Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 689,228 T→C S293G (AGC→GGC)  lnt ← apolipoprotein N‑acyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913689,2280TC98.5% 405.7 / ‑2.8 130S293G (AGC→GGC) lntapolipoprotein N‑acyltransferase
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (65/63);  total (66/64)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.35e-01

Only 100 of 131 total aligned reads displayed.

ACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAA  >  NC_000913/689139‑689317
                                                                                         |                                                                                         
  cTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCtt                                                                                      <  2:3147090/93‑1 (MQ=255)
  cTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCtt                                                                                      >  2:2506769/1‑93 (MQ=255)
   tttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCttt                                                                                     >  1:3828969/1‑93 (MQ=255)
    ttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTa                                                                                    <  2:736349/93‑1 (MQ=255)
    ttACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTa                                                                                    <  2:4396121/93‑1 (MQ=255)
      aCCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATc                                                                                  >  2:2570443/1‑93 (MQ=255)
      aCCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATc                                                                                  >  1:2367654/1‑93 (MQ=255)
       cccAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCa                                                                                 <  1:484446/93‑1 (MQ=255)
       cccAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCa                                                                                 >  2:2936457/1‑93 (MQ=255)
       cccAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCa                                                                                 <  1:2547672/93‑1 (MQ=255)
         cAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACg                                                                               >  1:1861595/1‑93 (MQ=255)
           gCGTGATGATGGGGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCa                                                                             >  2:3896128/1‑93 (MQ=255)
            cGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCaa                                                                            <  1:3339581/93‑1 (MQ=255)
             gTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAAc                                                                           <  1:1032023/93‑1 (MQ=255)
              tgatgaTGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACt                                                                          >  1:3635889/1‑93 (MQ=255)
              tgatgaTGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACt                                                                          >  1:2823302/1‑93 (MQ=255)
               gatgatGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTc                                                                         <  2:302122/93‑1 (MQ=255)
               gatgatGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTc                                                                         <  1:723587/93‑1 (MQ=255)
               gatgatGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTc                                                                         <  1:4158859/93‑1 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCa                                                                        >  1:797270/1‑93 (MQ=255)
                atgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCa                                                                        >  2:1496947/1‑93 (MQ=255)
                 tgatgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCAc                                                                       <  1:304445/93‑1 (MQ=255)
                   atgGTGTTGTAGGTCTCGTGGCGGTTCTGCTTATTGAGCCGCGCGTCGACAATCCCGGTTCCCAGCGAGCCACCTTTATCACGCAACTCCCCg                                                                     <  1:660698/93‑1 (MQ=255)
                   atgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCg                                                                     <  1:660700/93‑1 (MQ=255)
                   atgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCg                                                                     <  1:3235927/93‑1 (MQ=255)
                   atgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCg                                                                     <  1:1874192/93‑1 (MQ=255)
                    tgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACATTCCCGGTTACCAGCGAGCCACCTTGATCACGCAACTCACCgc                                                                    >  1:4215926/1‑92 (MQ=255)
                    tgGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGt                                                                    >  2:3432616/1‑93 (MQ=255)
                     ggTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTc                                                                   <  2:2357375/93‑1 (MQ=255)
                        gttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAg                                                                >  2:476147/1‑93 (MQ=255)
                         ttgtAGGTATCGTAGCGGTTCTTCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGt                                                               >  2:1847645/1‑93 (MQ=255)
                         ttgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGt                                                               <  2:972132/93‑1 (MQ=255)
                          tgtAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTg                                                              <  2:737189/93‑1 (MQ=255)
                            tAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCt                                                            <  1:297312/93‑1 (MQ=255)
                               gTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTg                                                         <  2:3583805/93‑1 (MQ=255)
                               gTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTg                                                         >  1:1163487/1‑93 (MQ=255)
                                tATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGa                                                        <  1:3643104/93‑1 (MQ=255)
                                tATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGa                                                        >  1:566341/1‑93 (MQ=255)
                                tATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGa                                                        >  1:3882007/1‑93 (MQ=255)
                                    gTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTACCACGCAACTCACCGTCCAGTGCTTTGAGGaa                                                    <  1:911763/93‑1 (MQ=255)
                                     tAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   >  2:2858914/1‑93 (MQ=255)
                                     tAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   <  1:1175870/93‑1 (MQ=255)
                                     tAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAAc                                                   >  1:3475144/1‑93 (MQ=255)
                                      aGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCGCCGTCCAGTGCTTTGAGGAACg                                                  <  1:748143/93‑1 (MQ=255)
                                      aGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACg                                                  >  2:3453733/1‑93 (MQ=255)
                                      aGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACg                                                  <  2:2768899/93‑1 (MQ=255)
                                       gCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACgg                                                 <  1:529930/93‑1 (MQ=255)
                                       gCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACgg                                                 >  2:2277536/1‑93 (MQ=255)
                                       gCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACgg                                                 >  1:3424643/1‑93 (MQ=255)
                                        gtgTTCTGCTTATTGAGACGCGCGGCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGt                                                <  2:2130959/91‑1 (MQ=255)
