Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,555,020 A→G M280T (ATG→ACG)  yjiE ← putative transcriptional regulator LYSR‑type

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,555,0200AG98.3% 737.3 / 0.9 232M280T (ATG→ACG) yjiEputative transcriptional regulator LYSR‑type
Reads supporting (aligned to +/- strand):  ref base A (1/3);  new base G (114/114);  total (115/117)
Fisher's exact test for biased strand distribution p-value = 6.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01

Only 100 of 238 total aligned reads displayed.

TGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCG  >  NC_000913/4554930‑4555109
                                                                                          |                                                                                         
   gACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCgg                                                                                      <  1:1973421/93‑1 (MQ=255)
     cGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTa                                                                                    >  2:472173/1‑93 (MQ=255)
      gCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTAt                                                                                   <  2:1185583/93‑1 (MQ=255)
         ggAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCa                                                                                >  1:1480523/1‑93 (MQ=255)
          gagaATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCAt                                                                               >  1:3044444/1‑93 (MQ=255)
          gagaATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCAt                                                                               <  2:3023627/93‑1 (MQ=255)
           agaATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATa                                                                              <  2:1005476/93‑1 (MQ=255)
           agaATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATa                                                                              <  1:3765479/93‑1 (MQ=255)
            gaATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAg                                                                             <  1:4747027/93‑1 (MQ=255)
              aTGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGc                                                                           >  1:359474/1‑93 (MQ=255)
              aTGACAGCAAAGCACAATCTCCGGCTAGCAAAGTTCACAACAGAAGCGTTCGGCACCGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGc                                                                           <  2:4363348/93‑1 (MQ=255)
               tGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGcc                                                                          >  2:267731/1‑93 (MQ=255)
                gTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCt                                                                         >  1:3644930/1‑93 (MQ=255)
                gTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCt                                                                         >  1:1209295/1‑93 (MQ=255)
                  cAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGa                                                                       <  2:2190648/93‑1 (MQ=255)
                  cAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGa                                                                       <  2:4606340/93‑1 (MQ=255)
                  cAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGa                                                                       <  2:1256090/93‑1 (MQ=255)
                   aGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGaa                                                                      >  2:606789/1‑93 (MQ=255)
                   aGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGaa                                                                      >  1:3493591/1‑93 (MQ=255)
                    gCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAAt                                                                     >  1:3917243/1‑93 (MQ=255)
                    gCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAAt                                                                     >  1:2920427/1‑93 (MQ=255)
                       aaGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCgg                                                                  <  2:342872/93‑1 (MQ=255)
                       aaGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCgg                                                                  >  1:1678078/1‑93 (MQ=255)
                       aaGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCgg                                                                  <  1:157023/93‑1 (MQ=255)
                       aaGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCgg                                                                  >  1:2676853/1‑93 (MQ=255)
                        aGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGACTCggg                                                                 >  1:58506/1‑93 (MQ=255)
                        aGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCggg                                                                 >  2:4511484/1‑93 (MQ=255)
                        aGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCggg                                                                 >  2:478101/1‑93 (MQ=255)
                        aGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCggg                                                                 >  1:1288425/1‑93 (MQ=255)
                         gCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGa                                                                >  1:2370340/1‑93 (MQ=255)
                           ccaATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATc                                                              <  2:1435078/92‑1 (MQ=255)
                              aTCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCAcc                                                           >  2:2334968/1‑93 (MQ=255)
                               tctcCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCa                                                          <  1:3330882/93‑1 (MQ=255)
                                ctcCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAg                                                         >  1:858690/1‑93 (MQ=255)
                                 tcCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGt                                                        <  1:2797090/93‑1 (MQ=255)
                                 tcCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGt                                                        <  1:4364119/93‑1 (MQ=255)
                                 tcCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGt                                                        <  1:757241/93‑1 (MQ=255)
                                   cAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTc                                                      >  1:4462562/1‑93 (MQ=255)
                                   cAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTc                                                      >  1:1652056/1‑93 (MQ=255)
                                   cAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTc                                                      <  2:2479091/93‑1 (MQ=255)
                                   cAGCTCACGCAGATCCCGCCAGAAGCGTTCGGCAACGGGATTCATGCAGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAgata                                                      <  2:4209907/93‑4 (MQ=255)
                                    aGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCg                                                     >  1:3030615/1‑93 (MQ=255)
                                     gCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGt                                                    >  1:612684/1‑93 (MQ=255)
                                     gCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGt                                                    >  2:3611989/1‑93 (MQ=255)
                                      cTCGCGCAGGTCACGCCATAACCTTTCGGCCACGGGATTCATGCGGGCATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTc                                                   <  1:1008708/93‑1 (MQ=255)
                                       tCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTcc                                                  >  2:1461341/1‑93 (MQ=255)
                                         gcgcAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGGATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCg                                                >  2:4591927/1‑93 (MQ=255)
                                           gcAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGAt                                              >  2:2069773/1‑93 (MQ=255)
                                            cAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGAtt                                             <  1:3017605/93‑1 (MQ=255)
                                             aGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTc                                            <  2:3632830/93‑1 (MQ=255)
                                              gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCa                                           >  1:12143/1‑93 (MQ=255)
                                              gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCa                                           >  1:3183702/1‑93 (MQ=255)
                                              gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCa                                           >  2:1261884/1‑93 (MQ=255)
                                              gTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCa                                           >  1:2911956/1‑93 (MQ=255)
                                               ttCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAg                                          >  1:2105234/1‑93 (MQ=255)
                                                  aCGCCAGAAGCTTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTAc                                       <  1:1462401/93‑1 (MQ=255)
                                                   cGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACa                                      <  2:42060/93‑1 (MQ=255)
                                                    gCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACaa                                     <  1:3853998/93‑1 (MQ=255)
                                                    gCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACaa                                     >  2:3035061/1‑93 (MQ=255)
                                                      cAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACg                                   >  2:3223784/1‑93 (MQ=255)
                                                       aGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGa                                  <  1:35700/93‑1 (MQ=255)
                                                       aGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGa                                  >  1:4149025/1‑93 (MQ=255)
                                                         aaGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGACCACCAGTTCGTCCCGATTCAGTACAACGAGc                                >  2:4056868/1‑93 (MQ=255)
                                                          aGCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCt                               <  2:1838633/93‑1 (MQ=255)
                                                           gCGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCtt                              <  2:4181604/93‑1 (MQ=255)
                                                            cGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTc                             <  1:2305609/93‑1 (MQ=255)
                                                            cGTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGCTCGTCCCGATTCAGTACAACGAGCTTc                             <  1:4067421/93‑1 (MQ=255)
                                                             gTTCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTcc                            <  1:3156682/93‑1 (MQ=255)
                                                              ttCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTccc                           >  1:2232023/1‑93 (MQ=255)
                                                              ttCGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTccc                           <  2:1723439/93‑1 (MQ=255)
                                                                cGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGc                         >  1:2160631/1‑93 (MQ=255)
                                                                cGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGc                         >  1:3361391/1‑93 (MQ=255)
                                                                cGGCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGc                         <  2:790925/93‑1 (MQ=255)
                                                                 ggCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCt                        <  1:104846/93‑1 (MQ=255)
                                                                 ggCAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCt                        >  2:1812586/1‑93 (MQ=255)
                                                                  ggcaCGGGATGTATGCTGGTATTTGTTCTGTCTGCATAGGCCTGAATCGGGATCCCCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTg                       <  1:4107589/90‑1 (MQ=255)
                                                                   cAACGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGc                      >  1:3307927/1‑93 (MQ=255)
                                                                      cGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGaa                   <  2:2148617/93‑1 (MQ=255)
                                                                      cGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGaa                   <  2:3364920/93‑1 (MQ=255)
                                                                      cGGGATTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGaa                   >  2:1349549/1‑93 (MQ=255)
                                                                          aTTCATGCGGGTATTCGTCCGGTATGGATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTc               <  1:2757380/93‑1 (MQ=255)
                                                                          aTTCATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTc               >  2:2560719/1‑93 (MQ=255)
                                                                             cATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttg            >  2:2363569/1‑93 (MQ=255)
                                                                             cATGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttg            >  2:1884050/1‑93 (MQ=255)
                                                                              aTGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgt           <  2:263235/93‑1 (MQ=255)
                                                                              aTGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgt           >  1:1806296/1‑93 (MQ=255)
                                                                              aTGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgt           >  2:1517365/1‑93 (MQ=255)
                                                                              aTGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgt           >  2:1265752/1‑93 (MQ=255)
                                                                               tGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgtt          <  2:1391526/93‑1 (MQ=255)
                                                                               tGCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGATTCCCGCTGCGAATTTCttgtt          >  2:2740123/1‑93 (MQ=255)
                                                                                gCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgttg         <  2:1923242/93‑1 (MQ=255)
                                                                                gCGGGTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCttgttg         <  1:235550/93‑1 (MQ=255)
                                                                                  gggTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGa       >  1:974060/1‑93 (MQ=255)
                                                                                  gggTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGa       >  2:4492235/1‑93 (MQ=255)
                                                                                    gTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATg     <  2:3783791/93‑1 (MQ=255)
                                                                                    gTATTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATg     <  2:3631771/93‑1 (MQ=255)
                                                                                     tATTCGTCCGGTATGCATAGGCCTGAATCGGGATCCCCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATgg    <  1:1067575/93‑1 (MQ=255)
                                                                                      aTTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGc   <  1:4568629/93‑1 (MQ=255)
                                                                                      aTTCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGc   >  2:574250/1‑93 (MQ=255)
                                                                                       ttCGTCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCg  <  2:2927153/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGCGACGCTGGAGAATGTCAGCTAAGCACAATCTCCAGCTCGCGCAGTTCACGCCAGAAGCGTTCGGCAACGGGATTCATGCGGGTATTCATCCGGTATGCATAGGCCTGAATCGGGATCACCAGTTCGTCCCGATTCAGTACAACGAGCTTCCCGCTGCGAATTTCTTGTTGGATGGCG  >  NC_000913/4554930‑4555109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: