCAGCCTTGAAGAGTATGcc         <  2:3463281/93‑1 (MQ=255)
                                                                                   gaTCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATCACCAGCCTTGAAGAGTATGcc         <  1:50679/93‑1 (MQ=255)
                                                                                    aTCCTTCACGCGTTATGATTTACATCGGTCTGCCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGTATCACCAGCCTTGAAGAGTATGccc        >  2:2856586/1‑93 (MQ=255)
                                                                                          |                                                                                            
TGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCGCATCCTAAATGGGTGCGGTTGGGGATCACCAGCCTTGAAGAGTATGCCCGCCACT  >  NC_000913/1949321‑1949503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