BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	652,748	A→G	T431A (ACC→GCC)	citA →	putative sensor‑type protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	652,748	0	A	G	100.0%	465.8 / NA	144	T431A (ACC→GCC)	citA	putative sensor‑type protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (75/69); total (75/69)

Only 100 of 150 total aligned reads displayed.

GGTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCACCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTA  >  NC_000913/652658‑652837

ggTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGcc                                                                                         <  2:4145766/93‑1 (MQ=255)

  tAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGa                                                                                       >  2:1327291/1‑93 (MQ=255)

   aaaGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAg                                                                                      <  1:3831913/93‑1 (MQ=255)

    aaGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGt                                                                                     >  2:4519124/1‑93 (MQ=255)

      gTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGttt                                                                                   <  1:769898/93‑1 (MQ=255)

        gCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGc                                                                                 <  2:507573/93‑1 (MQ=255)

          aGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAg                                                                               >  2:2482864/1‑93 (MQ=255)

          aGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAg                                                                               >  2:2598464/1‑93 (MQ=255)

          aGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAg                                                                               >  1:1648403/1‑93 (MQ=255)

          aGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAg                                                                               >  2:3683068/1‑93 (MQ=255)

           gcgcgcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCTCCACGACTGGATAGCGCCGAGCCTGCAGc                                                                              >  1:2179714/1‑93 (MQ=255)

            cgcgcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGcc                                                                             <  2:2210748/93‑1 (MQ=255)

               tcccGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCAtt                                                                          <  1:135964/92‑1 (MQ=255)

               gcCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCAtt                                                                          <  1:4184803/93‑1 (MQ=255)

                cccGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtg                                                                         >  1:1927048/1‑93 (MQ=255)

                 ccGGGAACTGGGGCTAAAAATGATCATTGTCCCCTGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtgt                                                                        <  1:1114332/93‑1 (MQ=255)

                 ccGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtgt                                                                        <  2:2007474/93‑1 (MQ=255)

                  cGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtgtg                                                                       >  2:3261780/1‑93 (MQ=255)

                  cGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATtgtg                                                                       <  2:2682264/93‑1 (MQ=255)

                   gggAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTgg                                                                      <  1:1882233/93‑1 (MQ=255)

                   gggAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTgg                                                                      <  1:2895653/93‑1 (MQ=255)

                   gggAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTgg                                                                      >  2:2012531/1‑93 (MQ=255)

                   gggAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTgg                                                                      >  2:4432814/1‑93 (MQ=255)

                   gggAACTGGGGCTAAAAATGATCATTGGCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTgg                                                                      <  2:1408430/93‑1 (MQ=255)

                    ggAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTggg                                                                     >  2:3050897/1‑93 (MQ=255)

                    ggAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTggg                                                                     >  2:2767817/1‑93 (MQ=255)

                    ggAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTggg                                                                     <  2:2983276/93‑1 (MQ=255)

                     gAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGc                                                                    <  1:508143/93‑1 (MQ=255)

                      aaCTGGGGCTAAAAATTATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCa                                                                   >  2:4294402/1‑93 (MQ=255)

                      aaCTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCa                                                                   >  2:1773784/1‑93 (MQ=255)

                       aCTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGaaa                                                                  >  2:844924/1‑93 (MQ=255)

                       aCTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCaa                                                                  <  1:2995913/93‑1 (MQ=255)

                         tGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAAtt                                                                >  2:3791303/1‑93 (MQ=255)

                          ggggCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAAttt                                                               >  2:903837/1‑93 (MQ=255)

                           gggCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTa                                                              >  2:767695/1‑93 (MQ=255)

                            ggCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTAc                                                             >  1:204381/1‑93 (MQ=255)

                            ggCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTAc                                                             <  1:2272541/93‑1 (MQ=255)

                              gtAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACtt                                                           <  1:4623199/92‑1 (MQ=255)

                              cTAAAAATGATCATTGGCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACtt                                                           <  1:3288872/93‑1 (MQ=255)

                               tAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTg                                                          >  2:4082206/1‑93 (MQ=255)

                               tAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTg                                                          >  2:3776343/1‑93 (MQ=255)

                               tAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTg                                                          >  2:2993099/1‑93 (MQ=255)

                                 aaaaTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGAt                                                        >  2:1506540/1‑93 (MQ=255)

                                  aaaTTATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATa                                                       <  1:1163375/93‑1 (MQ=255)

                                   aaTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATaa                                                      <  1:3622868/93‑1 (MQ=255)

                                   aaTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATaa                                                      >  1:180089/1‑93 (MQ=255)

                                    aTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAAc                                                     >  2:245272/1‑93 (MQ=255)

                                    aTGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAAc                                                     <  1:3215275/93‑1 (MQ=255)

                                       aTCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGTTAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGcc                                                  >  1:242090/1‑93 (MQ=255)

                                        tCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCt                                                 <  2:3845672/93‑1 (MQ=255)

                                        tCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCt                                                 >  1:2116530/1‑93 (MQ=255)

                                          aTTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTc                                               <  1:1449693/93‑1 (MQ=255)

                                          aTTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTc                                               >  1:4150223/1‑93 (MQ=255)

                                          aTTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTc                                               <  2:4163267/93‑1 (MQ=255)

                                           ttGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCg                                              >  2:4627163/1‑93 (MQ=255)

                                             gTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGaa                                            >  1:4139974/1‑93 (MQ=255)

                                              tCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAag                                           >  2:4178254/1‑93 (MQ=255)

                                               ccccGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagc                                          >  2:3739521/1‑93 (MQ=255)

                                                cccGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagcc                                         <  2:190148/93‑1 (MQ=255)

                                                cccGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagcc                                         <  2:2341517/93‑1 (MQ=255)

                                                cccGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagcc                                         >  2:24781/1‑93 (MQ=255)

                                                 ccGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagcca                                        <  1:3770848/93‑1 (MQ=255)

                                                  cGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagccag                                       <  2:1638729/93‑1 (MQ=255)

                                                   ggTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagccagc                                      >  2:509082/1‑93 (MQ=255)

                                                    gTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagccagcc                                     <  1:4020723/93‑1 (MQ=255)

                                                    gTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagccagcc                                     <  2:572928/93‑1 (MQ=255)

                                                    gTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAagccagcc                                     <  1:4483320/93‑1 (MQ=255)

                                                     tAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCt                                    <  1:4559088/93‑1 (MQ=255)

                                                     gaGCCAGCTTTCGCACCTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCt                                    <  2:1143519/92‑1 (MQ=255)

                                                       gCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGc                                  >  2:4678526/1‑93 (MQ=255)

                                                       gCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGc                                  <  2:4512196/93‑1 (MQ=255)

                                                        ccAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCg                                 >  2:59974/1‑93 (MQ=255)

                                                         cAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGt                                >  2:2621814/1‑93 (MQ=255)

                                                         cAGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGt                                >  2:3850432/1‑93 (MQ=255)

                                                          aGCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTa                               <  2:1204690/93‑1 (MQ=255)

                                                           gCTTTCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAg                              >  1:4688298/1‑93 (MQ=255)

                                                             tttCGCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCg                            >  2:3125633/1‑93 (MQ=255)

                                                                 gCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGa                        <  1:3958029/93‑1 (MQ=255)

                                                                 gCAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGa                        <  2:1798377/93‑1 (MQ=255)

                                                                  cAACTGCCGCCAGGACTGGATAGCGCCGATTTTGCAGCCATTGTGGGCAATTTACTTGAGAACGCCTTCGAAGCCAGCCTGCGTAGCGATGaa                       >  1:4209307/1‑93 (MQ=255)

                                                                  cAACTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGaa                       >  1:561802/1‑93 (MQ=255)

                                                                     cTGCCGCCAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGa                    >  2:2493678/1‑93 (MQ=255)

                                                                        ccgccAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAAc                 <  1:3328621/93‑1 (MQ=255)

                                                                         cgccAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACa                <  2:1163986/93‑1 (MQ=255)

                                                                          gccAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACaa               <  1:2408222/93‑1 (MQ=255)

                                                                           ccAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAg              >  2:3294294/1‑93 (MQ=255)

                                                                            cAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGa             >  2:3922018/1‑93 (MQ=255)

                                                                            cAGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGa             >  2:1632966/1‑93 (MQ=255)

                                                                             aGGACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGAt            >  2:456905/1‑93 (MQ=255)

                                                                              ggAGTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATc           <  1:1833385/93‑1 (MQ=255)

                                                                              ggACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATc           <  1:2943244/93‑1 (MQ=255)

                                                                              ggACTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATc           >  2:1378174/1‑93 (MQ=255)

                                                                                aCTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGt         >  2:4144218/1‑93 (MQ=255)

                                                                                 cTGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGtt        <  2:4732024/93‑1 (MQ=255)

                                                                                  tGGATAGCGCCGGGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCgcta       >  1:789023/1‑90 (MQ=255)

                                                                                  tGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTg       >  1:1794987/1‑93 (MQ=255)

                                                                                  tGGATAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTg       >  2:784319/1‑93 (MQ=255)

                                                                                     aTAGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCCAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAat    <  1:3442523/93‑1 (MQ=255)

                                                                                       aGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAatta  <  2:1092619/93‑1 (MQ=255)

                                                                                       aGCGCCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAatta  <  2:2066832/93‑1 (MQ=255)

GGTAAAGTGCAGCGCGCCCGGGAACTGGGGCTAAAAATGATCATTGTCCCCGGTAGCCAGCTTTCGCAACTGCCGCCAGGACTGGATAGCACCGAGTTTGCAGCCATTGTGGGCAATTTACTTGATAACGCCTTCGAAGCCAGCCTGCGTAGCGATGAAGGAAACAAGATCGTTGAATTA  >  NC_000913/652658‑652837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`