                                        cGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGt                                                <  2:2722479/93‑1 (MQ=255)
                                         ggTTCTGCTTATTGAGACGCGGGTCGACAATCCCGGTTACCAGCGTGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGtt                                               >  1:3226110/1‑93 (MQ=255)
                                         ggTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGtt                                               <  1:2789387/93‑1 (MQ=255)
                                          gTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTg                                              >  1:63509/1‑93 (MQ=255)
                                           ttCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGc                                             >  1:3722213/1‑93 (MQ=255)
                                            tCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCt                                            >  1:3831070/1‑93 (MQ=255)
                                            tCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCt                                            >  2:1523785/1‑93 (MQ=255)
                                            tCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCt                                            <  1:141538/93‑1 (MQ=255)
                                               gCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGAt                                         <  2:4332532/93‑1 (MQ=255)
                                                 ttATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTa                                       >  2:3564759/1‑93 (MQ=255)
                                                 ttATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTa                                       >  1:2082601/1‑93 (MQ=255)
                                                 ttATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTa                                       >  1:2082477/1‑93 (MQ=255)
                                                   aTTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAAt                                     <  2:314836/93‑1 (MQ=255)
                                                   aTTGAGACGAGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGCTGCTGATTAAt                                     >  2:2964580/1‑93 (MQ=255)
                                                    ttGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAAtt                                    <  2:3867132/93‑1 (MQ=255)
                                                      gagaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTc                                  <  2:3271246/93‑1 (MQ=255)
                                                       agaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTcc                                 <  1:4375285/93‑1 (MQ=255)
                                                       agaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTcc                                 >  2:3664438/1‑93 (MQ=255)
                                                        gaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                >  1:728211/1‑93 (MQ=255)
                                                        gaCGCGCGTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCa                                >  1:2436788/1‑93 (MQ=255)
                                                           gcgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGAt                             <  1:2792866/93‑1 (MQ=255)
                                                           gcgcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGAt                             <  1:581622/93‑1 (MQ=255)
                                                             gcgTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTGGCTGATTAATTTCCAGATCg                           <  2:4496374/93‑1 (MQ=255)
                                                              cgTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCgg                          >  1:4525177/1‑93 (MQ=255)
                                                               gTCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGt                         <  1:1036303/93‑1 (MQ=255)
                                                                tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        <  1:1589227/93‑1 (MQ=255)
                                                                tCGACAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGtt                        <  1:3107984/93‑1 (MQ=255)
                                                                   aCAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATc                     <  2:3638778/93‑1 (MQ=255)
                                                                    cAATCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCg                    >  2:2889371/1‑93 (MQ=255)
                                                                     aaTCCCGGTTACCAGCGAGGCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGGTATCGc                   >  2:2972887/1‑93 (MQ=255)
                                                                     aaTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGc                   <  1:3549046/93‑1 (MQ=255)
                                                                      aTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGcc                  >  1:3528139/1‑93 (MQ=255)
                                                                      aTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGcc                  >  2:3328453/1‑93 (MQ=255)
                                                                      aTCCCGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGcc                  <  1:3868528/93‑1 (MQ=255)
                                                                         ccGGTTCCCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               <  1:2693673/93‑1 (MQ=255)
                                                                         ccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               >  2:3588196/1‑93 (MQ=255)
                                                                         ccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               <  1:1571831/93‑1 (MQ=255)
                                                                         ccGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGAc               >  1:2079901/1‑93 (MQ=255)
                                                                          cGGTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACt              >  1:4383453/1‑93 (MQ=255)
                                                                            gTTACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTcc            <  2:308705/93‑1 (MQ=255)
                                                                             ttACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCg           <  2:3138971/93‑1 (MQ=255)
                                                                             ttACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCg           >  1:858090/1‑93 (MQ=255)
                                                                              tACCAGCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCgg          >  2:384390/1‑93 (MQ=255)
                                                                              tACCACGGAGCCACCTTTATCGCGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCgg          <  2:1401443/93‑1 (MQ=255)
                                                                                  ggCGAGCCACCTTTATCACGCAACTCACCGTCCCGAGCTTTGAGGGACGGTTGCTGACTAATATCCAGATTGGTTATCGACGACTCCGGCCAg      >  2:2446224/2‑93 (MQ=255)
                                                                                   gCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGa     <  2:2666154/93‑1 (MQ=255)
                                                                                   gCGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCCGCCAGa     >  2:3321814/1‑93 (MQ=255)
                                                                                    cGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGCCTCCGGCCAGAt    >  2:950017/1‑93 (MQ=255)
                                                                                    cGAGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGAt    >  2:950018/1‑93 (MQ=255)
                                                                                      aGCCACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATaa  >  1:1949488/1‑93 (MQ=255)
                                                                                         |                                                                                         
ACCTTTACCCAGCGTGATGATGGTGTTGTAGGTATCGTAGCGGTTCTGCTTATTGAGACGCGCGTCGACAATCCCGGTTACCAGCGAGCTACCTTTATCACGCAACTCACCGTCCAGTGCTTTGAGGAACGGTTGCTGATTAATTTCCAGATCGGTTATCGCCGACTCCGGCCAGATAA  >  NC_000913/689139‑689317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: